12-49724367-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724367
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724367
    reference: chr 12
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1739C>T
  hgvsp: ENSP00000447509.1:p.Pro580Leu
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1739C>T
  hgvsp: ENSP00000257909.3:p.Pro580Leu
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.852+11C>T
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2884
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11691
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro580Leu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

12-49724373-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724373
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724373
    reference: chr 12
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1745C>T
  hgvsp: ENSP00000447509.1:p.Pro582Leu
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1745C>T
  hgvsp: ENSP00000257909.3:p.Pro582Leu
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.852+17C>T
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2884
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro582Leu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

12-49724377-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724377
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724377
    reference: chr 12
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.852+21A>G
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1749A>G
  hgvsp: ENST00000551245.1:c.1749A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1749A>G
  hgvsp: ENST00000257909.3:c.1749A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29727
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 285
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro583Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-49724394-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724394
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724394
    reference: chr 12
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1766T>C
  hgvsp: ENSP00000257909.3:p.Leu589Pro
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1766T>C
  hgvsp: ENSP00000447509.1:p.Leu589Pro
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.852+38T>C
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16035
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu589Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

12-49724403-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724403
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724403
    reference: chr 12
allele count: 4
allele frequency: 3.295381522795802e-5
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1775A>G
  hgvsp: ENSP00000447509.1:p.Tyr592Cys
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-41A>G
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1775A>G
  hgvsp: ENSP00000257909.3:p.Tyr592Cys
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr592Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

12-49724408-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724408
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724408
    reference: chr 12
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1780A>G
  hgvsp: ENSP00000447509.1:p.Arg594Gly
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1780A>G
  hgvsp: ENSP00000257909.3:p.Arg594Gly
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-36A>G
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg594Gly
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

12-49724412-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724412
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724412
    reference: chr 12
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-32T>C
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1784T>C
  hgvsp: ENSP00000447509.1:p.Ile595Thr
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1784T>C
  hgvsp: ENSP00000257909.3:p.Ile595Thr
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41069
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile595Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/12-49724417-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724417
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724417
    reference: chr 12
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1789C>A
  hgvsp: ENSP00000447509.1:p.Pro597Thr
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-27C>A
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1789C>A
  hgvsp: ENSP00000257909.3:p.Pro597Thr
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2883
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41075
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro597Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-49724417-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724417
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724417
    reference: chr 12
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-27C>T
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1789C>T
  hgvsp: ENSP00000257909.3:p.Pro597Ser
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1789C>T
  hgvsp: ENSP00000447509.1:p.Pro597Ser
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 141
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genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9646
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genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2883
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41075
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro597Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-49724424-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724424
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724424
    reference: chr 12
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-20T>C
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1796T>C
  hgvsp: ENSP00000447509.1:p.Ile599Thr
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1796T>C
  hgvsp: ENSP00000257909.3:p.Ile599Thr
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 11692
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41078
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ile599Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

12-49724427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724427
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724427
    reference: chr 12
allele count: 4
allele frequency: 3.29549012176836e-5
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-17C>T
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1799C>T
  hgvsp: ENSP00000447509.1:p.Pro600Leu
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1799C>T
  hgvsp: ENSP00000257909.3:p.Pro600Leu
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 2361
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 12
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genotype quality: GenotypeQuality
  all individuals: 11687
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41062
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro600Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

12-49724433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724433
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724433
    reference: chr 12
allele count: 3
allele frequency: 2.471658317954126e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1805C>T
  hgvsp: ENSP00000447509.1:p.Ser602Phe
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1805C>T
  hgvsp: ENSP00000257909.3:p.Ser602Phe
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-11C>T
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16044
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genotype depth: GenotypeDepth
  all individuals: 34
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 11685
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 41023
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genotype quality: GenotypeQuality
  all individuals: 310
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser602Phe
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/12-49724434-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724434
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724434
    reference: chr 12
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-10C>A
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1806C>A
  hgvsp: ENST00000257909.3:c.1806C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1806C>A
  hgvsp: ENST00000551245.1:c.1806C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11687
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser602Ser
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

12-49724438-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724438
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724438
    reference: chr 12
allele count: 4
allele frequency: 3.295707341188102e-5
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1810C>G
  hgvsp: ENSP00000257909.3:p.Arg604Gly
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-6C>G
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1810C>G
  hgvsp: ENSP00000447509.1:p.Arg604Gly
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg604Gly
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

12-49724438-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724438
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724438
    reference: chr 12
allele count: 3
allele frequency: 2.471780505891077e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1810C>T
  hgvsp: ENSP00000447509.1:p.Arg604Cys
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1810C>T
  hgvsp: ENSP00000257909.3:p.Arg604Cys
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-6C>T
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg604Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

12-49724439-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724439
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724439
    reference: chr 12
allele count: 5
allele frequency: 4.119769952045878e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-5G>A
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1811G>A
  hgvsp: ENSP00000447509.1:p.Arg604His
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1811G>A
  hgvsp: ENSP00000257909.3:p.Arg604His
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29748
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg604His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

