11-1904823-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1904823
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1904823
    reference: chr 11
allele count: 5
allele frequency: 9.415132000150643e-5
allele num: 53106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.312+33C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.368+33C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.312+33C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.312+33C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.447+33C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.312+33C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.994+33C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.498+33C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.882+33C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.471+33C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.312+33C>G
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16753
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20937
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-1904824-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1904824
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1904824
    reference: chr 11
allele count: 1
allele frequency: 1.915488641152358e-5
allele num: 52206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.312+34C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.312+34C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.882+34C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.994+34C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.471+34C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.368+34C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.447+34C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.312+34C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.312+34C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.312+34C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.498+34C>G
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16466
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

11-1904840-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1904840
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1904840
    reference: chr 11
allele count: 1
allele frequency: 2.423772359300015e-5
allele num: 41258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.498+50A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.312+50A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.471+50A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.368+50A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.447+50A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.312+50A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.882+50A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.312+50A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.312+50A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.994+50A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.312+50A>G
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

11-1905121-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905121
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905121
    reference: chr 11
allele count: 1
allele frequency: 8.749518776467294e-6
allele num: 114292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-41A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-41A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-41A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-41A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-41A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-41A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-41A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-41A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-41A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-41A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-41A>G
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

11-1905129-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905129
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905129
    reference: chr 11
allele count: 1
allele frequency: 8.726155779332973e-6
allele num: 114598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-33G>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-33G>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-33G>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-33G>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-33G>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-33G>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-33G>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-33G>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-33G>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-33G>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-33G>T
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-1905130-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905130
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905130
    reference: chr 11
allele count: 1
allele frequency: 8.720068365335985e-6
allele num: 114678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-32G>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-32G>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-32G>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-32G>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-32G>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-32G>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-32G>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-32G>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-32G>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-32G>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-32G>C
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42227
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

11-1905131-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905131
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905131
    reference: chr 11
allele count: 1
allele frequency: 8.729812309035356e-6
allele num: 114550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-31T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-31T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-31T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-31T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-31T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-31T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-31T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-31T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-31T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-31T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-31T>C
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

11-1905134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905134
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905134
    reference: chr 11
allele count: 26
allele frequency: 2.267455043343275e-4
allele num: 114666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-28C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-28C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-28C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-28C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-28C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-28C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-28C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-28C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-28C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-28C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-28C>T
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42230
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS

11-1905143-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905143
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905143
    reference: chr 11
allele count: 1
allele frequency: 8.689456213830139e-6
allele num: 115082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-19T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-19T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-19T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-19T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-19T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-19T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-19T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-19T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-19T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-19T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-19T>G
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42280
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

11-1905145-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905145
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905146
    reference: chr 11
allele count: 1
allele frequency: 8.700645587902622e-6
allele num: 114934
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-16dupG
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-16dupG
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-16dupG
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-16dupG
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-16dupG
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-16dupG
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-16dupG
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-16dupG
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-16dupG
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-16dupG
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-16dupG
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42334
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

11-1905146-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905146
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905145
    reference: chr 11
allele count: 15851
allele frequency: 1.990231530309879e-1
allele num: 79644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-5delT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-5delT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-5delT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-5delT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-5delT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-5delT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-5delT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-5delT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-5delT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-5delT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-5delT
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.5e0
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.75e1
  variant carriers: 805
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 2.25e1
  variant carriers: 860
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.75e1
  variant carriers: 673
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 495
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 47612
  bin: 9.75e1
  variant carriers: 11290
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 388
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 147
num of homozygotes: 1051
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: GT
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

11-1905146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905146
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905146
    reference: chr 11
allele count: 1
allele frequency: 1.255587363768771e-5
allele num: 79644
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-16G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-16G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-16G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-16G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-16G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-16G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-16G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-16G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-16G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-16G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-16G>A
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22065
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

11-1905146-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905146
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905147
    reference: chr 11
allele count: 10368
allele frequency: 1.301792978755462e-1
allele num: 79644
alternate allele: GT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-5dupT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-5dupT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-5dupT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-5dupT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-5dupT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-5dupT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-5dupT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-5dupT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-5dupT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-5dupT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-5dupT
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.75e1
  variant carriers: 386
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 2.25e1
  variant carriers: 541
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.75e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 47612
  bin: 9.75e1
  variant carriers: 9627
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 2.75e1
  variant carriers: 409
num of homozygotes: 41
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

11-1905146-G-GTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905146
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905148
    reference: chr 11
allele count: 132
allele frequency: 1.657375320174778e-3
allele num: 79644
alternate allele: GTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-6_472-5dupTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-6_313-5dupTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-6_448-5dupTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-6_313-5dupTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-6_995-5dupTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-6_369-5dupTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-6_313-5dupTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-6_883-5dupTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-6_313-5dupTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-6_313-5dupTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-6_499-5dupTT
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47612
  bin: 9.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 9.25e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

11-1905146-GTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905146
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905144
    reference: chr 11
allele count: 11
allele frequency: 1.381146100145648e-4
allele num: 79644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-6_995-5delTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-6_883-5delTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-6_369-5delTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-6_313-5delTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-6_313-5delTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-6_499-5delTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-6_313-5delTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-6_472-5delTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-6_313-5delTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-6_448-5delTT
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-6_313-5delTT
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47612
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: GTT
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

11-1905147-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905147
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905147
    reference: chr 11
allele count: 2
allele frequency: 3.2123353678124e-4
allele num: 6226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-15T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-15T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-15T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-15T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-15T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-15T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-15T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-15T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-15T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-15T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-15T>G
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12719
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16087
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

11-1905148-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905148
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905148
    reference: chr 11
allele count: 1
allele frequency: 1.291922898041445e-5
allele num: 77404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-14T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-14T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-14T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-14T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-14T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-14T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-14T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-14T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-14T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-14T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-14T>C
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff

11-1905152-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905152
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905152
    reference: chr 11
allele count: 12
allele frequency: 1.005631536604988e-4
allele num: 119328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-10T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-10T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-10T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-10T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-10T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-10T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-10T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-10T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-10T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-10T>C
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-10T>C
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5798
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

11-1905158-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905158
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905158
    reference: chr 11
allele count: 5
allele frequency: 4.207054388799138e-5
allele num: 118848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.313-4C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.448-4C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.313-4C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.499-4C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.313-4C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.472-4C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.313-4C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.369-4C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.995-4C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.883-4C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.313-4C>T
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.883-4C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-1905173-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905173
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905173
    reference: chr 11
allele count: 26
allele frequency: 2.172532504428624e-4
allele num: 119676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.324T>G
  hgvsp: ENSP00000412405.1:p.Cys108Trp
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.324T>G
  hgvsp: ENSP00000416363.1:p.Cys108Trp
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.483T>G
  hgvsp: ENSP00000400346.1:p.Cys161Trp
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.894T>G
  hgvsp: ENSP00000371194.1:p.Cys298Trp
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.510T>G
  hgvsp: ENSP00000308383.3:p.Cys170Trp
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.324T>G
  hgvsp: ENSP00000383932.2:p.Cys108Trp
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.324T>G
  hgvsp: ENSP00000384022.2:p.Cys108Trp
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.459T>G
  hgvsp: ENSP00000400999.1:p.Cys153Trp
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.324T>G
  hgvsp: ENSP00000402543.1:p.Cys108Trp
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1006T>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.380T>G
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys298Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

