13-51953712-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51953712
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51953712
    reference: chr 13
allele count: 3
allele frequency: 2.5067263824596e-5
allele num: 119678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-21-4A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1237-4A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1332-4A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.742-4A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.328-4A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.433-4A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1276-4A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.861-5339A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1104-4A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.509-4A>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10024
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3113
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1276-4A>G
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

13-51953724-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51953724
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51953724
    reference: chr 13
allele count: 1
allele frequency: 8.41283462049703e-6
allele num: 118866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1332-16T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1237-16T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.328-16T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1276-16T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.861-5351T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-21-16T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.509-16T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1104-16T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.742-16T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.433-16T>C
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7280
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

13-51953737-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51953737
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51953737
    reference: chr 13
allele count: 1
allele frequency: 8.530676312018017e-6
allele num: 117224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.433-29A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1276-29A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.509-29A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.861-5364A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1332-29A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1104-29A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.742-29A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1237-29A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.328-29A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-21-29A>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14532
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6236
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

13-51953743-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51953743
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51953743
    reference: chr 13
allele count: 1
allele frequency: 8.542189875796559e-6
allele num: 117066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.509-35C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.328-35C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1104-35C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1332-35C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.433-35C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.861-5370C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1237-35C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.742-35C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1276-35C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-21-35C>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

13-51953745-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51953745
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51953745
    reference: chr 13
allele count: 1
allele frequency: 8.55549091406865e-6
allele num: 116884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1104-37A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1237-37A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.328-37A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.861-5372A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1276-37A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.433-37A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.509-37A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.742-37A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1332-37A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-21-37A>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

13-51953749-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51953749
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51953748
    reference: chr 13
allele count: 2
allele frequency: 1.719927075092016e-5
allele num: 116284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.509-42delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.861-5377delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1276-42delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.328-42delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1104-42delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.742-42delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-21-42delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1332-42delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.433-42delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1237-42delT
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: TA
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

13-51953756-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51953756
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51953756
    reference: chr 13
allele count: 45
allele frequency: 3.892396851483436e-4
allele num: 115610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.328-48A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.861-5383A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-21-48A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1104-48A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.433-48A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1332-48A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.742-48A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.509-48A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1237-48A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1276-48A>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11583
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11285
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

13-51953759-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51953759
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51953759
    reference: chr 13
allele count: 352
allele frequency: 3.063693491392066e-3
allele num: 114894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1104-51A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.328-51A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1276-51A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.433-51A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-21-51A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1332-51A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.742-51A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.861-5386A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.509-51A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1237-51A>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 11470
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 11612
  bin: 2.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 3.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 7.25e1
  variant carriers: 3
num of homozygotes: 5
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

13-51956114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956114
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956114
    reference: chr 13
allele count: 2
allele frequency: 3.682156270712129e-5
allele num: 54316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+51C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+51C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+51C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+51C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+51C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+51C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1351C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+51C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+51C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5442C>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7239
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15870
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

13-51956114-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956114
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956114
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 54316
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+51C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+51C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+51C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5442C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1351C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+51C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+51C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+51C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+51C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+51C>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25377
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4299
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

13-51956116-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956116
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956116
    reference: chr 13
allele count: 1
allele frequency: 1.864071878611639e-5
allele num: 53646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5440G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+49G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+49G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+49G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+49G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1349G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+49G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+49G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+49G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+49G>A
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15880
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5068
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13653
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

13-51956117-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956117
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956117
    reference: chr 13
allele count: 2
allele frequency: 3.690717844620779e-5
allele num: 54190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+48C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+48C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+48C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1348C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+48C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+48C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+48C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5439C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+48C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+48C>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25242
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15415
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

13-51956117-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956117
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956117
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 54190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+48C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+48C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+48C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+48C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+48C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5439C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+48C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+48C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1348C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+48C>A
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum

13-51956119-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956119
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956119
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 55162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+46C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1346C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+46C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5437C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+46C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+46C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+46C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+46C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+46C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+46C>A
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16092
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5143
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

