14-21502008-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502008
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502008
    reference: chr 14
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10528T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2342A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1469A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2342A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.440T>C
  hgvsp: ENSP00000372410.3:p.Ile147Thr
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1469A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.344A>G
  hgvsp: ENSP00000436033.1:p.Tyr115Cys
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1945A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10528T>C
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr115Cys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

14-21502009-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502009
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502009
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2341T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10529A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.439A>G
  hgvsp: ENSP00000372410.3:p.Ile147Val
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2341T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10529A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1470T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1944T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.345T>C
  hgvsp: ENST00000531638.1:c.345T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1470T>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile147Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/14-21502016-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502016
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502016
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2334A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1937A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2334A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1477A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.432T>G
  hgvsp: ENST00000382951.3:c.432T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1477A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.352A>C
  hgvsp: ENSP00000436033.1:p.Ser118Arg
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10536T>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10536T>G
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44594
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser118Arg
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

14-21502019-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502019
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502019
    reference: chr 14
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1480T>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.429A>T
  hgvsp: ENSP00000372410.3:p.Glu143Asp
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10539A>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2331T>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1934T>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2331T>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1480T>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.355T>A
  hgvsp: ENSP00000436033.1:p.Phe119Ile
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10539A>T
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe119Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

14-21502023-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502023
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502023
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2327T>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.359T>A
  hgvsp: ENSP00000436033.1:p.Ile120Lys
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10543A>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1484T>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.425A>T
  hgvsp: ENSP00000372410.3:p.Tyr142Phe
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1484T>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2327T>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1930T>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10543A>T
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile120Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

14-21502023-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502023
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502023
    reference: chr 14
allele count: 139
allele frequency: 1.144880981797216e-3
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2327T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10543A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2327T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.425A>G
  hgvsp: ENSP00000372410.3:p.Tyr142Cys
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1930T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1484T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10543A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.359T>C
  hgvsp: ENSP00000436033.1:p.Ile120Thr
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1484T>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 9.75e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile120Thr
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/14-21502029-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502029
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502029
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1924C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2321C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1490C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1490C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.419G>T
  hgvsp: ENSP00000372410.3:p.Arg140Leu
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2321C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.365C>A
  hgvsp: ENSP00000436033.1:p.Ala122Glu
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10549G>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10549G>T
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala122Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

14-21502029-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502029
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502029
    reference: chr 14
allele count: 89
allele frequency: 7.330412150364049e-4
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.419G>A
  hgvsp: ENSP00000372410.3:p.Arg140His
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2321C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.365C>T
  hgvsp: ENSP00000436033.1:p.Ala122Val
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1490C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2321C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10549G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10549G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1490C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1924C>T
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala122Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

14-21502030-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502030
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502030
    reference: chr 14
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10550C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.366G>A
  hgvsp: ENST00000531638.1:c.366G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2320G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.418C>T
  hgvsp: ENSP00000372410.3:p.Arg140Cys
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2320G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1491G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10550C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1923G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1491G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg140Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/14-21502033-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502033
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502033
    reference: chr 14
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1920A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.415T>G
  hgvsp: ENSP00000372410.3:p.Ser139Ala
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10553T>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1494A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2317A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1494A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10553T>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2317A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.369A>C
  hgvsp: ENST00000531638.1:c.369A>C(p.%3D)
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser139Ala
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

14-21502039-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502039
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502039
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1500G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10559C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2311G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2311G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1500G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1914G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.409C>T
  hgvsp: ENSP00000372410.3:p.Leu137Phe
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.375G>A
  hgvsp: ENST00000531638.1:c.375G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10559C>T
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44513
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu137Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

14-21502042-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502042
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502042
    reference: chr 14
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10562C>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1503G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2308G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1911G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2308G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.406C>G
  hgvsp: ENSP00000372410.3:p.Leu136Val
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10562C>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.378G>C
  hgvsp: ENSP00000436033.1:p.Ter126TyrextTer?
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1503G>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ter126TyrextTer?
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum

14-21502048-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502048
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502048
    reference: chr 14
allele count: 21
allele frequency: 1.729647810760057e-4
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10568C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1905G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2302G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.400C>T
  hgvsp: ENSP00000372410.3:p.Leu134Phe
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2302G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1509G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.*6G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10568C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1509G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 40658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu134Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

14-21502048-GCTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502048
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502045
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000255472
  ensembl protein: ENSP00000436033
  ensembl transcript: ENST00000531638
  gene symbol: RP11-998D10.1
  hgvsc: ENST00000531638.1:c.*8_*10delTTC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10571_-6-10569delAAG
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.397_399delAAG
  hgvsp: ENSP00000372410.3:p.Lys133del
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2299_564-2297delTCT
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2299_328-2297delTCT
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10571_25-10569delAAG
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1512_*13+1514delTCT
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1512_*13+1514delTCT
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1902_303-1900delTCT
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys133del
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: GCTT
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

14-21502058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502058
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502058
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.390C>T
  hgvsp: ENST00000382951.3:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10578C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2292G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1895G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1519G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2292G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10578C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1519G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr130Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

14-21502068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502068
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502068
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2282C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10588G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.380G>A
  hgvsp: ENSP00000372410.3:p.Ser127Asn
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1885C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10588G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1529C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2282C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1529C>T
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44493
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser127Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

14-21502072-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502072
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502072
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1533T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1533T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2278T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1881T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10592A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.376A>G
  hgvsp: ENSP00000372410.3:p.Asn126Asp
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2278T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10592A>G
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn126Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

14-21502074-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502074
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502074
    reference: chr 14
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10594A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1879T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1535T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10594A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2276T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1535T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.374A>G
  hgvsp: ENSP00000372410.3:p.Tyr125Cys
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2276T>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr125Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

14-21502077-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502077
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502077
    reference: chr 14
allele count: 69
allele frequency: 5.683222139856684e-4
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2273T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1538T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1876T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10597A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.371A>G
  hgvsp: ENSP00000372410.3:p.Tyr124Cys
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10597A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2273T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1538T>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr124Cys
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/14-21502080-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502080
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502080
    reference: chr 14
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2270C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1541C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2270C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1541C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.368G>T
  hgvsp: ENSP00000372410.3:p.Cys123Phe
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10600G>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10600G>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1873C>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys123Phe
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-21502089-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502089
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502089
    reference: chr 14
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1550G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1864G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1550G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.359C>T
  hgvsp: ENSP00000372410.3:p.Pro120Leu
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10609C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2261G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10609C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2261G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro120Leu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

14-21502099-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502099
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502099
    reference: chr 14
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1560G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10619C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1560G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2251G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2251G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10619C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.349C>T
  hgvsp: ENSP00000372410.3:p.Gln117Ter
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1854G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln117Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-21502099-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502099
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502099
    reference: chr 14
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1560G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2251G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2251G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1560G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.349C>G
  hgvsp: ENSP00000372410.3:p.Gln117Glu
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10619C>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10619C>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1854G>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln117Glu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

14-21502107-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502107
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502107
    reference: chr 14
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1846A>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10627T>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.341T>A
  hgvsp: ENSP00000372410.3:p.Leu114Gln
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2243A>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2243A>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1568A>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10627T>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1568A>T
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu114Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

14-21502110-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502110
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502110
    reference: chr 14
allele count: 2198
allele frequency: 1.810603314771492e-2
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10630C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1843G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2240G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.338C>T
  hgvsp: ENSP00000372410.3:p.Ser113Phe
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1571G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2240G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10630C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1571G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 9.75e1
  variant carriers: 1690
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 39188
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4023
  bin: 9.75e1
  variant carriers: 2167
hgvs: p.Ser113Phe
num of homozygotes: 31
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/14-21502113-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502113
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502113
    reference: chr 14
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2237C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10633G>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.335G>T
  hgvsp: ENSP00000372410.3:p.Cys112Phe
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1574C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1840C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10633G>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2237C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1574C>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6337
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys112Phe
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