12-49724439-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724439
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724439
    reference: chr 12
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1811G>T
  hgvsp: ENSP00000447509.1:p.Arg604Leu
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-5G>T
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1811G>T
  hgvsp: ENSP00000257909.3:p.Arg604Leu
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg604Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/12-49724440-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724440
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724440
    reference: chr 12
allele count: 7
allele frequency: 5.767582888405511e-5
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1812C>A
  hgvsp: ENST00000257909.3:c.1812C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1812C>A
  hgvsp: ENST00000551245.1:c.1812C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.853-4C>A
  variant of: http://identifiers.org/hgnc/12327
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40993
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
hgvs: c.853-4C>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

12-49724455-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724455
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724455
    reference: chr 12
allele count: 2
allele frequency: 1.64836976230508e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1827G>A
  hgvsp: ENST00000551245.1:c.1827G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1827G>A
  hgvsp: ENST00000257909.3:c.1827G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.864G>A
  hgvsp: ENST00000547923.1:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
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genotype quality: GenotypeQuality
  all individuals: 2360
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genotype quality: GenotypeQuality
  all individuals: 40896
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 921
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genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 90
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genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1074
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu609Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

12-49724465-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724465
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724465
    reference: chr 12
allele count: 2
allele frequency: 1.648777431534517e-5
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1837C>T
  hgvsp: ENSP00000447509.1:p.Pro613Ser
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1837C>T
  hgvsp: ENSP00000257909.3:p.Pro613Ser
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.874C>T
  hgvsp: ENSP00000447421.1:p.Pro292Ser
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro613Ser
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

12-49724472-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724472
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724472
    reference: chr 12
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.881C>G
  hgvsp: ENSP00000447421.1:p.Pro294Arg
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1844C>G
  hgvsp: ENSP00000447509.1:p.Pro615Arg
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1844C>G
  hgvsp: ENSP00000257909.3:p.Pro615Arg
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40826
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro615Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

12-49724474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724474
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724474
    reference: chr 12
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1846C>T
  hgvsp: ENSP00000257909.3:p.Pro616Ser
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1846C>T
  hgvsp: ENSP00000447509.1:p.Pro616Ser
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.883C>T
  hgvsp: ENSP00000447421.1:p.Pro295Ser
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11640
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40662
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro616Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-49724475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724475
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724475
    reference: chr 12
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.884C>T
  hgvsp: ENSP00000447421.1:p.Pro295Leu
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1847C>T
  hgvsp: ENSP00000447509.1:p.Pro616Leu
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1847C>T
  hgvsp: ENSP00000257909.3:p.Pro616Leu
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 301
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40695
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11639
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1070
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro616Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-49724483-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724483
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724483
    reference: chr 12
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1855C>A
  hgvsp: ENSP00000257909.3:p.Pro619Thr
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1855C>A
  hgvsp: ENSP00000447509.1:p.Pro619Thr
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.892C>A
  hgvsp: ENSP00000447421.1:p.Pro298Thr
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2859
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 82
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genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2350
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genotype quality: GenotypeQuality
  all individuals: 11619
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genotype quality: GenotypeQuality
  all individuals: 275
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro619Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

12-49724485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724485
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724485
    reference: chr 12
allele count: 5
allele frequency: 4.125412541254125e-5
allele num: 121200
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1857C>T
  hgvsp: ENST00000257909.3:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.894C>T
  hgvsp: ENST00000547923.1:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1857C>T
  hgvsp: ENST00000551245.1:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15981
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 40470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11598
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro619Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP

12-49724488-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724488
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724488
    reference: chr 12
allele count: 2
allele frequency: 1.650573574317075e-5
allele num: 121170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1860G>A
  hgvsp: ENST00000551245.1:c.1860G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1860G>A
  hgvsp: ENST00000257909.3:c.1860G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.897G>A
  hgvsp: ENST00000547923.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11591
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly620Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-49724489-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724489
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724489
    reference: chr 12
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1861C>A
  hgvsp: ENSP00000257909.3:p.Pro621Thr
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1861C>A
  hgvsp: ENSP00000447509.1:p.Pro621Thr
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.898C>A
  hgvsp: ENSP00000447421.1:p.Pro300Thr
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
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genotype quality: GenotypeQuality
  all individuals: 40496
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro621Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

12-49724497-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724497
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724497
    reference: chr 12
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.906G>A
  hgvsp: ENST00000547923.1:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1869G>A
  hgvsp: ENST00000551245.1:c.1869G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1869G>A
  hgvsp: ENST00000257909.3:c.1869G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11590
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2828
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genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln623Gln
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-49724498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724498
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724498
    reference: chr 12
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.907C>T
  hgvsp: ENSP00000447421.1:p.Pro303Ser
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1870C>T
  hgvsp: ENSP00000447509.1:p.Pro624Ser
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1870C>T
  hgvsp: ENSP00000257909.3:p.Pro624Ser
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40277
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11562
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro624Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

12-49724507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724507
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724507
    reference: chr 12
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.916C>T
  hgvsp: ENSP00000447421.1:p.Gln306Ter
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1879C>T
  hgvsp: ENSP00000257909.3:p.Gln627Ter
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1879C>T
  hgvsp: ENSP00000447509.1:p.Gln627Ter
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2821
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln627Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