11-1905175-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905175
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905175
    reference: chr 11
allele count: 9
allele frequency: 7.516913054372337e-5
allele num: 119730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.461A>G
  hgvsp: ENSP00000400999.1:p.Gln154Arg
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.382A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.326A>G
  hgvsp: ENSP00000402543.1:p.Gln109Arg
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.326A>G
  hgvsp: ENSP00000416363.1:p.Gln109Arg
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.326A>G
  hgvsp: ENSP00000384022.2:p.Gln109Arg
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1008A>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.326A>G
  hgvsp: ENSP00000383932.2:p.Gln109Arg
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.512A>G
  hgvsp: ENSP00000308383.3:p.Gln171Arg
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.896A>G
  hgvsp: ENSP00000371194.1:p.Gln299Arg
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.485A>G
  hgvsp: ENSP00000400346.1:p.Gln162Arg
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.326A>G
  hgvsp: ENSP00000412405.1:p.Gln109Arg
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Gln299Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-1905185-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905185
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905185
    reference: chr 11
allele count: 4
allele frequency: 3.33739382915881e-5
allele num: 119854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.336G>A
  hgvsp: ENST00000417766.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.336G>A
  hgvsp: ENST00000446808.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.471G>A
  hgvsp: ENST00000429923.1:c.471G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.522G>A
  hgvsp: ENST00000311604.3:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.336G>A
  hgvsp: ENST00000432093.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.392G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.336G>A
  hgvsp: ENST00000406638.2:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.336G>A
  hgvsp: ENST00000405957.2:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.495G>A
  hgvsp: ENST00000457279.1:c.495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1018G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.906G>A
  hgvsp: ENST00000381775.1:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg302Arg
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

11-1905193-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905193
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905193
    reference: chr 11
allele count: 1
allele frequency: 8.334861391255063e-6
allele num: 119978
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.914G>A
  hgvsp: ENSP00000371194.1:p.Ser305Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1026G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.344G>A
  hgvsp: ENSP00000416363.1:p.Ser115Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.503G>A
  hgvsp: ENSP00000400346.1:p.Ser168Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.530G>A
  hgvsp: ENSP00000308383.3:p.Ser177Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.344G>A
  hgvsp: ENSP00000412405.1:p.Ser115Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.344G>A
  hgvsp: ENSP00000384022.2:p.Ser115Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.344G>A
  hgvsp: ENSP00000402543.1:p.Ser115Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.479G>A
  hgvsp: ENSP00000400999.1:p.Ser160Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.400G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.344G>A
  hgvsp: ENSP00000383932.2:p.Ser115Asn
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser305Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

11-1905194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905194
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905194
    reference: chr 11
allele count: 12
allele frequency: 1.000050002500125e-4
allele num: 119994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1027C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.345C>T
  hgvsp: ENST00000406638.2:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.345C>T
  hgvsp: ENST00000417766.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.345C>T
  hgvsp: ENST00000405957.2:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.345C>T
  hgvsp: ENST00000446808.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.915C>T
  hgvsp: ENST00000381775.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.480C>T
  hgvsp: ENST00000429923.1:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.345C>T
  hgvsp: ENST00000432093.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.504C>T
  hgvsp: ENST00000457279.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.531C>T
  hgvsp: ENST00000311604.3:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.401C>T
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser305Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

11-1905196-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905196
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905196
    reference: chr 11
allele count: 1
allele frequency: 8.330834083108401e-6
allele num: 120036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.347C>T
  hgvsp: ENSP00000384022.2:p.Pro116Leu
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.347C>T
  hgvsp: ENSP00000383932.2:p.Pro116Leu
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.403C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.482C>T
  hgvsp: ENSP00000400999.1:p.Pro161Leu
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.347C>T
  hgvsp: ENSP00000402543.1:p.Pro116Leu
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.917C>T
  hgvsp: ENSP00000371194.1:p.Pro306Leu
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.506C>T
  hgvsp: ENSP00000400346.1:p.Pro169Leu
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.347C>T
  hgvsp: ENSP00000412405.1:p.Pro116Leu
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.533C>T
  hgvsp: ENSP00000308383.3:p.Pro178Leu
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.347C>T
  hgvsp: ENSP00000416363.1:p.Pro116Leu
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1029C>T
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro306Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

11-1905218-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905218
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905218
    reference: chr 11
allele count: 2
allele frequency: 1.663976571209877e-5
allele num: 120194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.425C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.504C>G
  hgvsp: ENSP00000400999.1:p.Ile168Met
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.528C>G
  hgvsp: ENSP00000400346.1:p.Ile176Met
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.369C>G
  hgvsp: ENSP00000412405.1:p.Ile123Met
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.369C>G
  hgvsp: ENSP00000384022.2:p.Ile123Met
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.369C>G
  hgvsp: ENSP00000416363.1:p.Ile123Met
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1051C>G
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.369C>G
  hgvsp: ENSP00000402543.1:p.Ile123Met
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.939C>G
  hgvsp: ENSP00000371194.1:p.Ile313Met
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.555C>G
  hgvsp: ENSP00000308383.3:p.Ile185Met
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.369C>G
  hgvsp: ENSP00000383932.2:p.Ile123Met
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ile313Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ

11-1905218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905218
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905218
    reference: chr 11
allele count: 3
allele frequency: 2.495964856814816e-5
allele num: 120194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.528C>T
  hgvsp: ENST00000457279.1:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1051C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.939C>T
  hgvsp: ENST00000381775.1:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.504C>T
  hgvsp: ENST00000429923.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.555C>T
  hgvsp: ENST00000311604.3:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.369C>T
  hgvsp: ENST00000405957.2:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.369C>T
  hgvsp: ENST00000417766.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.369C>T
  hgvsp: ENST00000432093.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.369C>T
  hgvsp: ENST00000446808.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.369C>T
  hgvsp: ENST00000406638.2:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.425C>T
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile313Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