14-21502118-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502118
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502118
    reference: chr 14
allele count: 33
allele frequency: 2.718689756306537e-4
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2232C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10638G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2232C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.330G>A
  hgvsp: ENST00000382951.3:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1579C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10638G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1579C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1835C>T
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43179
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6326
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr110Thr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

14-21502119-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502119
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502119
    reference: chr 14
allele count: 8
allele frequency: 6.590328692643546e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1580G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1580G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10639C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.329C>T
  hgvsp: ENSP00000372410.3:p.Thr110Met
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2231G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1834G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2231G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10639C>T
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3541
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr110Met
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

14-21502119-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502119
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502119
    reference: chr 14
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10639C>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1834G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2231G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10639C>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.329C>G
  hgvsp: ENSP00000372410.3:p.Thr110Arg
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1580G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2231G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1580G>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3541
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr110Arg
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

14-21502125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502125
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502125
    reference: chr 14
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2225G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10645C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10645C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2225G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1586G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1586G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.323C>T
  hgvsp: ENSP00000372410.3:p.Pro108Leu
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1828G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro108Leu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

14-21502127-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502127
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502127
    reference: chr 14
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10647C>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10647C>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1588G>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2223G>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2223G>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1588G>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.321C>A
  hgvsp: ENST00000382951.3:c.321C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1826G>T
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11431
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu107Leu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

14-21502140-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502140
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502140
    reference: chr 14
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1813G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10660C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10660C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1601G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2210G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.308C>T
  hgvsp: ENSP00000372410.3:p.Thr103Ile
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1601G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2210G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6343
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr103Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

14-21502142-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502142
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502142
    reference: chr 14
allele count: 4
allele frequency: 3.295164346321773e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1811G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2208G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2208G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10662C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.306C>T
  hgvsp: ENST00000382951.3:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10662C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1603G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1603G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu102Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-21502149-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502149
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502149
    reference: chr 14
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10669G>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1610C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.299G>T
  hgvsp: ENSP00000372410.3:p.Cys100Phe
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10669G>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2201C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2201C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1804C>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1610C>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43179
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys100Phe
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

14-21502155-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502155
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502155
    reference: chr 14
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1616T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1798T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10675A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10675A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1616T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.293A>G
  hgvsp: ENSP00000372410.3:p.Glu98Gly
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2195T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2195T>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6364
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu98Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/14-21502169-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502169
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502169
    reference: chr 14
allele count: 15
allele frequency: 1.235503426462836e-4
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10689T>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2181A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1630A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1630A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10689T>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1784A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2181A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.279T>G
  hgvsp: ENSP00000372410.3:p.Cys93Trp
  variant of: http://identifiers.org/hgnc/25285
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3557
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys93Trp
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

14-21502181-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502181
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502181
    reference: chr 14
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2169A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.267T>C
  hgvsp: ENST00000382951.3:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1642A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10701T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2169A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1772A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1642A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10701T>C
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser89Ser
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

14-21502195-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502195
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502195
    reference: chr 14
allele count: 8
allele frequency: 6.589568712727751e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1656A>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10715T>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2155A>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1656A>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1758A>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2155A>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10715T>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.253T>A
  hgvsp: ENSP00000372410.3:p.Phe85Ile
  variant of: http://identifiers.org/hgnc/25285
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe85Ile
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

14-21502196-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502196
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502196
    reference: chr 14
allele count: 4
allele frequency: 3.294784356363876e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10716G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1657C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10716G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1657C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1757C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2154C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2154C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.252G>A
  hgvsp: ENST00000382951.3:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3563
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Lys84Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