12-49724512-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724512
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724512
    reference: chr 12
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1884G>T
  hgvsp: ENST00000257909.3:c.1884G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1884G>T
  hgvsp: ENST00000551245.1:c.1884G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.921G>T
  hgvsp: ENST00000547923.1:c.921G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly628Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-49724534-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724534
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724533
    reference: chr 12
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1907delG
  hgvsp: ENSP00000447509.1:p.Cys636SerfsTer4
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.944delG
  hgvsp: ENSP00000447421.1:p.Cys315SerfsTer4
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1907delG
  hgvsp: ENSP00000257909.3:p.Cys636SerfsTer4
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
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genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11477
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys636SerfsTer4
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: TG
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/12-49724536-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724536
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724536
    reference: chr 12
allele count: 1
allele frequency: 8.278008642241022e-6
allele num: 120802
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1908C>A
  hgvsp: ENSP00000257909.3:p.Cys636Ter
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1908C>A
  hgvsp: ENSP00000447509.1:p.Cys636Ter
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.945C>A
  hgvsp: ENSP00000447421.1:p.Cys315Ter
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2806
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11475
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys636Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

12-49724537-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724537
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724537
    reference: chr 12
allele count: 1
allele frequency: 8.277186418792524e-6
allele num: 120814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.946C>T
  hgvsp: ENSP00000447421.1:p.Pro316Ser
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1909C>T
  hgvsp: ENSP00000257909.3:p.Pro637Ser
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1909C>T
  hgvsp: ENSP00000447509.1:p.Pro637Ser
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40495
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11467
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro637Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

12-49724539-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724539
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724539
    reference: chr 12
allele count: 1
allele frequency: 8.278968109414843e-6
allele num: 120788
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.948T>G
  hgvsp: ENST00000547923.1:c.948T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1911T>G
  hgvsp: ENST00000551245.1:c.1911T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1911T>G
  hgvsp: ENST00000257909.3:c.1911T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11472
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40547
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro637Pro
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-49724542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724542
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724542
    reference: chr 12
allele count: 1
allele frequency: 8.279927799029592e-6
allele num: 120774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1914G>A
  hgvsp: ENST00000551245.1:c.1914G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1914G>A
  hgvsp: ENST00000257909.3:c.1914G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.951G>A
  hgvsp: ENST00000547923.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11458
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40586
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg638Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

12-49724567-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724567
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724567
    reference: chr 12
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1939T>G
  hgvsp: ENSP00000447509.1:p.Cys647Gly
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.976T>G
  hgvsp: ENSP00000447421.1:p.Cys326Gly
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1939T>G
  hgvsp: ENSP00000257909.3:p.Cys647Gly
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11483
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys647Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/12-49724571-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724571
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724571
    reference: chr 12
allele count: 7
allele frequency: 5.798542080848244e-5
allele num: 120720
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1943C>A
  hgvsp: ENSP00000257909.3:p.Thr648Asn
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1943C>A
  hgvsp: ENSP00000447509.1:p.Thr648Asn
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.980C>A
  hgvsp: ENSP00000447421.1:p.Thr327Asn
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40849
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr648Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

12-49724573-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724573
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724573
    reference: chr 12
allele count: 4
allele frequency: 3.313782019418762e-5
allele num: 120708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1945C>G
  hgvsp: ENSP00000447509.1:p.Leu649Val
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1945C>G
  hgvsp: ENSP00000257909.3:p.Leu649Val
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.982C>G
  hgvsp: ENSP00000447421.1:p.Leu328Val
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15857
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11483
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu649Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-49724581-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724581
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724581
    reference: chr 12
allele count: 3
allele frequency: 2.48562480322137e-5
allele num: 120694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.990T>C
  hgvsp: ENST00000547923.1:c.990T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1953T>C
  hgvsp: ENST00000551245.1:c.1953T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1953T>C
  hgvsp: ENST00000257909.3:c.1953T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11477
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40806
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His651His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

12-49724583-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724583
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724583
    reference: chr 12
allele count: 14
allele frequency: 1.160015908789606e-4
allele num: 120688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1955G>A
  hgvsp: ENSP00000447509.1:p.Arg652Lys
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1955G>A
  hgvsp: ENSP00000257909.3:p.Arg652Lys
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.992G>A
  hgvsp: ENSP00000447421.1:p.Arg331Lys
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15857
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg652Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

12-49724593-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49724593
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49724593
    reference: chr 12
allele count: 3
allele frequency: 2.485871961021528e-5
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447509
  ensembl transcript: ENST00000551245
  gene symbol: TROAP
  hgvsc: ENST00000551245.1:c.1965G>A
  hgvsp: ENST00000551245.1:c.1965G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000257909
  ensembl transcript: ENST00000257909
  gene symbol: TROAP
  hgvsc: ENST00000257909.3:c.1965G>A
  hgvsp: ENST00000257909.3:c.1965G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135451
  ensembl protein: ENSP00000447421
  ensembl transcript: ENST00000547923
  gene symbol: TROAP
  hgvsc: ENST00000547923.1:c.1002G>A
  hgvsp: ENST00000547923.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12327
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40831
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu655Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