11-1905219-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905219
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905219
    reference: chr 11
allele count: 2
allele frequency: 1.664004259850905e-5
allele num: 120192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.370G>A
  hgvsp: ENSP00000384022.2:p.Glu124Lys
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.370G>A
  hgvsp: ENSP00000383932.2:p.Glu124Lys
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.370G>A
  hgvsp: ENSP00000402543.1:p.Glu124Lys
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.505G>A
  hgvsp: ENSP00000400999.1:p.Glu169Lys
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.940G>A
  hgvsp: ENSP00000371194.1:p.Glu314Lys
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.370G>A
  hgvsp: ENSP00000416363.1:p.Glu124Lys
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.529G>A
  hgvsp: ENSP00000400346.1:p.Glu177Lys
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1052G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.426G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.370G>A
  hgvsp: ENSP00000412405.1:p.Glu124Lys
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.556G>A
  hgvsp: ENSP00000308383.3:p.Glu186Lys
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu314Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

11-1905224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905224
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905224
    reference: chr 11
allele count: 1
allele frequency: 8.319467554076538e-6
allele num: 120200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1057G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.510G>A
  hgvsp: ENST00000429923.1:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.375G>A
  hgvsp: ENST00000446808.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.375G>A
  hgvsp: ENST00000405957.2:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.375G>A
  hgvsp: ENST00000417766.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.375G>A
  hgvsp: ENST00000432093.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.945G>A
  hgvsp: ENST00000381775.1:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.561G>A
  hgvsp: ENST00000311604.3:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.534G>A
  hgvsp: ENST00000457279.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.375G>A
  hgvsp: ENST00000406638.2:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.431G>A
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln315Gln
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-1905226-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905226
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905226
    reference: chr 11
allele count: 3
allele frequency: 2.495425054067543e-5
allele num: 120220
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.947G>A
  hgvsp: ENSP00000371194.1:p.Ser316Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.377G>A
  hgvsp: ENSP00000383932.2:p.Ser126Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.512G>A
  hgvsp: ENSP00000400999.1:p.Ser171Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.536G>A
  hgvsp: ENSP00000400346.1:p.Ser179Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.563G>A
  hgvsp: ENSP00000308383.3:p.Ser188Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.377G>A
  hgvsp: ENSP00000412405.1:p.Ser126Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.377G>A
  hgvsp: ENSP00000416363.1:p.Ser126Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000402543
  ensembl transcript: ENST00000446808
  gene symbol: LSP1
  hgvsc: ENST00000446808.1:c.377G>A
  hgvsp: ENSP00000402543.1:p.Ser126Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1059G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.377G>A
  hgvsp: ENSP00000384022.2:p.Ser126Asn
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.433G>A
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser316Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-1905230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905230
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905230
    reference: chr 11
allele count: 7
allele frequency: 5.824305659561014e-5
allele num: 120186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.516G>A
  hgvsp: ENST00000429923.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.437G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.567G>A
  hgvsp: ENST00000311604.3:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.540G>A
  hgvsp: ENST00000457279.1:c.540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.381G>A
  hgvsp: ENST00000417766.1:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.381G>A
  hgvsp: ENST00000405957.2:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.381G>A
  hgvsp: ENST00000432093.1:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1063G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.951G>A
  hgvsp: ENST00000381775.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.381G>A
  hgvsp: ENST00000406638.2:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser317Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

11-1905238-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905238
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905239
    reference: chr 11
allele count: 1
allele frequency: 8.323483877411729e-6
allele num: 120142
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.389_390insA
  hgvsp: ENSP00000416363.1:p.Ser131GlufsTer21
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.524_525insA
  hgvsp: ENSP00000400999.1:p.Leu176LeufsTer?
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.389_390insA
  hgvsp: ENSP00000383932.2:p.Ser131GlufsTer21
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.548_549insA
  hgvsp: ENSP00000400346.1:p.Ser184GlufsTer21
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1071_1072insA
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.959_960insA
  hgvsp: ENSP00000371194.1:p.Ser321GlufsTer21
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.389_390insA
  hgvsp: ENSP00000412405.1:p.Ser131GlufsTer21
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.389_390insA
  hgvsp: ENSP00000384022.2:p.Ser131GlufsTer21
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.575_576insA
  hgvsp: ENSP00000308383.3:p.Ser193GlufsTer21
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.445_446insA
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser321GlufsTer21
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

11-1905239-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905239
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905239
    reference: chr 11
allele count: 1
allele frequency: 8.323622440486099e-6
allele num: 120140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.576G>A
  hgvsp: ENST00000311604.3:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.390G>A
  hgvsp: ENST00000432093.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.549G>A
  hgvsp: ENST00000457279.1:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.390G>A
  hgvsp: ENST00000417766.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.390G>A
  hgvsp: ENST00000405957.2:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400999
  ensembl transcript: ENST00000429923
  gene symbol: LSP1
  hgvsc: ENST00000429923.1:c.525G>A
  hgvsp: ENST00000429923.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.390G>A
  hgvsp: ENST00000406638.2:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.960G>A
  hgvsp: ENST00000381775.1:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.446G>A
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1072G>A
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu320Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

11-1905248-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1905248
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1905248
    reference: chr 11
allele count: 1
allele frequency: 8.332916687498959e-6
allele num: 120006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000416363
  ensembl transcript: ENST00000417766
  gene symbol: LSP1
  hgvsc: ENST00000417766.1:c.399C>T
  hgvsp: ENST00000417766.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000371194
  ensembl transcript: ENST00000381775
  gene symbol: LSP1
  hgvsc: ENST00000381775.1:c.969C>T
  hgvsp: ENST00000381775.1:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000400346
  ensembl transcript: ENST00000457279
  gene symbol: LSP1
  hgvsc: ENST00000457279.1:c.558C>T
  hgvsp: ENST00000457279.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000384022
  ensembl transcript: ENST00000406638
  gene symbol: LSP1
  hgvsc: ENST00000406638.2:c.399C>T
  hgvsp: ENST00000406638.2:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000412405
  ensembl transcript: ENST00000432093
  gene symbol: LSP1
  hgvsc: ENST00000432093.1:c.399C>T
  hgvsp: ENST00000432093.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000383932
  ensembl transcript: ENST00000405957
  gene symbol: LSP1
  hgvsc: ENST00000405957.2:c.399C>T
  hgvsp: ENST00000405957.2:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000485341
  gene symbol: LSP1
  hgvsc: ENST00000485341.1:n.1081C>T
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130592
  ensembl protein: ENSP00000308383
  ensembl transcript: ENST00000311604
  gene symbol: LSP1
  hgvsc: ENST00000311604.3:c.585C>T
  hgvsp: ENST00000311604.3:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6707
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130592
  ensembl transcript: ENST00000472974
  gene symbol: LSP1
  hgvsc: ENST00000472974.1:n.455C>T
  variant of: http://identifiers.org/hgnc/6707
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr323Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

11-95826086-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826086
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826086
    reference: chr 11
allele count: 35
allele frequency: 3.189066059225513e-4
allele num: 109750
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1109C>T
  hgvsp: ENSP00000434552.1:p.Pro370Leu
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21800
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10320
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10901
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3051
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 26073
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3911
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9049
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3621
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro370Leu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 32
  allele frequency: 5.157630068983302e-4
  allele num: 62044
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6352
  num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