14-21502207-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502207
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502207
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10727G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1668C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.241G>A
  hgvsp: ENSP00000372410.3:p.Ala81Thr
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1668C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10727G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2143C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2143C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1746C>T
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala81Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

14-21502217-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502217
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502217
    reference: chr 14
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10737C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2133G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.231C>T
  hgvsp: ENST00000382951.3:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1678G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2133G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1678G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10737C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1736G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala77Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/14-21502220-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502220
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502220
    reference: chr 14
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.228T>G
  hgvsp: ENSP00000372410.3:p.His76Gln
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1681A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2130A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1733A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1681A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2130A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10740T>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10740T>G
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His76Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

14-21502222-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502222
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502222
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10742C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10742C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1683G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2128G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2128G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1731G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.226C>T
  hgvsp: ENSP00000372410.3:p.His76Tyr
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1683G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43196
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His76Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

14-21502232-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502232
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502232
    reference: chr 14
allele count: 5
allele frequency: 4.11834475487612e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1693A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10752T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1721A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10752T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.216T>C
  hgvsp: ENST00000382951.3:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2118A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1693A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2118A>G
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6380
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His72His
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

14-21502237-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502237
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502237
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1698T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.211A>G
  hgvsp: ENSP00000372410.3:p.Ile71Val
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1716T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*13+1698T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10757A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2113T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10757A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2113T>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43191
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile71Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

14-21502249-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502249
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502249
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1710C>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2101C>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1704C>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10769G>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.199G>C
  hgvsp: ENSP00000372410.3:p.Asp67His
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2101C>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10769G>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1704C>G
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp67His
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-21502253-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502253
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502253
    reference: chr 14
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2097A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10773T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1700A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1714A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2097A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.195T>C
  hgvsp: ENST00000382951.3:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1700A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10773T>C
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn65Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

14-21502258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502258
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502258
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2092G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10778C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2092G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.190C>T
  hgvsp: ENSP00000372410.3:p.Gln64Ter
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10778C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1719G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1695G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1695G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln64Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

14-21502270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502270
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502270
    reference: chr 14
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1683G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1683G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.178C>T
  hgvsp: ENSP00000372410.3:p.Arg60Ter
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2080G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1731G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2080G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10790C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10790C>T
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg60Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

14-21502270-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502270
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502270
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1683G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1731G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1683G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10790C>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10790C>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.178C>G
  hgvsp: ENSP00000372410.3:p.Arg60Gly
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2080G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2080G>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg60Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

14-21502282-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502282
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502282
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1671T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.166A>G
  hgvsp: ENSP00000372410.3:p.Met56Val
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2068T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1743T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2068T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10802A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10802A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1671T>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met56Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

14-21502285-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502285
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502285
    reference: chr 14
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10805C>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1668G>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.163C>A
  hgvsp: ENSP00000372410.3:p.Leu55Met
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10805C>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2065G>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1746G>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2065G>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1668G>T
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43173
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu55Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

14-21502292-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502292
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502292
    reference: chr 14
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1661A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2058A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1661A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.156T>C
  hgvsp: ENST00000382951.3:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10812T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10812T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2058A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1753A>G
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys52Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

14-21502294-AATAGCCCCGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502294
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502284
    reference: chr 14
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsp: ENSP00000372410.3:p.Arg49ValfsTer4
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg49ValfsTer4
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: AATAGCCCCGG
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

14-21502296-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502296
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502296
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1757T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1657T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1657T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.152A>G
  hgvsp: ENSP00000372410.3:p.Tyr51Cys
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2054T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10816A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2054T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10816A>G
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43171
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr51Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

14-21502296-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502296
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502296
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2054T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.152A>C
  hgvsp: ENSP00000372410.3:p.Tyr51Ser
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2054T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1657T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1657T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10816A>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1757T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10816A>C
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr51Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

14-21502300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502300
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502300
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10820G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2050C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2050C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1761C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.148G>A
  hgvsp: ENSP00000372410.3:p.Gly50Ser
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10820G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1653C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1653C>T
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly50Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