13-51956122-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956122
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956122
    reference: chr 13
allele count: 45106
allele frequency: 6.969837443599728e-1
allele num: 64716
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+43A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+43A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+43A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+43A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5434A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+43A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+43A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+43A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+43A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1343A>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 399
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 2.75e1
  variant carriers: 1330
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 2.5e0
  variant carriers: 2052
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.25e1
  variant carriers: 833
genotype depth: GenotypeDepth
  all individuals: 7500
  bin: 1.75e1
  variant carriers: 6933
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 22011
  bin: 7.5e0
  variant carriers: 16631
genotype depth: GenotypeDepth
  all individuals: 18285
  bin: 1.25e1
  variant carriers: 16130
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 2.25e1
  variant carriers: 2730
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 580
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 277
genotype quality: GenotypeQuality
  all individuals: 4659
  bin: 3.25e1
  variant carriers: 3965
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 5.25e1
  variant carriers: 1897
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 7.25e1
  variant carriers: 562
num of homozygotes: 15619
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/13-51956128-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956128
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956128
    reference: chr 13
allele count: 2
allele frequency: 3.037851631326326e-5
allele num: 65836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+37G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+37G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5428G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+37G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+37G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+37G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+37G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+37G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+37G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1337G>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17958
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3415
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

13-51956128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956128
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956128
    reference: chr 13
allele count: 1
allele frequency: 1.518925815663163e-5
allele num: 65836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5428G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+37G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+37G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+37G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+37G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+37G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+37G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+37G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+37G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1337G>A
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17958
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21859
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7703
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

13-51956129-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956129
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956129
    reference: chr 13
allele count: 2
allele frequency: 2.999220202747286e-5
allele num: 66684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+36C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+36C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1336C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+36C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+36C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+36C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5427C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+36C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+36C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+36C>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17927
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21867
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7718
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

13-51956132-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956132
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956132
    reference: chr 13
allele count: 1
allele frequency: 1.491646778042959e-5
allele num: 67040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+33G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+33G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5424G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1333G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+33G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+33G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+33G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+33G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+33G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+33G>A
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3267
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

13-51956133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956133
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956133
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 67896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5423C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+32C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+32C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1332C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+32C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+32C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+32C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+32C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+32C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+32C>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22013
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

13-51956139-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956139
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956139
    reference: chr 13
allele count: 1
allele frequency: 1.41993013943714e-5
allele num: 70426
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+26G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+26G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+26G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1326G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+26G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+26G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+26G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5417G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+26G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+26G>C
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11721
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15059
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6662
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS

13-51956142-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956142
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956142
    reference: chr 13
allele count: 1
allele frequency: 1.392951664577239e-5
allele num: 71790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5414C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+23C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+23C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+23C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+23C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1323C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+23C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+23C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+23C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+23C>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

13-51956142-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956142
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956142
    reference: chr 13
allele count: 1
allele frequency: 1.392951664577239e-5
allele num: 71790
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+23C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+23C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+23C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+23C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+23C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1323C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+23C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5414C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+23C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+23C>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14045
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21871
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

13-51956144-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956144
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956144
    reference: chr 13
allele count: 1
allele frequency: 1.369675386933297e-5
allele num: 73010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5412A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1321A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+21A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+21A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+21A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+21A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+21A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+21A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+21A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+21A>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

13-51956158-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956158
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956158
    reference: chr 13
allele count: 1
allele frequency: 1.237501237501238e-5
allele num: 80808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5398A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1236+7A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.508+7A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1103+7A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1307A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.741+7A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1275+7A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1331+7A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.327+7A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.432+7A>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1275+7A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

13-51956199-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956199
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956199
    reference: chr 13
allele count: 1
allele frequency: 9.848141655669575e-6
allele num: 101542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.670G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1266G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.474G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5357G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.293G>C
  hgvsp: ENSP00000419984.1:p.Ser98Thr
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.707G>C
  hgvsp: ENSP00000419871.1:p.Ser236Thr
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.398G>C
  hgvsp: ENSP00000418026.1:p.Ser133Thr
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1202G>C
  hgvsp: ENSP00000381187.2:p.Ser401Thr
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1241G>C
  hgvsp: ENSP00000310260.4:p.Ser414Thr
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1069G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1297G>C
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser414Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