11-95826096-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826096
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826096
    reference: chr 11
allele count: 4
allele frequency: 3.577881536342332e-5
allele num: 111798
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1099G>A
  hgvsp: ENSP00000434552.1:p.Glu367Lys
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26086
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30343
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4524
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu367Lys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9198
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10798
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

11-95826101-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826101
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826101
    reference: chr 11
allele count: 1
allele frequency: 8.861006255870417e-6
allele num: 112854
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1094A>G
  hgvsp: ENSP00000434552.1:p.Lys365Arg
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4834
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6238
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys365Arg
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 828
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9270
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

11-95826114-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826114
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826114
    reference: chr 11
allele count: 1
allele frequency: 8.651117724409994e-6
allele num: 115592
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1081A>G
  hgvsp: ENSP00000434552.1:p.Lys361Glu
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15090
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5514
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys361Glu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 858
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11188
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-95826118-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826118
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826118
    reference: chr 11
allele count: 1
allele frequency: 8.581628449814637e-6
allele num: 116528
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1077G>T
  hgvsp: ENSP00000434552.1:p.Met359Ile
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met359Ile
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 862
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11250
  num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

11-95826133-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826133
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826133
    reference: chr 11
allele count: 12
allele frequency: 1.008691558932804e-4
allele num: 118966
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1062G>A
  hgvsp: ENST00000524717.1:c.1062G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17091
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg354Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6606
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 12
  allele frequency: 1.816970504512143e-4
  allele num: 66044
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-95826136-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826136
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826136
    reference: chr 11
allele count: 1
allele frequency: 8.371703641691085e-6
allele num: 119450
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1059T>C
  hgvsp: ENST00000524717.1:c.1059T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro353Pro
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15928
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11472
  num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-95826137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826137
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826137
    reference: chr 11
allele count: 1
allele frequency: 8.367780697203488e-6
allele num: 119506
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1058C>T
  hgvsp: ENSP00000434552.1:p.Pro353Leu
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro353Leu
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6610
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9752
  num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ

11-95826137-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826137
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826137
    reference: chr 11
allele count: 1
allele frequency: 8.367780697203488e-6
allele num: 119506
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1058C>G
  hgvsp: ENSP00000434552.1:p.Pro353Arg
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17269
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro353Arg
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11474
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15960
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

11-95826152-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826152
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826152
    reference: chr 11
allele count: 1
allele frequency: 8.311722853913159e-6
allele num: 120312
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1043G>C
  hgvsp: ENSP00000434552.1:p.Ser348Thr
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser348Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.502900598154438e-5
  allele num: 66538
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11520
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

11-95826152-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826152
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826152
    reference: chr 11
allele count: 22
allele frequency: 1.828579027860895e-4
allele num: 120312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1043G>A
  hgvsp: ENSP00000434552.1:p.Ser348Asn
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17837
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34784
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser348Asn
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.023888720895071e-4
  allele num: 6614
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8606
  num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

11-95826161-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826161
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826161
    reference: chr 11
allele count: 1
allele frequency: 8.296276631047985e-6
allele num: 120536
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1034G>A
  hgvsp: ENSP00000434552.1:p.Gly345Asp
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46955
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6433
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly345Asp
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9794
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 8.667013347200555e-5
  allele num: 11538
  num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

11-95826162-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826162
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826162
    reference: chr 11
allele count: 1
allele frequency: 8.295037908323241e-6
allele num: 120554
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1033G>A
  hgvsp: ENSP00000434552.1:p.Gly345Ser
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly345Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9798
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

11-95826167-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826167
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826167
    reference: chr 11
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1028A>C
  hgvsp: ENSP00000434552.1:p.Asp343Ala
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6456
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp343Ala
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8612
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16490
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

11-95826180-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826180
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826180
    reference: chr 11
allele count: 1
allele frequency: 8.284592315212168e-6
allele num: 120706
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1015C>G
  hgvsp: ENSP00000434552.1:p.Pro339Ala
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6469
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro339Ala
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8614
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.49907057624273e-5
  allele num: 66708
  num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

11-95826186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826186
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826186
    reference: chr 11
allele count: 8
allele frequency: 6.62646610562587e-5
allele num: 120728
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1009G>A
  hgvsp: ENSP00000434552.1:p.Asp337Asn
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18196
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6476
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp337Asn
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66720
  num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

11-95826188-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826188
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826188
    reference: chr 11
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1007A>T
  hgvsp: ENSP00000434552.1:p.Gln336Leu
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln336Leu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 900
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8618
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

11-95826190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826190
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826190
    reference: chr 11
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1005G>A
  hgvsp: ENST00000524717.1:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys335Lys
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11568
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8618
  num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

11-95826193-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826193
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826193
    reference: chr 11
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.1002A>C
  hgvsp: ENST00000524717.1:c.1002A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile334Ile
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9804
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 900
  num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

11-95826200-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826200
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826200
    reference: chr 11
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.995C>T
  hgvsp: ENSP00000434552.1:p.Ala332Val
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala332Val
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 8.640055296353897e-5
  allele num: 11574
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

11-95826212-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826212
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826212
    reference: chr 11
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.983A>G
  hgvsp: ENSP00000434552.1:p.Asn328Ser
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn328Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8624
  num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-95826216-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826216
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826216
    reference: chr 11
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.979G>C
  hgvsp: ENSP00000434552.1:p.Glu327Gln
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu327Gln
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9806
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

11-95826231-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826231
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826231
    reference: chr 11
allele count: 2
allele frequency: 1.656177542232527e-5
allele num: 120760
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.964A>G
  hgvsp: ENSP00000434552.1:p.Ser322Gly
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 1949
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6494
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47136
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser322Gly
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11574
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16512
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

11-95826236-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826236
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826236
    reference: chr 11
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.959C>T
  hgvsp: ENSP00000434552.1:p.Pro320Leu
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro320Leu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 900
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.498531439189594e-5
  allele num: 66732
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

11-95826240-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826240
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826240
    reference: chr 11
allele count: 3
allele frequency: 2.484101748807631e-5
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.955C>A
  hgvsp: ENSP00000434552.1:p.Pro319Thr
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro319Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8626
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP

11-95826250-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826250
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826250
    reference: chr 11
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.945C>T
  hgvsp: ENST00000524717.1:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6483
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn315Asn
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8626
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11576
  num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

11-95826252-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826252
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826252
    reference: chr 11
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.943A>G
  hgvsp: ENSP00000434552.1:p.Asn315Asp
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6484
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn315Asp
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8626
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16512
  num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

11-95826261-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826261
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826261
    reference: chr 11
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.934G>A
  hgvsp: ENSP00000434552.1:p.Glu312Lys
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6485
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu312Lys
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 6.056201550387597e-5
  allele num: 16512
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9804
  num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff

11-95826271-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826271
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826271
    reference: chr 11
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.924A>G
  hgvsp: ENST00000524717.1:c.924A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6490
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47095
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu308Glu
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9804
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8626
  num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

11-95826295-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826295
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826295
    reference: chr 11
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.900A>G
  hgvsp: ENST00000524717.1:c.900A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6503
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47091
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln300Gln
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 6.056201550387597e-5
  allele num: 16512
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

11-95826302-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826302
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826302
    reference: chr 11
allele count: 2
allele frequency: 1.656177542232527e-5
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.893G>A
  hgvsp: ENSP00000434552.1:p.Gly298Glu
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly298Glu
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9800
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-95826308-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826308
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826308
    reference: chr 11
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.887A>T
  hgvsp: ENSP00000434552.1:p.Asp296Val
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6497
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47090
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp296Val
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9800
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11576
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

11-95826308-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826308
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826308
    reference: chr 11
allele count: 2
allele frequency: 1.656150113446283e-5
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.887A>C
  hgvsp: ENSP00000434552.1:p.Asp296Ala
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47090
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6497
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp296Ala
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 900
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11576
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-95826309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826309
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826309
    reference: chr 11
allele count: 3
allele frequency: 2.484307457890989e-5
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.886G>A
  hgvsp: ENSP00000434552.1:p.Asp296Asn
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47081
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6496
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp296Asn
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.511944360447536e-4
  allele num: 6614
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9800
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

11-95826310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826310
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826310
    reference: chr 11
allele count: 46
allele frequency: 3.80914526092645e-4
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.885C>T
  hgvsp: ENST00000524717.1:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6493
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp295Asp
num of homozygotes: 0
population: African
  type: Population
  allele count: 2
  allele frequency: 2.040816326530612e-4
  allele num: 9800
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 3
  allele frequency: 2.591568762957844e-4
  allele num: 11576
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

11-95826315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826315
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826315
    reference: chr 11
allele count: 11
allele frequency: 9.108825623954555e-5
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.880G>A
  hgvsp: ENSP00000434552.1:p.Gly294Arg
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly294Arg
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66736
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-95826316-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826316
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826316
    reference: chr 11
allele count: 3
allele frequency: 2.484225170169424e-5
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.879C>T
  hgvsp: ENST00000524717.1:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47112
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6508
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr293Tyr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11576
  num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

11-95826317-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826317
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826317
    reference: chr 11
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.878A>G
  hgvsp: ENSP00000434552.1:p.Tyr293Cys
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr293Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9800
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11576
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-95826322-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 95826322
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 95826322
    reference: chr 11
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184384
  ensembl protein: ENSP00000434552
  ensembl transcript: ENST00000524717
  gene symbol: MAML2
  hgvsc: ENST00000524717.1:c.873T>G
  hgvsp: ENSP00000434552.1:p.Asn291Lys
  variant of: http://identifiers.org/hgnc/16259
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn291Lys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9800
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.159554730983302e-4
  allele num: 8624
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3639
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13034
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3501
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3495
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2826
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3459
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.784184984299172e-4
allele num: 28024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

DP
type: SiteQuality
SIO_000300: 6.35513e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.358e1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-2

GenotypeQuality
all individuals: 3482
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
all individuals: 13302
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variant carriers: 0

GenotypeQuality
all individuals: 180
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variant carriers: 0

GenotypeQuality
all individuals: 598
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variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 205
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 3772
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variant carriers: 0

GenotypeQuality
all individuals: 3655
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variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 531
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variant carriers: 0

GenotypeQuality
all individuals: 22822
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variant carriers: 0

GenotypeQuality
all individuals: 3267
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.631873320258589e-5
allele num: 27534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2288
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.28836e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-1

QD
type: SiteQuality
SIO_000300: 1.057e1

MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

GenotypeQuality
all individuals: 789
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3641
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variant carriers: 0

GenotypeQuality
all individuals: 6658
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 681
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13924
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 419
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variant carriers: 0

GenotypeQuality
all individuals: 670
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variant carriers: 0

GenotypeQuality
all individuals: 3247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.704996706502305e-5
allele num: 21254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.39e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

DP
type: SiteQuality
SIO_000300: 5.73461e5

GenotypeQuality
all individuals: 386
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variant carriers: 0

GenotypeQuality
all individuals: 475
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 924
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 768
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variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
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variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
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variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48685
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584233706156332e-5
allele num: 63122
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.589366e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.633e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.928e0

FS
type: SiteQuality
SIO_000300: 1.907e0

QD
type: SiteQuality
SIO_000300: 1.124e1

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.712e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

GenotypeQuality
all individuals: 912
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 316
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580577859265347e-5
allele num: 63268
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

FS
type: SiteQuality
SIO_000300: 1.2066e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 6.015e1

DP
type: SiteQuality
SIO_000300: 6.596997e6

VQSLOD
type: SiteQuality
SIO_000300: -6.989e-1

QD
type: SiteQuality
SIO_000300: 1.081e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.495e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

GenotypeQuality
all individuals: 306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.75e1
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GenotypeQuality
all individuals: 3345
bin: 2.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 7.5e0
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GenotypeQuality
all individuals: 69
bin: 2.5e0
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GenotypeQuality
all individuals: 99
bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.192748091603053e-4
allele num: 8384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.995e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.051e0

DP
type: SiteQuality
SIO_000300: 6.598038e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

QD
type: SiteQuality
SIO_000300: 2.709e1

VQSLOD
type: SiteQuality
SIO_000300: -2.379e0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 404
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variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581577781995318e-5
allele num: 63228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.95e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e0

FS
type: SiteQuality
SIO_000300: 3.265e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e0

QD
type: SiteQuality
SIO_000300: 1.559e1

MQ
type: SiteQuality
SIO_000300: 6.027e1

DP
type: SiteQuality
SIO_000300: 6.598965e6

GenotypeQuality
all individuals: 3148
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
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variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
all individuals: 410
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variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
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variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48689
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 886
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.25e1
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GenotypeQuality
all individuals: 648
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variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.68452136563181e-4
allele num: 63326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.365287235900122e-4
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.042205582028591e-4
allele num: 14690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9368
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.15473441108545e-3
allele num: 866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.023e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 6.605165e6

FS
type: SiteQuality
SIO_000300: 1.485e0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 585
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variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
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GenotypeQuality
all individuals: 99
bin: 5.75e1
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GenotypeQuality
all individuals: 805
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
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variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 3.25e1
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GenotypeQuality
all individuals: 48686
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 323
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variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571733936879165e-5
allele num: 63624
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

FS
type: SiteQuality
SIO_000300: 6.13e-1

QD
type: SiteQuality
SIO_000300: 1.026e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 6.629606e6