14-21502302-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502302
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502302
    reference: chr 14
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1651C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1651C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10822G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.146G>A
  hgvsp: ENSP00000372410.3:p.Arg49Gln
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2048C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1763C>T
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10822G>A
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2048C>T
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg49Gln
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

14-21502303-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502303
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502303
    reference: chr 14
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.145C>T
  hgvsp: ENSP00000372410.3:p.Arg49Trp
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2047G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1764G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10823C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10823C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1650G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2047G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1650G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg49Trp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

14-21502305-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502305
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502305
    reference: chr 14
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10825T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10825T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.143T>C
  hgvsp: ENSP00000372410.3:p.Phe48Ser
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2045A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1648A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1766A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2045A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1648A>G
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43168
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Phe48Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/14-21502318-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502318
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502318
    reference: chr 14
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1635A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1635A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.130T>G
  hgvsp: ENSP00000372410.3:p.Tyr44Asp
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2032A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1779A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2032A>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10838T>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10838T>G
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr44Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

14-21502320-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502320
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502320
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10840A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1781T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.128A>G
  hgvsp: ENSP00000372410.3:p.Asn43Ser
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1633T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10840A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1633T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2030T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2030T>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn43Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

14-21502327-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502327
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502327
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2023T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1626T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10847A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1626T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10847A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1788T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2023T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.121A>G
  hgvsp: ENSP00000372410.3:p.Arg41Gly
  variant of: http://identifiers.org/hgnc/25285
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3596
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg41Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-21502327-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502327
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502327
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10847A>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2023T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2023T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1626T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.121A>C
  hgvsp: ENST00000382951.3:c.121A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10847A>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1788T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1626T>G
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg41Arg
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

14-21502330-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502330
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502330
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.118C>T
  hgvsp: ENSP00000372410.3:p.Pro40Ser
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1623G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2020G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1791G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2020G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1623G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10850C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10850C>T
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6370
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro40Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

14-21502332-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502332
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502332
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2018T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1621T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1621T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.116A>C
  hgvsp: ENSP00000372410.3:p.Tyr39Ser
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1793T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10852A>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2018T>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10852A>C
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr39Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

14-21502339-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502339
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502339
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1614T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.109A>G
  hgvsp: ENSP00000372410.3:p.Ile37Val
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1800T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1614T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10859A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2011T>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10859A>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2011T>C
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile37Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

14-21502345-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502345
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502345
    reference: chr 14
allele count: 42842
allele frequency: 3.529692855259689e-1
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1608A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2005A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10865T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2005A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10865T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.103T>C
  hgvsp: ENST00000382951.3:c.103T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1608A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1806A>G
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 780
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 3.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 8.75e1
  variant carriers: 1495
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 8.25e1
  variant carriers: 1367
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 7.25e1
  variant carriers: 987
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 2.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 391
genotype depth: GenotypeDepth
  all individuals: 17194
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 595
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24906
  bin: 9.75e1
  variant carriers: 24681
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 1205
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 9.25e1
  variant carriers: 1676
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 479
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35708
  bin: 9.75e1
  variant carriers: 34491
hgvs: p.Leu35Leu
num of homozygotes: 8290
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

14-21502347-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502347
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502347
    reference: chr 14
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2003G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1606G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.101C>G
  hgvsp: ENSP00000372410.3:p.Thr34Ser
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1808G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10867C>G
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2003G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1606G>C
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10867C>G
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3144
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr34Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

14-21502349-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502349
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502349
    reference: chr 14
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.99T>C
  hgvsp: ENST00000382951.3:c.99T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1810A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10869T>C
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-2001A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1604A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1604A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-2001A>G
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10869T>C
  variant of: http://identifiers.org/hgnc/14460
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr33Tyr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