15-43427742-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427742
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427742
    reference: chr 15
allele count: 1
allele frequency: 8.29737802854298e-6
allele num: 120520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.120T>C
  hgvsp: ENST00000564494.1:c.120T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.-66T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.-66T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.325T>C
  hgvsp: ENST00000260403.2:c.325T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.286T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.-66T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4402A>G
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13147
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu109Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

15-43427749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427749
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427749
    reference: chr 15
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4409G>A
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.127C>T
  hgvsp: ENSP00000458098.1:p.Ser43Phe
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.-59C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.332C>T
  hgvsp: ENSP00000260403.2:p.Ser111Phe
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.-59C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.-59C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.293C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser111Phe
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-43427750-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427750
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427750
    reference: chr 15
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.-58C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.-58C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.-58C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*32C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.128C>A
  hgvsp: ENST00000564494.1:c.128C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*32C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.333C>A
  hgvsp: ENST00000260403.2:c.333C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.294C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*32C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*32C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4410G>T
  variant of: http://identifiers.org/hgnc/3381
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser111Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-43427757-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427757
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427757
    reference: chr 15
allele count: 30
allele frequency: 2.484677820109326e-4
allele num: 120740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.135C>T
  hgvsp: ENSP00000458098.1:p.His46Tyr
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4417G>A
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.340C>T
  hgvsp: ENSP00000260403.2:p.His114Tyr
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.301C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13578
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His114Tyr
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

15-43427769-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427769
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427769
    reference: chr 15
allele count: 2
allele frequency: 1.65582103886212e-5
allele num: 120786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.147T>C
  hgvsp: ENSP00000458098.1:p.Trp50Arg
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*51T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.-39T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*51T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4429A>G
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*51T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.313T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.352T>C
  hgvsp: ENSP00000260403.2:p.Trp118Arg
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.-39T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.-39T>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*51T>C
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp118Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-43427772-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427772
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427772
    reference: chr 15
allele count: 4
allele frequency: 3.311916274756574e-5
allele num: 120776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*54C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.-36C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.-36C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*54C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*54C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*54C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.-36C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.150C>A
  hgvsp: ENSP00000458098.1:p.Gln51Lys
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.355C>A
  hgvsp: ENSP00000260403.2:p.Gln119Lys
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4432G>T
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.316C>A
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37294
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln119Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-43427781-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427781
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427781
    reference: chr 15
allele count: 13
allele frequency: 1.076711557256208e-4
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.-27C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.-27C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.-27C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*63C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4441G>T
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*63C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.364C>A
  hgvsp: ENSP00000260403.2:p.Gln122Lys
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.325C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*63C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.159C>A
  hgvsp: ENSP00000458098.1:p.Gln54Lys
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*63C>A
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln122Lys
num of homozygotes: 1
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

15-43427795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427795
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427795
    reference: chr 15
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.173G>A
  hgvsp: ENST00000564494.1:c.173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.339G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4455C>T
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.378G>A
  hgvsp: ENST00000260403.2:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys126Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

15-43427803-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427803
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427803
    reference: chr 15
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.-5G>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.347G>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*85G>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.-5G>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.-5G>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.181G>C
  hgvsp: ENSP00000458098.1:p.Arg61Thr
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*85G>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4463C>G
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*85G>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.386G>C
  hgvsp: ENSP00000260403.2:p.Arg129Thr
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*85G>C
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg129Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

15-43427811-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427811
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427810
    reference: chr 15
allele count: 1
allele frequency: 8.326117364950376e-6
allele num: 120104
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.400delA
  hgvsp: ENSP00000260403.2:p.Thr134ProfsTer53
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.195delA
  hgvsp: ENSP00000458098.1:p.Thr66ProfsTer53
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*99delA
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.10delA
  hgvsp: ENSP00000457314.1:p.Thr4ProfsTer?
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*99delA
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*99delA
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.10delA
  hgvsp: ENSP00000455482.1:p.Thr4ProfsTer53
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4472delT
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.10delA
  hgvsp: ENSP00000454683.1:p.Thr4ProfsTer17
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*99delA
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.361delA
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr134ProfsTer53
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: GA
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/15-43427813-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427813
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427813
    reference: chr 15
allele count: 1
allele frequency: 8.333333333333334e-6
allele num: 120000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.6A>C
  hgvsp: ENSP00000454683.1:p.Glu2Asp
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.6A>C
  hgvsp: ENSP00000457314.1:p.Glu2Asp
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.6A>C
  hgvsp: ENSP00000455482.1:p.Glu2Asp
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.357A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*95A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*95A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*95A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.396A>C
  hgvsp: ENSP00000260403.2:p.Glu132Asp
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*95A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.191A>C
  hgvsp: ENSP00000458098.1:p.Glu64Asp
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4473T>G
  variant of: http://identifiers.org/hgnc/3381
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu132Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-43427818-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427818
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427818
    reference: chr 15
allele count: 1
allele frequency: 8.360365180751095e-6
allele num: 119612
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.401C>A
  hgvsp: ENSP00000260403.2:p.Thr134Asn
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.362C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.11C>A
  hgvsp: ENSP00000457314.1:p.Thr4Asn
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*100C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.11C>A
  hgvsp: ENSP00000454683.1:p.Thr4Asn
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*100C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*100C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.11C>A
  hgvsp: ENSP00000455482.1:p.Thr4Asn
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.196C>A
  hgvsp: ENSP00000458098.1:p.Thr66Asn
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*100C>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4478G>T
  variant of: http://identifiers.org/hgnc/3381
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr134Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