MQRankSum
type: SiteQuality
SIO_000300: 9.52e-1

GenotypeQuality
all individuals: 270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 262
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GenotypeQuality
all individuals: 239
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GenotypeQuality
all individuals: 135
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GenotypeQuality
all individuals: 343
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GenotypeQuality
all individuals: 48656
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GenotypeQuality
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GenotypeQuality
all individuals: 2102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.196172248803828e-4
allele num: 8360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.046e0

FS
type: SiteQuality
SIO_000300: 2.095e0

QD
type: SiteQuality
SIO_000300: 4.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.784e0

DP
type: SiteQuality
SIO_000300: 6.662459e6

VQSLOD
type: SiteQuality
SIO_000300: -5.75e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

MQ
type: SiteQuality
SIO_000300: 6.013e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

GenotypeQuality
all individuals: 1179
bin: 5.75e1
variant carriers: 124

GenotypeQuality
all individuals: 1323
bin: 2.75e1
variant carriers: 164

GenotypeQuality
all individuals: 1076
bin: 7.75e1
variant carriers: 103

GenotypeQuality
all individuals: 1471
bin: 7.5e0
variant carriers: 176

GenotypeQuality
all individuals: 1055
bin: 8.75e1
variant carriers: 102

GenotypeQuality
all individuals: 22065
bin: 9.75e1
variant carriers: 13023

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 89

GenotypeQuality
all individuals: 1360
bin: 1.25e1
variant carriers: 176

GenotypeQuality
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bin: 2.25e1
variant carriers: 196

GenotypeQuality
all individuals: 1267
bin: 1.75e1
variant carriers: 169

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 1091
bin: 8.25e1
variant carriers: 102

GenotypeQuality
all individuals: 1195
bin: 4.25e1
variant carriers: 123

GenotypeQuality
all individuals: 1350
bin: 6.25e1
variant carriers: 125

GenotypeQuality
all individuals: 1157
bin: 5.25e1
variant carriers: 127

GenotypeQuality
all individuals: 1311
bin: 3.75e1
variant carriers: 149

GenotypeQuality
all individuals: 1086
bin: 7.25e1
variant carriers: 93

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 106

GenotypeQuality
all individuals: 1252
bin: 4.75e1
variant carriers: 162

South Asian
type: Population
allele count: 4292
allele frequency: 3.491133886448674e-1
allele num: 12294
num of homozygotes: 451

Other
type: Population
allele count: 142
allele frequency: 2.275641025641026e-1
allele num: 624
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 694
allele frequency: 1.618470149253731e-1
allele num: 4288
num of homozygotes: 35

East Asian
type: Population
allele count: 865
allele frequency: 1.272433068549573e-1
allele num: 6798
num of homozygotes: 48

Latino
type: Population
allele count: 897
allele frequency: 1.179952644041042e-1
allele num: 7602
num of homozygotes: 32

European (Non-Finnish)
type: Population
allele count: 8554
allele frequency: 2.019548588157522e-1
allele num: 42356
num of homozygotes: 472

African
type: Population
allele count: 407
allele frequency: 7.162970784934881e-2
allele num: 5682
num of homozygotes: 4

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

QD
type: SiteQuality
SIO_000300: 7.56e0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.585e-1

DP
type: SiteQuality
SIO_000300: 8.894632e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 7.5e0
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GenotypeQuality
all individuals: 1157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16290
bin: 2.5e0
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GenotypeQuality
all individuals: 1055
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GenotypeQuality
all individuals: 1323
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 9.25e1
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GenotypeQuality
all individuals: 1267
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7602
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.759943681802182e-4
allele num: 5682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.585e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

DP
type: SiteQuality
SIO_000300: 8.894632e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

QD
type: SiteQuality
SIO_000300: 7.56e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 206

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 264

GenotypeQuality
all individuals: 1292
bin: 3.25e1
variant carriers: 433

GenotypeQuality
all individuals: 1360
bin: 1.25e1
variant carriers: 437

GenotypeQuality
all individuals: 16290
bin: 2.5e0
variant carriers: 397

GenotypeQuality
all individuals: 1267
bin: 1.75e1
variant carriers: 428

GenotypeQuality
all individuals: 1086
bin: 7.25e1
variant carriers: 266

GenotypeQuality
all individuals: 1311
bin: 3.75e1
variant carriers: 378

GenotypeQuality
all individuals: 22065
bin: 9.75e1
variant carriers: 5443

GenotypeQuality
all individuals: 1076
bin: 7.75e1
variant carriers: 232

GenotypeQuality
all individuals: 1179
bin: 5.75e1
variant carriers: 357

GenotypeQuality
all individuals: 1471
bin: 7.5e0
variant carriers: 445

GenotypeQuality
all individuals: 1195
bin: 4.25e1
variant carriers: 396

GenotypeQuality
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bin: 2.25e1
variant carriers: 420

GenotypeQuality
all individuals: 1091
bin: 8.25e1
variant carriers: 228

GenotypeQuality
all individuals: 1350
bin: 6.25e1
variant carriers: 333

GenotypeQuality
all individuals: 1157
bin: 5.25e1
variant carriers: 377

GenotypeQuality
all individuals: 1252
bin: 4.75e1
variant carriers: 412

GenotypeQuality
all individuals: 1055
bin: 8.75e1
variant carriers: 210

European (Non-Finnish)
type: Population
allele count: 4391
allele frequency: 1.036689016904335e-1
allele num: 42356
num of homozygotes: 1

Other
type: Population
allele count: 86
allele frequency: 1.378205128205128e-1
allele num: 624
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 494
allele frequency: 1.15205223880597e-1
allele num: 4288
num of homozygotes: 3

African
type: Population
allele count: 768
allele frequency: 1.351636747624076e-1
allele num: 5682
num of homozygotes: 0

East Asian
type: Population
allele count: 2182
allele frequency: 3.209767578699618e-1
allele num: 6798
num of homozygotes: 36

South Asian
type: Population
allele count: 1357
allele frequency: 1.10379046689442e-1
allele num: 12294
num of homozygotes: 0

Latino
type: Population
allele count: 1090
allele frequency: 1.433833201789003e-1
allele num: 7602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.585e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

DP
type: SiteQuality
SIO_000300: 8.894632e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

QD
type: SiteQuality
SIO_000300: 7.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

GenotypeQuality
all individuals: 1179
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1360
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 1634
bin: 2.25e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 1252
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GenotypeQuality
all individuals: 1267
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1323
bin: 2.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1086
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variant carriers: 4

GenotypeQuality
all individuals: 22065
bin: 9.75e1
variant carriers: 65

GenotypeQuality
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GenotypeQuality
all individuals: 1292
bin: 3.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1471
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GenotypeQuality
all individuals: 1055
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1311
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1076
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1195
bin: 4.25e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 4.721881197469072e-4
allele num: 42356
num of homozygotes: 0