14-21502352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21502352
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 21502352
    reference: chr 14
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000451899
  ensembl transcript: ENST00000555751
  gene symbol: TPPP2
  hgvsc: ENST00000555751.1:c.*14-1601G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl transcript: ENST00000529496
  gene symbol: TPPP2
  hgvsc: ENST00000529496.1:n.564-1998G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000423171
  ensembl transcript: ENST00000472458
  gene symbol: TPPP2
  hgvsc: ENST00000472458.1:c.328-1998G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206150
  ensembl protein: ENSP00000372410
  ensembl transcript: ENST00000382951
  gene symbol: RNASE13
  hgvsc: ENST00000382951.3:c.96C>T
  hgvsp: ENST00000382951.3:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25285
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000385889
  ensembl transcript: ENST00000403829
  gene symbol: NDRG2
  hgvsc: ENST00000403829.3:c.25-10872C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000421438
  ensembl transcript: ENST00000481535
  gene symbol: TPPP2
  hgvsc: ENST00000481535.1:c.*13+1813G>A
  variant of: http://identifiers.org/hgnc/19293
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165795
  ensembl protein: ENSP00000451274
  ensembl transcript: ENST00000555026
  gene symbol: NDRG2
  hgvsc: ENST00000555026.1:c.-6-10872C>T
  variant of: http://identifiers.org/hgnc/14460
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179636
  ensembl protein: ENSP00000436874
  ensembl transcript: ENST00000495665
  gene symbol: TPPP2
  hgvsc: ENST00000495665.2:c.303-1601G>A
  variant of: http://identifiers.org/hgnc/19293
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe32Phe
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 723
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1809
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1667
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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Latino
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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South Asian
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BaseQRankSum
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DP
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FS
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MQRankSum
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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African
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East Asian
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VQSLOD
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DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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MQ
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Other
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East Asian
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African
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ClippingRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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MQ
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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African
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East Asian
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Other
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European (Finnish)
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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Other
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African
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European (Finnish)
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ClippingRankSum
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

VQSLOD
type: SiteQuality
SIO_000300: 3.54e0

QD
type: SiteQuality
SIO_000300: 1.306e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
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allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

FS
type: SiteQuality
SIO_000300: 1.135e0

VQSLOD
type: SiteQuality
SIO_000300: 3.05e0

QD
type: SiteQuality
SIO_000300: 1.264e1

DP
type: SiteQuality
SIO_000300: 1.545776e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.597e0

MQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.54532e6

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.307e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.484e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.291e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.93e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.324e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.545803e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 1.112e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 20
allele frequency: 2.996703626011388e-4
allele num: 66740
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 1.547923e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.637e0

FS
type: SiteQuality
SIO_000300: 5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.45e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.45e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
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DP
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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num of homozygotes: 0

Other
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European (Non-Finnish)
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allele count: 0
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Latino
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South Asian
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East Asian
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African
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VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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BaseQRankSum
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DP
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e0

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-1

FS
type: SiteQuality
SIO_000300: 3.215e0

MQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

QD
type: SiteQuality
SIO_000300: 1.607e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.89e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.546491e6

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6566
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44440
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 9.75e1
variant carriers: 69

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 66
allele frequency: 9.889418322395038e-4
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.434e1

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

DP
type: SiteQuality
SIO_000300: 1.55814e6

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44438
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 8.75e1
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GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422774076317383e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.059e0

DP
type: SiteQuality
SIO_000300: 1.550377e6

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.56e-1

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6555
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2467
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44400
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

FS
type: SiteQuality
SIO_000300: 3.419e0

DP
type: SiteQuality
SIO_000300: 1.550195e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.407e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.031e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.404e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.601e0

DP
type: SiteQuality
SIO_000300: 1.551066e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 1.848e0

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.601e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

FS
type: SiteQuality
SIO_000300: 1.848e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.551066e6

QD
type: SiteQuality
SIO_000300: 1.404e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

GenotypeQuality
all individuals: 6565
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 724
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2469
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 1.551291e6