15-43427819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427819
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427819
    reference: chr 15
allele count: 1
allele frequency: 8.366100560528738e-6
allele num: 119530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.12C>T
  hgvsp: ENST00000565291.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.197C>T
  hgvsp: ENST00000564494.1:c.197C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*101C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*101C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.12C>T
  hgvsp: ENST00000564698.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*101C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4479G>A
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.12C>T
  hgvsp: ENST00000569535.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.363C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.402C>T
  hgvsp: ENST00000260403.2:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*101C>T
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr134Thr
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

15-43427836-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427836
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427836
    reference: chr 15
allele count: 1
allele frequency: 8.460523198754612e-6
allele num: 118196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.29A>G
  hgvsp: ENSP00000457314.1:p.Lys10Arg
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.29A>G
  hgvsp: ENSP00000455482.1:p.Lys10Arg
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4496T>C
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*118A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*118A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.419A>G
  hgvsp: ENSP00000260403.2:p.Lys140Arg
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.214A>G
  hgvsp: ENSP00000458098.1:p.Lys72Arg
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.29A>G
  hgvsp: ENSP00000454683.1:p.Lys10Arg
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.380A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*118A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*118A>G
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys140Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

15-43427842-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427842
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427842
    reference: chr 15
allele count: 1
allele frequency: 8.501810885718658e-6
allele num: 117622
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.35A>G
  hgvsp: ENSP00000455482.1:p.Asn12Ser
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*124A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.35A>G
  hgvsp: ENSP00000454683.1:p.Asn12Ser
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.35A>G
  hgvsp: ENSP00000457314.1:p.Asn12Ser
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.386A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.220A>G
  hgvsp: ENSP00000458098.1:p.Asn74Ser
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.425A>G
  hgvsp: ENSP00000260403.2:p.Asn142Ser
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*124A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*124A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4502T>C
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*124A>G
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn142Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

15-43427854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427854
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427854
    reference: chr 15
allele count: 1
allele frequency: 8.604371020478403e-6
allele num: 116220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+7G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+7G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.398G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+7G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4514C>T
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+7G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+7G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+7G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+7G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+7G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+7G>A
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.430+7G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

15-43427854-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427854
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427854
    reference: chr 15
allele count: 1
allele frequency: 8.604371020478403e-6
allele num: 116220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+7G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+7G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+7G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+7G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+7G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+7G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+7G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+7G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4514C>A
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+7G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.398G>T
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.430+7G>T
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

15-43427855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427855
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427855
    reference: chr 15
allele count: 3
allele frequency: 2.585538222873395e-5
allele num: 116030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+8C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+8C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.399C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+8C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+8C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+8C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+8C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+8C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+8C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+8C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4515G>A
  variant of: http://identifiers.org/hgnc/3381
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.430+8C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

15-43427866-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427866
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427866
    reference: chr 15
allele count: 1
allele frequency: 8.710042679209128e-6
allele num: 114810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+19A>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+19A>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+19A>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4526T>A
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+19A>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+19A>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+19A>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+19A>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.410A>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+19A>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+19A>T
  variant of: http://identifiers.org/hgnc/26269
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-43427870-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427870
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427870
    reference: chr 15
allele count: 1
allele frequency: 8.7631666579035e-6
allele num: 114114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+23A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+23A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4530T>G
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+23A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+23A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+23A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.414A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+23A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+23A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+23A>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+23A>C
  variant of: http://identifiers.org/hgnc/26269
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

15-43427880-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427880
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427880
    reference: chr 15
allele count: 1
allele frequency: 8.856454584100893e-6
allele num: 112912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+33A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+33A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+33A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4540T>C
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+33A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+33A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.424A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+33A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+33A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+33A>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+33A>G
  variant of: http://identifiers.org/hgnc/26269
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-43427881-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427881
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427881
    reference: chr 15
allele count: 1
allele frequency: 8.872799545712663e-6
allele num: 112704
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+34G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+34G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+34G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+34G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+34G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.425G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+34G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4541C>A
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+34G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+34G>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+34G>T
  variant of: http://identifiers.org/hgnc/26269
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

15-43427883-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427883
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427882
    reference: chr 15
allele count: 30
allele frequency: 2.677376171352075e-4
allele num: 112050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+43delT
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+43delT
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+43delT
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.434delT
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+43delT
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+43delT
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4544delA
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+43delT
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+43delT
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+43delT
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+43delT
  variant of: http://identifiers.org/hgnc/26269
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25651
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10769
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: GT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

15-43427884-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427884
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427884
    reference: chr 15
allele count: 1
allele frequency: 8.938307799567386e-6
allele num: 111878
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+37T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+37T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.428T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4544A>C
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+37T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+37T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+37T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+37T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+37T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+37T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+37T>G
  variant of: http://identifiers.org/hgnc/26269
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