East Asian
type: Population
allele count: 99
allele frequency: 1.456310679611651e-2
allele num: 6798
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.880429477794046e-4
allele num: 12294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.166044776119403e-3
allele num: 4288
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.519887363604365e-4
allele num: 5682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

DP
type: SiteQuality
SIO_000300: 8.894632e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.585e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 7.56e0

GenotypeQuality
all individuals: 1157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22065
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 16290
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 7.5e0
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GenotypeQuality
all individuals: 1055
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1007
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variant carriers: 1

GenotypeQuality
all individuals: 1086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
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variant carriers: 1

GenotypeQuality
all individuals: 1360
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variant carriers: 0

GenotypeQuality
all individuals: 1292
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variant carriers: 1

GenotypeQuality
all individuals: 1323
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
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variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1350
bin: 6.25e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.416564359240722e-4
allele num: 42356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4288
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.942041776993233e-4
allele num: 6798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.440214738897023e-4
allele num: 12294
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.585e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

DP
type: SiteQuality
SIO_000300: 8.894632e6

QD
type: SiteQuality
SIO_000300: 7.56e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.5e0
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GenotypeQuality
all individuals: 570
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variant carriers: 2

GenotypeQuality
all individuals: 494
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GenotypeQuality
all individuals: 256
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 234
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variant carriers: 0

GenotypeQuality
all individuals: 199
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variant carriers: 0

GenotypeQuality
all individuals: 266
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variant carriers: 0

GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 146
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variant carriers: 0

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 112
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variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.962085308056872e-4
allele num: 3376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.012048192771084e-3
allele num: 332
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.332e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.632e0

QD
type: SiteQuality
SIO_000300: 8.07e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 1.927e0

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

MQRankSum
type: SiteQuality
SIO_000300: 7.68e-1

DP
type: SiteQuality
SIO_000300: 2.997742e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

GenotypeQuality
all individuals: 11787
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variant carriers: 0

GenotypeQuality
all individuals: 568
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variant carriers: 0

GenotypeQuality
all individuals: 469
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GenotypeQuality
all individuals: 25962
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 574
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GenotypeQuality
all individuals: 518
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GenotypeQuality
all individuals: 575
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GenotypeQuality
all individuals: 1401
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GenotypeQuality
all individuals: 878
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variant carriers: 0

GenotypeQuality
all individuals: 446
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GenotypeQuality
all individuals: 1011
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GenotypeQuality
all individuals: 803
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GenotypeQuality
all individuals: 1124
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GenotypeQuality
all individuals: 2291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.34543578196829e-5
allele num: 42636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.767e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 4.558431e6

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.146e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.76e-2

GenotypeQuality
all individuals: 589
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 439
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GenotypeQuality
all individuals: 1028
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 71
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
all individuals: 2578
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 290
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variant carriers: 0

GenotypeQuality
all individuals: 328
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GenotypeQuality
all individuals: 1619
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.741848492277519e-4
allele num: 16316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.662e0

DP
type: SiteQuality
SIO_000300: 3.698677e6

FS
type: SiteQuality
SIO_000300: 1.251e0

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.995e1

MQRankSum
type: SiteQuality
SIO_000300: -5.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeDepth
all individuals: 2979
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
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variant carriers: 0

GenotypeQuality
all individuals: 127
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GenotypeQuality
all individuals: 389
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GenotypeQuality
all individuals: 184
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GenotypeQuality
all individuals: 386
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GenotypeQuality
all individuals: 6134
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GenotypeQuality
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GenotypeQuality
all individuals: 1557
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GenotypeQuality
all individuals: 332
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GenotypeQuality
all individuals: 546
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GenotypeQuality
all individuals: 1586
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GenotypeQuality
all individuals: 197
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GenotypeQuality
all individuals: 1597
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GenotypeQuality
all individuals: 231
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GenotypeQuality
all individuals: 997
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GenotypeQuality
all individuals: 167
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GenotypeQuality
all individuals: 1200
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GenotypeQuality
all individuals: 40857
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GenotypeQuality
all individuals: 2473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.12538666503323e-5
allele num: 65302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.002004008016032e-4
allele num: 9980
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.281e0

VQSLOD
type: SiteQuality
SIO_000300: -1.385e1

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.1667e1

DP
type: SiteQuality
SIO_000300: 3.702006e6

MQ
type: SiteQuality
SIO_000300: 5.811e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.582e0

QD
type: SiteQuality
SIO_000300: 8.7e-1

GenotypeDepth
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65744
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10104
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
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allele frequency: 2.262443438914027e-3
allele num: 11492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.32e-1

MQ
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SIO_000300: 5.957e1

QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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SIO_000300: -2.43e-1

BaseQRankSum
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SIO_000300: 3.8e0

ClippingRankSum
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SIO_000300: -9.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 3.711594e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 8
allele frequency: 7.908264136022143e-4
allele num: 10116
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.520403819254394e-5
allele num: 65772
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: 2.08e-1

VQSLOD
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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SIO_000300: 5.941e1

BaseQRankSum
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SIO_000300: -2.016e0

QD
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SIO_000300: 1.083e1

DP
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SIO_000300: 3.708538e6

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.076441635778088e-5
allele num: 65828
num of homozygotes: 0

DP
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InbreedingCoeff
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ClippingRankSum
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QD
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BaseQRankSum
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VQSLOD
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MQ
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SIO_000300: 5.954e1

ReadPosRankSum
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SIO_000300: -4.39e-1

MQRankSum
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SIO_000300: -1.13e-1

FS
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SIO_000300: 5.23e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65898
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InbreedingCoeff
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SIO_000300: -3.0e-4

DP
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VQSLOD
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BaseQRankSum
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QD
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FS
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ClippingRankSum
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MQRankSum
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SIO_000300: -1.44e-1

ReadPosRankSum
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SIO_000300: -8.26e-1

MQ
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SIO_000300: 5.892e1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1096
bin: 8.75e1
variant carriers: 0

African
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allele count: 11
allele frequency: 1.082038166437143e-3
allele num: 10166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -8.36e-1

MQ
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.516576177621402e-5
allele num: 65938
num of homozygotes: 0

FS
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QD
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 1.961553550411926e-4
allele num: 10196
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East Asian
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Other
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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DP
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VQSLOD
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FS
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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allele num: 11512
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.218026796589525e-4
allele num: 16420
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African
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Other
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MQ
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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SIO_000300: 8.58e-1

VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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allele num: 8526
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African
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Other
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Latino
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South Asian
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ReadPosRankSum
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BaseQRankSum
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DP
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VQSLOD
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FS
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Latino
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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MQRankSum
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FS
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 9.09e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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African
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Latino
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East Asian
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South Asian
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QD
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DP
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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European (Non-Finnish)
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allele num: 66066
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European (Finnish)
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African
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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QD
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VQSLOD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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Other
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East Asian
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European (Finnish)
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South Asian
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InbreedingCoeff
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VQSLOD
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FS
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QD
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MQRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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African
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Latino
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Other
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-2