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6270
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 2344
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 43044
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 128
allele frequency: 1.105544999136293e-2
allele num: 11578
num of homozygotes: 1

African
type: Population
allele count: 240
allele frequency: 2.306361714395541e-2
allele num: 10406
num of homozygotes: 3

South Asian
type: Population
allele count: 486
allele frequency: 2.944740668928745e-2
allele num: 16504
num of homozygotes: 9

Other
type: Population
allele count: 20
allele frequency: 2.202643171806168e-2
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1234
allele frequency: 1.849187795959959e-2
allele num: 66732
num of homozygotes: 17

European (Finnish)
type: Population
allele count: 90
allele frequency: 1.360749924402782e-2
allele num: 6614
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.275e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

DP
type: SiteQuality
SIO_000300: 1.793182e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

QD
type: SiteQuality
SIO_000300: 1.402e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.61e0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
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GenotypeQuality
all individuals: 712
bin: 8.75e1
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GenotypeQuality
all individuals: 22
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2386
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 7.25e1
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GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.286e0

QD
type: SiteQuality
SIO_000300: 1.003e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

DP
type: SiteQuality
SIO_000300: 1.629518e6

VQSLOD
type: SiteQuality
SIO_000300: 1.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.899e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 715
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 29
allele frequency: 2.505183137525916e-3
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

QD
type: SiteQuality
SIO_000300: 1.281e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.862e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
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SIO_000300: 3.39e0

DP
type: SiteQuality
SIO_000300: 1.633011e6

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6334
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.424242424242424e-4
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.166e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

QD
type: SiteQuality
SIO_000300: 1.358e1

DP
type: SiteQuality
SIO_000300: 1.631055e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.841e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

QD
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SIO_000300: 1.358e1

ClippingRankSum
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SIO_000300: -9.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

FS
type: SiteQuality
SIO_000300: 1.166e0

VQSLOD
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SIO_000300: 3.79e0

DP
type: SiteQuality
SIO_000300: 1.631055e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.135e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.630767e6

MQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 2.548e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

DP
type: SiteQuality
SIO_000300: 1.630635e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.908e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e-1

InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.465e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.622140050843541e-4
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Other
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allele num: 908
num of homozygotes: 0

South Asian
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MQ
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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Other
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allele num: 908
num of homozygotes: 0

South Asian
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
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MQ
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MQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
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allele num: 11572
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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European (Finnish)
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allele num: 6614
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European (Non-Finnish)
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East Asian
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allele num: 8654
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Other
type: Population
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VQSLOD
type: SiteQuality
SIO_000300: 1.21e-1

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 5.873e0

MQ
type: SiteQuality
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
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allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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African
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allele frequency: 1.249279261964251e-3
allele num: 10406
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East Asian
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Latino
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allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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DP
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.117e0

QD
type: SiteQuality
SIO_000300: 1.713e1

FS
type: SiteQuality
SIO_000300: 2.186e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: -8.169e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.632314e6

GenotypeQuality
all individuals: 716
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.844961240310077e-4
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.787e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.632864e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 1.306e1

FS
type: SiteQuality
SIO_000300: 3.003e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.316e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

DP
type: SiteQuality
SIO_000300: 1.632663e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.68e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.394e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: -9.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 6.3e0

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.632527e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.906e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0175e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.635e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

DP
type: SiteQuality
SIO_000300: 1.632606e6

VQSLOD
type: SiteQuality
SIO_000300: -1.309e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.632703e6

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

DP
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

FS
type: SiteQuality
SIO_000300: 2.046e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

FS
type: SiteQuality
SIO_000300: 1.144e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.57e1

DP
type: SiteQuality
SIO_000300: 1.633028e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10406
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.35e0

MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
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SIO_000300: -9.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

ClippingRankSum
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SIO_000300: -3.67e-1

DP
type: SiteQuality
SIO_000300: 1.632772e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.403e0