15-43427887-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427887
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427887
    reference: chr 15
allele count: 1
allele frequency: 8.975210468685491e-6
allele num: 111418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+40T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+40T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4547A>C
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.431T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+40T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+40T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+40T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+40T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+40T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+40T>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+40T>G
  variant of: http://identifiers.org/hgnc/26269
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

15-43427891-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427891
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427891
    reference: chr 15
allele count: 1
allele frequency: 9.050592813829306e-6
allele num: 110490
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+44C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+44C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+44C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+44C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+44C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4551G>A
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+44C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+44C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+44C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+44C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.435C>T
  variant of: http://identifiers.org/hgnc/26269
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-43427895-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43427895
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43427895
    reference: chr 15
allele count: 2
allele frequency: 1.836344939033348e-5
allele num: 108912
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.430+48C>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+48C>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*129+48C>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.225+48C>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.40+48C>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+48C>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137842
  ensembl transcript: ENST00000570109
  gene symbol: TMEM62
  hgvsc: ENST00000570109.1:n.439C>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-4555G>C
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.40+48C>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+48C>G
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+48C>G
  variant of: http://identifiers.org/hgnc/26269
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

15-43430723-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43430723
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43430723
    reference: chr 15
allele count: 1
allele frequency: 8.746763697431951e-6
allele num: 114328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+2876C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.431-49C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-7383G>A
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.41-49C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+2876C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+2876C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.226-49C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.41-49C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*130-49C>T
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+2876C>T
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

15-43430736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43430736
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43430736
    reference: chr 15
allele count: 1
allele frequency: 8.619797951936006e-6
allele num: 116012
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.431-36G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+2889G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+2889G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*130-36G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.41-36G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-7396C>T
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.41-36G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+2889G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.226-36G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+2889G>A
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8748
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

15-43430737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43430737
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43430737
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 116174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000458098
  ensembl transcript: ENST00000564494
  gene symbol: TMEM62
  hgvsc: ENST00000564494.1:c.226-35G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*130-35G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457503
  ensembl transcript: ENST00000567441
  gene symbol: TMEM62
  hgvsc: ENST00000567441.1:c.*129+2890G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-7397C>T
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+2890G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000260403
  ensembl transcript: ENST00000260403
  gene symbol: TMEM62
  hgvsc: ENST00000260403.2:c.431-35G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+2890G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456003
  ensembl transcript: ENST00000568182
  gene symbol: TMEM62
  hgvsc: ENST00000568182.1:c.*129+2890G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000457314
  ensembl transcript: ENST00000565291
  gene symbol: TMEM62
  hgvsc: ENST00000565291.1:c.41-35G>A
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.41-35G>A
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

15-43430744-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43430744
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43430744
    reference: chr 15
allele count: 1
allele frequency: 8.564576909900651e-6
allele num: 116760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166947
  ensembl transcript: ENST00000570199
  gene symbol: EPB42
  hgvsc: ENST00000570199.1:n.95-7404C>G
  variant of: http://identifiers.org/hgnc/3381
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455413
  ensembl transcript: ENST00000569926
  gene symbol: TMEM62
  hgvsc: ENST00000569926.1:c.*129+2897G>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000455482
  ensembl transcript: ENST00000564698
  gene symbol: TMEM62
  hgvsc: ENST00000564698.1:c.41-28G>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000456151
  ensembl transcript: ENST00000568197
  gene symbol: TMEM62
  hgvsc: ENST00000568197.1:c.*130-28G>C
  variant of: http://identifiers.org/hgnc/26269
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137842
  ensembl protein: ENSP00000454683
  ensembl transcript: ENST00000569535
  gene symbol: TMEM62
  hgvsc: ENST00000569535.1:c.40+2897G>C
  variant of: http://identifiers.org/hgnc/26269
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 931
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 9.66e0

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.153e0

MQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

FS
type: SiteQuality
SIO_000300: 1.758e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.11e-1

DP
type: SiteQuality
SIO_000300: 1.754823e6

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.286e0

QD
type: SiteQuality
SIO_000300: 1.43e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.754556e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.822e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-1

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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Other
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South Asian
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MQ
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FS
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.498756032493031e-5
allele num: 66722
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African
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South Asian
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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FS
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MQ
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
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Other
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South Asian
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allele frequency: 6.056935190793458e-5
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European (Non-Finnish)
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allele frequency: 4.496537665997182e-5
allele num: 66718
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East Asian
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MQ
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ReadPosRankSum
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FS
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QD
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.69e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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ClippingRankSum
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InbreedingCoeff
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QD
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.75401e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele frequency: 2.311604253351826e-4
allele num: 8652
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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ReadPosRankSum
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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BaseQRankSum
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DP
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SIO_000300: 1.754175e6

MQ
type: SiteQuality
SIO_000300: 5.752e1

VQSLOD
type: SiteQuality
SIO_000300: -9.618e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.918e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 1.753623e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.76e0

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
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num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.72e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.55e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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FS
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VQSLOD
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

African
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allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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East Asian
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allele frequency: 4.624277456647399e-4
allele num: 8650
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.92e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498980693128672e-5
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num of homozygotes: 0