QD
type: SiteQuality
SIO_000300: 1.116e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

FS
type: SiteQuality
SIO_000300: 3.582e0

DP
type: SiteQuality
SIO_000300: 3.705756e6

VQSLOD
type: SiteQuality
SIO_000300: -1.973e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.229e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

Latino
type: Population
allele count: 2
allele frequency: 1.896813353566009e-4
allele num: 10544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9046
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.270648030495553e-4
allele num: 7870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13096
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.45e0

QD
type: SiteQuality
SIO_000300: 1.351e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.258306e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

East Asian
type: Population
allele count: 4
allele frequency: 4.99001996007984e-4
allele num: 8016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13456
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.401e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 1.494e0

DP
type: SiteQuality
SIO_000300: 1.32543e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.22e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573613646377541e-5
allele num: 63548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.357021e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

FS
type: SiteQuality
SIO_000300: 5.497e0

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

VQSLOD
type: SiteQuality
SIO_000300: 9.82e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.191895113230036e-4
allele num: 8390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14430
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e0

QD
type: SiteQuality
SIO_000300: 1.087e1

DP
type: SiteQuality
SIO_000300: 1.427285e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e0

FS
type: SiteQuality
SIO_000300: 1.276e0

VQSLOD
type: SiteQuality
SIO_000300: -7.03e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65104
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.792555359326178e-5
allele num: 14722
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.313000000000001e0

DP
type: SiteQuality
SIO_000300: 1.451232e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: -3.797e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.983e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e0

QD
type: SiteQuality
SIO_000300: 1.189e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.767e0

QD
type: SiteQuality
SIO_000300: 1.276e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

DP
type: SiteQuality
SIO_000300: 1.497644e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510026576467746e-5
allele num: 66224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

DP
type: SiteQuality
SIO_000300: 1.503853e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.519e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66234
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.265664160401002e-5
allele num: 15960
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.604e0

QD
type: SiteQuality
SIO_000300: 1.235e1

DP
type: SiteQuality
SIO_000300: 1.505377e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.61e-1

FS
type: SiteQuality
SIO_000300: 1.3035e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3035e1

QD
type: SiteQuality
SIO_000300: 1.235e1

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.604e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.61e-1

DP
type: SiteQuality
SIO_000300: 1.505377e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.497e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.337e1

DP
type: SiteQuality
SIO_000300: 1.521604e6

South Asian
type: Population
allele count: 2
allele frequency: 1.223241590214067e-4
allele num: 16350
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.554931016862545e-4
allele num: 66538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.337e1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 6.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.497e0

DP
type: SiteQuality
SIO_000300: 1.521604e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.411e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.754e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.524836e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

VQSLOD
type: SiteQuality
SIO_000300: -1.73e0

FS
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: -9.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.224e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.347e0

DP
type: SiteQuality
SIO_000300: 1.525309e6

QD
type: SiteQuality
SIO_000300: 1.648e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

DP
type: SiteQuality
SIO_000300: 1.526119e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.045e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.319e0

QD
type: SiteQuality
SIO_000300: 1.508e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.527527e6

VQSLOD
type: SiteQuality
SIO_000300: -9.347e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.845548152634767e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.624e0

FS
type: SiteQuality
SIO_000300: 3.486e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.528081e6

QD
type: SiteQuality
SIO_000300: 1.245e1

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.051e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.52e-1

QD
type: SiteQuality
SIO_000300: 1.083e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.965e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.542e0

DP
type: SiteQuality
SIO_000300: 1.527964e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.325e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.242e1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.52813e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.859e0

FS
type: SiteQuality
SIO_000300: 3.408e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 7.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

FS
type: SiteQuality
SIO_000300: 2.438e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

QD
type: SiteQuality
SIO_000300: 1.305e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 6.929999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.528201e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.528511e6

QD
type: SiteQuality
SIO_000300: 1.288e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.584e0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.84e-1

FS
type: SiteQuality
SIO_000300: 1.146e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.528717e6

FS
type: SiteQuality
SIO_000300: 4.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.849e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.38e0

QD
type: SiteQuality
SIO_000300: 1.606e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.806e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.193e0

DP
type: SiteQuality
SIO_000300: 1.528695e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.586e1

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.359e0

QD
type: SiteQuality
SIO_000300: 1.458e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

DP
type: SiteQuality
SIO_000300: 1.528773e6

VQSLOD
type: SiteQuality
SIO_000300: 5.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.005e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 1.528924e6

VQSLOD
type: SiteQuality
SIO_000300: -1.102e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.36e0

FS
type: SiteQuality
SIO_000300: 1.057e0

QD
type: SiteQuality
SIO_000300: 1.053e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.83e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495459585818323e-5
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.426e0

QD
type: SiteQuality
SIO_000300: 1.221e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 2.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

DP
type: SiteQuality
SIO_000300: 1.529063e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.13e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

DP
type: SiteQuality
SIO_000300: 1.528952e6

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.059e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.751e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.571e0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.529035e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.096e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.027e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.702e0

VQSLOD
type: SiteQuality
SIO_000300: -2.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.788e1

DP
type: SiteQuality
SIO_000300: 1.528953e6

FS
type: SiteQuality
SIO_000300: 2.388e0

QD
type: SiteQuality
SIO_000300: 1.129e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

FS
type: SiteQuality
SIO_000300: 4.818e0

QD
type: SiteQuality
SIO_000300: 1.123e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

DP
type: SiteQuality
SIO_000300: 1.529075e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: -9.464e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.637e0

FS
type: SiteQuality
SIO_000300: 6.016e0

QD
type: SiteQuality
SIO_000300: 1.227e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.85e0

DP
type: SiteQuality
SIO_000300: 1.529359e6

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

DP
type: SiteQuality
SIO_000300: 1.529644e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.776e0

FS
type: SiteQuality
SIO_000300: 1.796e0

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

QD
type: SiteQuality
SIO_000300: 1.123e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.081e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 1.126e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

QD
type: SiteQuality
SIO_000300: 1.383e1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

DP
type: SiteQuality
SIO_000300: 1.529992e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.97e0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.383e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 1.126e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.97e0

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

DP
type: SiteQuality
SIO_000300: 1.529992e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.37e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.530058e6

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 38
allele frequency: 5.694078158714936e-4
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.371e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.534325e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.638562543192813e-4
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.82e-1

FS
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 1.531174e6

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

QD
type: SiteQuality
SIO_000300: 1.201e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

DP
type: SiteQuality
SIO_000300: 1.530726e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.404e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 1.528e1

FS
type: SiteQuality
SIO_000300: 1.613e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.008e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.39e0

DP
type: SiteQuality
SIO_000300: 1.530566e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.278e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.981e1