DP
type: SiteQuality
SIO_000300: 1.632768e6

InbreedingCoeff
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SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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VQSLOD
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SIO_000300: 9.67e-1

QD
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BaseQRankSum
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SIO_000300: -6.64e-1

ClippingRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
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SIO_000300: 1.633151e6

FS
type: SiteQuality
SIO_000300: 3.214e0

MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.983e1

QD
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SIO_000300: 1.439e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8654
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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FS
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SIO_000300: 6.830000000000001e-1

MQ
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SIO_000300: 5.838e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.411e0

BaseQRankSum
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SIO_000300: -8.525e0

QD
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SIO_000300: 1.048e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 2.49e0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.59e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.175e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.59e-1

MQRankSum
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BaseQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
SIO_000300: 1.175e1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
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SIO_000300: 1.65e0

InbreedingCoeff
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MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQRankSum
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SIO_000300: -1.64e0

QD
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele num: 908
num of homozygotes: 0

QD
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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East Asian
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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ReadPosRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: 5.52e0

VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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FS
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QD
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MQ
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DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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MQ
type: SiteQuality
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DP
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MQRankSum
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SIO_000300: -8.85e-1

QD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
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allele num: 8654
num of homozygotes: 0

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 5.33e-1

DP
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ReadPosRankSum
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QD
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MQRankSum
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

ReadPosRankSum
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QD
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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DP
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BaseQRankSum
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SIO_000300: 3.39e0

FS
type: SiteQuality
SIO_000300: 1.863e0

InbreedingCoeff
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SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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African
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ReadPosRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQ
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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South Asian
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Latino
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East Asian
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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MQ
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QD
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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South Asian
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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QD
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.351000000000001e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.634846e6

QD
type: SiteQuality
SIO_000300: 1.243e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.89e-1

DP
type: SiteQuality
SIO_000300: 1.634975e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.19e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.635117e6

MQ
type: SiteQuality
SIO_000300: 5.935e1

VQSLOD
type: SiteQuality
SIO_000300: -2.256e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.242e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.2753e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: -1.149e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

QD
type: SiteQuality
SIO_000300: 1.028e1

GenotypeQuality
all individuals: 460
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 8
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2110
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variant carriers: 6

GenotypeQuality
all individuals: 231
bin: 8.25e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 24794
allele frequency: 3.715570208302113e-1
allele num: 66730
num of homozygotes: 4547

African
type: Population
allele count: 6347
allele frequency: 6.100538254517494e-1
allele num: 10404
num of homozygotes: 1973

European (Finnish)
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allele count: 2917
allele frequency: 4.413010590015128e-1
allele num: 6610
num of homozygotes: 644

South Asian
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allele count: 4326
allele frequency: 2.619912790697674e-1
allele num: 16512
num of homozygotes: 585

Latino
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allele count: 2237
allele frequency: 1.933448573898012e-1
allele num: 11570
num of homozygotes: 249

East Asian
type: Population
allele count: 1896
allele frequency: 2.193936588752604e-1
allele num: 8642
num of homozygotes: 224

Other
type: Population
allele count: 325
allele frequency: 3.579295154185022e-1
allele num: 908
num of homozygotes: 68

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

DP
type: SiteQuality
SIO_000300: 4.809156e6

VQSLOD
type: SiteQuality
SIO_000300: 5.85e0

QD
type: SiteQuality
SIO_000300: 1.902e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1105
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GenotypeQuality
all individuals: 530
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.19e-1

DP
type: SiteQuality
SIO_000300: 1.737571e6

VQSLOD
type: SiteQuality
SIO_000300: -8.29e-1

FS
type: SiteQuality
SIO_000300: 4.483e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

MQRankSum
type: SiteQuality
SIO_000300: -5.95e-1

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.74e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495729057395475e-5
allele num: 66730
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

QD
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BaseQRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.982e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1