European (Finnish)
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Latino
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African
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South Asian
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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DP
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MQ
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QD
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele frequency: 4.49734656552634e-5
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South Asian
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MQ
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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DP
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Latino
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South Asian
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Other
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VQSLOD
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ReadPosRankSum
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MQ
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QD
type: SiteQuality
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InbreedingCoeff
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DP
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BaseQRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66706
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East Asian
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Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
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European (Finnish)
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African
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South Asian
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Other
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QD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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SIO_000300: 9.389999999999999e-1

MQ
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DP
type: SiteQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499115521842113e-5
allele num: 66706
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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FS
type: SiteQuality
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VQSLOD
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 5.76923076923077e-4
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
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QD
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DP
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VQSLOD
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.999220202747286e-5
allele num: 66684
num of homozygotes: 0

Latino
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num of homozygotes: 0

QD
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BaseQRankSum
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
type: SiteQuality
SIO_000300: 5.907e1

VQSLOD
type: SiteQuality
SIO_000300: -3.981e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 2.314279102059708e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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South Asian
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

ClippingRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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DP
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QD
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FS
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.500330072615976e-5
allele num: 66652
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South Asian
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num of homozygotes: 0

FS
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
SIO_000300: 1.747559e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500690317546071e-5
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num of homozygotes: 0

VQSLOD
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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QD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
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Latino
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allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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QD
type: SiteQuality
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BaseQRankSum
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MQ
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MQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Latino
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East Asian
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allele frequency: 1.157407407407407e-4
allele num: 8640
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FS
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Latino
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Other
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African
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South Asian
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allele frequency: 2.423654871546292e-4
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East Asian
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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FS
type: SiteQuality
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DP
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.002912825440678e-5
allele num: 66602
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African
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East Asian
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Other
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South Asian
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Latino
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

African
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Latino
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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MQ
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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QD
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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African
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Latino
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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allele frequency: 6.062075654704171e-5
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European (Finnish)
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MQRankSum
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FS
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ReadPosRankSum
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QD
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MQ
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
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European (Finnish)
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Other
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Latino
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South Asian
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African
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European (Non-Finnish)
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allele frequency: 1.502268425322237e-5
allele num: 66566
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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FS
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VQSLOD
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DP
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MQ
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GenotypeQuality
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variant carriers: 0

African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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South Asian
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Other
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ClippingRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

East Asian
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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FS
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InbreedingCoeff
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DP
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MQ
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11518
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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African
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East Asian
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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MQRankSum
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FS
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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African
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European (Finnish)
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Latino
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Other
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East Asian
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South Asian
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European (Non-Finnish)
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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BaseQRankSum
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MQ
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FS
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QD
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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African
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East Asian
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Other
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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BaseQRankSum
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QD
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FS
type: SiteQuality
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MQ
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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allele num: 6598
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Other
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Latino
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South Asian
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DP
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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South Asian
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Latino
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Other
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele num: 66400
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European (Finnish)
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South Asian
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Latino
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African
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East Asian
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Other
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QD
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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South Asian
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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Other
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African
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East Asian
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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QD
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FS
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MQ
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ReadPosRankSum
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Other
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Latino
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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MQ
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ReadPosRankSum
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QD
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VQSLOD
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DP
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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Latino
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European (Finnish)
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East Asian
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South Asian
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ReadPosRankSum
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BaseQRankSum
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FS
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66286
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 1.057e0

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

DP
type: SiteQuality
SIO_000300: 1.552724e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

QD
type: SiteQuality
SIO_000300: 1.579e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

South Asian
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allele frequency: 6.119951040391677e-5
allele num: 16340
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.555502e6

MQRankSum
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SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.091e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.712e1

VQSLOD
type: SiteQuality
SIO_000300: -1.548e0

QD
type: SiteQuality
SIO_000300: 8.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507522537461935e-5
allele num: 66334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

DP
type: SiteQuality
SIO_000300: 1.555947e6

FS
type: SiteQuality
SIO_000300: 5.287e0

VQSLOD
type: SiteQuality
SIO_000300: 8.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.398e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 30

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.525506468147425e-3
allele num: 16388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.53465943339361e-5
allele num: 66360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.152e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.443e0

DP
type: SiteQuality
SIO_000300: 1.55852e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

GenotypeQuality
all individuals: 101
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.232e0

FS
type: SiteQuality
SIO_000300: 4.395e0

DP
type: SiteQuality
SIO_000300: 1.55934e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1988
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variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.436647173489279e-4
allele num: 16416
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1403e1

QD
type: SiteQuality
SIO_000300: 1.142e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 1.559967e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.087e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.117e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.508820798514392e-3
allele num: 8616
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.47e-2

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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DP
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VQSLOD
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.114e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -1.544e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 121
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.301e0

ClippingRankSum
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SIO_000300: -1.135e0

DP
type: SiteQuality
SIO_000300: 1.558682e6

FS
type: SiteQuality
SIO_000300: 1.503e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: -1.398e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 7.31e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.155361319709468e-5
allele num: 16246
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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InbreedingCoeff
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SIO_000300: 1.0e-4

FS
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MQRankSum
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SIO_000300: 1.23e-1

ReadPosRankSum
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SIO_000300: 3.11e0

QD
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ClippingRankSum
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SIO_000300: 6.59e-1

BaseQRankSum
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SIO_000300: -2.844e0

DP
type: SiteQuality
SIO_000300: 1.557139e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.718172983479106e-5
allele num: 10290
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -2.0e-4

FS
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.026e1

VQSLOD
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MQRankSum
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BaseQRankSum
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SIO_000300: 2.07e-1

ClippingRankSum
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SIO_000300: -1.73e-1

ReadPosRankSum
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SIO_000300: -2.121e0

MQ
type: SiteQuality
SIO_000300: 5.998e1

DP
type: SiteQuality
SIO_000300: 1.553759e6

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.512950859356088e-5
allele num: 66096
num of homozygotes: 0

ClippingRankSum
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SIO_000300: -7.7e-2

MQRankSum
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InbreedingCoeff
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FS
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MQ
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SIO_000300: 5.95e1

DP
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BaseQRankSum
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SIO_000300: 1.09e0

VQSLOD
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SIO_000300: -4.415e-1

QD
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SIO_000300: 1.588e1

ReadPosRankSum
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SIO_000300: 4.14e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15780
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65962
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.733307377846993e-5
allele num: 10274
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -4.92e-1

VQSLOD
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ClippingRankSum
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QD
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MQ
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FS
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SIO_000300: 1.961e0

DP
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InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.516300227445034e-5
allele num: 65950
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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QD
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DP
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.526018617427133e-5
allele num: 65530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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Other
type: Population
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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DP
type: SiteQuality
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MQ
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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Latino
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African
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East Asian
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South Asian
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European (Non-Finnish)
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QD
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MQRankSum
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MQ
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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African
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ReadPosRankSum
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MQ
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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Other
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European (Non-Finnish)
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Latino
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East Asian
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FS
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DP
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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MQ
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QD
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DP
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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South Asian
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FS
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QD
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DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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East Asian
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ClippingRankSum
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MQRankSum
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QD
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DP
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FS
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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QD
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 1.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.994955863808323e-4
allele num: 63440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.06669377795852e-4
allele num: 9836
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.156552330694811e-4
allele num: 11370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.005e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 3.503e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.396987e6

GenotypeQuality
all individuals: 528
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2786
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6053
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2098
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28522
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.802816901408451e-5
allele num: 11360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.393305e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

QD
type: SiteQuality
SIO_000300: 1.586e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2860
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
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variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5665
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26111
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3252
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578631642092634e-5
allele num: 63346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.021e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.893e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQRankSum
type: SiteQuality
SIO_000300: -1.263e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.361e0

QD
type: SiteQuality
SIO_000300: 1.303e1

DP
type: SiteQuality
SIO_000300: 1.37755e6

GenotypeQuality
all individuals: 975
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3481
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3163
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5200
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4906
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3475
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58856235107228e-5
allele num: 62950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

FS
type: SiteQuality
SIO_000300: 4.121e0

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

QD
type: SiteQuality
SIO_000300: 1.018e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.979e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

DP
type: SiteQuality
SIO_000300: 1.369966e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 2186
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4422
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4251
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1827
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3866
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18192
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.911680367042631e-4
allele num: 10462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.211e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

DP
type: SiteQuality
SIO_000300: 1.37223e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

QD
type: SiteQuality
SIO_000300: 1.361e1

MQRankSum
type: SiteQuality
SIO_000300: 2.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

GenotypeQuality
all individuals: 421
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2386
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5558
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variant carriers: 0

GenotypeQuality
all individuals: 3603
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variant carriers: 0

GenotypeQuality
all individuals: 1944
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variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3997
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
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variant carriers: 0

GenotypeQuality
all individuals: 1582
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2962
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10671
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3304
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.265502404454569e-4
allele num: 7902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.949e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.25e-1

DP
type: SiteQuality
SIO_000300: 1.659362e6

FS
type: SiteQuality
SIO_000300: 2.427e0

MQ
type: SiteQuality
SIO_000300: 5.825e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.46e-1

GenotypeQuality
all individuals: 2023
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2391
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variant carriers: 0

GenotypeQuality
all individuals: 2269
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variant carriers: 0

GenotypeQuality
all individuals: 523
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variant carriers: 0

GenotypeQuality
all individuals: 2497
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3576
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variant carriers: 0

GenotypeQuality
all individuals: 884
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variant carriers: 0

GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 4369
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variant carriers: 0

GenotypeQuality
all individuals: 14999
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6342
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
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GenotypeQuality
all individuals: 10735
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1662
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576292559899117e-5
allele num: 63440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.029e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.834e0

QD
type: SiteQuality
SIO_000300: 2.147e1

DP
type: SiteQuality
SIO_000300: 1.723481e6

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 2525
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 768
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variant carriers: 0

GenotypeQuality
all individuals: 15489
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GenotypeQuality
all individuals: 168
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variant carriers: 0

GenotypeQuality
all individuals: 10744
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variant carriers: 0

GenotypeQuality
all individuals: 3597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1672
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4424
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

QD
type: SiteQuality
SIO_000300: 2.582e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.677e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.167e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

DP
type: SiteQuality
SIO_000300: 1.730396e6