13-51956207-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956207
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956207
    reference: chr 13
allele count: 1
allele frequency: 9.845232938211319e-6
allele num: 101572
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5349A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1194A>G
  hgvsp: ENST00000398119.2:c.1194A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1289A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.466A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1258A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.285A>G
  hgvsp: ENST00000490542.1:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.662A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.699A>G
  hgvsp: ENST00000497989.1:c.699A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1233A>G
  hgvsp: ENST00000311234.4:c.1233A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.390A>G
  hgvsp: ENST00000483746.1:c.390A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1061A>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser411Ser
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

13-51956225-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956225
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956225
    reference: chr 13
allele count: 1
allele frequency: 9.986219017755498e-6
allele num: 100138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.644A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5331A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1271A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.372A>T
  hgvsp: ENST00000483746.1:c.372A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1240A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1215A>T
  hgvsp: ENST00000311234.4:c.1215A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1043A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1176A>T
  hgvsp: ENST00000398119.2:c.1176A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.267A>T
  hgvsp: ENST00000490542.1:c.267A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.448A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.681A>T
  hgvsp: ENST00000497989.1:c.681A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30987
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr405Thr
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

13-51956225-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956225
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956225
    reference: chr 13
allele count: 2155
allele frequency: 2.15203019832631e-2
allele num: 100138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1176A>C
  hgvsp: ENST00000398119.2:c.1176A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.681A>C
  hgvsp: ENST00000497989.1:c.681A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.267A>C
  hgvsp: ENST00000490542.1:c.267A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1215A>C
  hgvsp: ENST00000311234.4:c.1215A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.644A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.448A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.372A>C
  hgvsp: ENST00000483746.1:c.372A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5331A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1240A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1043A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1271A>C
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 2.75e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 1.75e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 1.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 30987
  bin: 2.25e1
  variant carriers: 367
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10214
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
hgvs: p.Thr405Thr
num of homozygotes: 41
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

13-51956267-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956267
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956267
    reference: chr 13
allele count: 3
allele frequency: 3.401052058770179e-5
allele num: 88208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.338-8G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1181-8G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.414-8G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5289G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1142-8G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1198G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.233-8G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.647-8G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.610-8G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1009-8G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1237-8G>A
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17005
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1181-8G>A
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

13-51956268-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956268
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956268
    reference: chr 13
allele count: 5
allele frequency: 5.697616117416473e-5
allele num: 87756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1009-9C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.338-9C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1197C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1237-9C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.233-9C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1142-9C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5288C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.610-9C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.647-9C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.414-9C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1181-9C>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/13-51956284-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956284
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956284
    reference: chr 13
allele count: 1
allele frequency: 1.210653753026634e-5
allele num: 82600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5272G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.338-25G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1181G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1237-25G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.414-25G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.233-25G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.647-25G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1009-25G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.610-25G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1142-25G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1181-25G>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9450
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3354
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

13-51956296-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956296
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956296
    reference: chr 13
allele count: 1
allele frequency: 1.276193879374155e-5
allele num: 78358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.647-37T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1169T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.610-37T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1237-37T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1142-37T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.414-37T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.338-37T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5260T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.233-37T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1009-37T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1181-37T>C
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21071
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

13-51956309-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956309
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956309
    reference: chr 13
allele count: 10
allele frequency: 1.38792505204719e-4
allele num: 72050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.647-50T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5247T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1142-50T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1181-50T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1237-50T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1156T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.610-50T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.338-50T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.233-50T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.414-50T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1009-50T>C
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16840
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19351
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8634
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7382
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

13-51956310-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51956310
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51956310
    reference: chr 13
allele count: 1
allele frequency: 1.389313401317069e-5
allele num: 71978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1142-51A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1181-51A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1237-51A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1009-51A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.233-51A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.647-51A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.610-51A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.414-51A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+1155A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+5246A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.338-51A>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8623
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/13-51957414-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957414
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957414
    reference: chr 13
allele count: 1
allele frequency: 8.494877588813945e-6
allele num: 117718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+51T>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.413+51T>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.609+51T>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1141+51T>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4142T>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.232+51T>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1236+51T>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1008+51T>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1180+51T>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.337+51T>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.646+51T>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum

13-51957415-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957415
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957415
    reference: chr 13
allele count: 1
allele frequency: 8.495021917156547e-6
allele num: 117716
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.413+50C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.232+50C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+50C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.646+50C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1180+50C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1236+50C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4141C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.609+50C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1008+50C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.337+50C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1141+50C>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38942
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

13-51957429-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957429
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957429
    reference: chr 13
allele count: 1
allele frequency: 8.477306251165629e-6
allele num: 117962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4127A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1180+36A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.609+36A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1008+36A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1236+36A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.646+36A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.337+36A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.232+36A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+36A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1141+36A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.413+36A>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

13-51957429-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957429
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957429
    reference: chr 13
allele count: 2
allele frequency: 1.695461250233126e-5
allele num: 117962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1008+36A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.413+36A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1180+36A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.232+36A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1141+36A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4127A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.646+36A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.337+36A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+36A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1236+36A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.609+36A>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

13-51957451-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957451
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957451
    reference: chr 13
allele count: 2
allele frequency: 1.682935038707506e-5
allele num: 118840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22+14G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1236+14G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.646+14G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.337+14G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.232+14G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.413+14G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1180+14G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4105G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1141+14G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.609+14G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1008+14G>A
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

13-51957465-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957465
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957465
    reference: chr 13
allele count: 3
allele frequency: 2.502377258395476e-5
allele num: 119886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4091G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.337G>C
  hgvsp: ENSP00000418026.1:p.Asp113His
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1180G>C
  hgvsp: ENSP00000310260.4:p.Asp394His
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.232G>C
  hgvsp: ENSP00000419984.1:p.Asp78His
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1141G>C
  hgvsp: ENSP00000381187.2:p.Asp381His
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-22G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.609G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.413G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.646G>C
  hgvsp: ENSP00000419871.1:p.Asp216His
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1236G>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1008G>C
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp394His
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

13-51957472-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957472
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957472
    reference: chr 13
allele count: 1
allele frequency: 8.305785810395521e-6
allele num: 120398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4084C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.406C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.225C>T
  hgvsp: ENST00000490542.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1134C>T
  hgvsp: ENST00000398119.2:c.1134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.330C>T
  hgvsp: ENST00000483746.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.602C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.639C>T
  hgvsp: ENST00000497989.1:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1229C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1001C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1173C>T
  hgvsp: ENST00000311234.4:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro391Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

13-51957472-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957472
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957472
    reference: chr 13
allele count: 1
allele frequency: 8.305785810395521e-6
allele num: 120398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.602C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.330C>G
  hgvsp: ENST00000483746.1:c.330C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1134C>G
  hgvsp: ENST00000398119.2:c.1134C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.225C>G
  hgvsp: ENST00000490542.1:c.225C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1173C>G
  hgvsp: ENST00000311234.4:c.1173C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.406C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.639C>G
  hgvsp: ENST00000497989.1:c.639C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4084C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*1001C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-29C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1229C>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro391Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

13-51957478-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957478
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957478
    reference: chr 13
allele count: 1
allele frequency: 8.286926544683108e-6
allele num: 120672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1223T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1128T>C
  hgvsp: ENST00000398119.2:c.1128T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.596T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1167T>C
  hgvsp: ENST00000311234.4:c.1167T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.324T>C
  hgvsp: ENST00000483746.1:c.324T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.633T>C
  hgvsp: ENST00000497989.1:c.633T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*995T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-35T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.219T>C
  hgvsp: ENST00000490542.1:c.219T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4078T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.400T>C
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu389Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ

13-51957481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957481
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957481
    reference: chr 13
allele count: 2
allele frequency: 1.655848456749238e-5
allele num: 120784
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.321C>T
  hgvsp: ENST00000483746.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.216C>T
  hgvsp: ENST00000490542.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.593C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.397C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.630C>T
  hgvsp: ENST00000497989.1:c.630C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*992C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1220C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1125C>T
  hgvsp: ENST00000398119.2:c.1125C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1164C>T
  hgvsp: ENST00000311234.4:c.1164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4075C>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val388Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

13-51957505-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957505
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957505
    reference: chr 13
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1196T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1140T>C
  hgvsp: ENST00000311234.4:c.1140T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.373T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1101T>C
  hgvsp: ENST00000398119.2:c.1101T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-62T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.297T>C
  hgvsp: ENST00000483746.1:c.297T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.606T>C
  hgvsp: ENST00000497989.1:c.606T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*968T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4051T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.192T>C
  hgvsp: ENST00000490542.1:c.192T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.569T>C
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe380Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

13-51957507-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957507
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957507
    reference: chr 13
allele count: 1
allele frequency: 8.249191579225235e-6
allele num: 121224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1099T>C
  hgvsp: ENSP00000381187.2:p.Phe367Leu
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.295T>C
  hgvsp: ENSP00000418026.1:p.Phe99Leu
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-64T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.604T>C
  hgvsp: ENSP00000419871.1:p.Phe202Leu
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4049T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*966T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.190T>C
  hgvsp: ENSP00000419984.1:p.Phe64Leu
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1138T>C
  hgvsp: ENSP00000310260.4:p.Phe380Leu
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1194T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.567T>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.371T>C
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe380Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

13-51957514-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957514
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957514
    reference: chr 13
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1092C>A
  hgvsp: ENST00000398119.2:c.1092C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1187C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.183C>A
  hgvsp: ENST00000490542.1:c.183C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4042C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.560C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.597C>A
  hgvsp: ENST00000497989.1:c.597C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-71C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1131C>A
  hgvsp: ENST00000311234.4:c.1131C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*959C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.364C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.288C>A
  hgvsp: ENST00000483746.1:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val377Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

13-51957526-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957526
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957526
    reference: chr 13
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1119A>T
  hgvsp: ENST00000311234.4:c.1119A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1080A>T
  hgvsp: ENST00000398119.2:c.1080A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1175A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+4030A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-83A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.352A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.548A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.171A>T
  hgvsp: ENST00000490542.1:c.171A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.585A>T
  hgvsp: ENST00000497989.1:c.585A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.276A>T
  hgvsp: ENST00000483746.1:c.276A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*947A>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala373Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

13-51957574-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957574
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957574
    reference: chr 13
allele count: 4
allele frequency: 3.300765777660417e-5
allele num: 121184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*899A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1032A>G
  hgvsp: ENST00000398119.2:c.1032A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1127A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3982A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.228A>G
  hgvsp: ENST00000483746.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.537A>G
  hgvsp: ENST00000497989.1:c.537A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.500A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.304A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-131A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.123A>G
  hgvsp: ENST00000490542.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1071A>G
  hgvsp: ENST00000311234.4:c.1071A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys357Lys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/13-51957579-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957579
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957579
    reference: chr 13
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.223G>T
  hgvsp: ENSP00000418026.1:p.Ala75Ser
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-136G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1027G>T
  hgvsp: ENSP00000381187.2:p.Ala343Ser
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1066G>T
  hgvsp: ENSP00000310260.4:p.Ala356Ser
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3977G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.532G>T
  hgvsp: ENSP00000419871.1:p.Ala178Ser
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.495G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*894G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1122G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.118G>T
  hgvsp: ENSP00000419984.1:p.Ala40Ser
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.299G>T
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala356Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

13-51957579-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957579
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957579
    reference: chr 13
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1122G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.532G>A
  hgvsp: ENSP00000419871.1:p.Ala178Thr
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1027G>A
  hgvsp: ENSP00000381187.2:p.Ala343Thr
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1066G>A
  hgvsp: ENSP00000310260.4:p.Ala356Thr
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.223G>A
  hgvsp: ENSP00000418026.1:p.Ala75Thr
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*894G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-136G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.118G>A
  hgvsp: ENSP00000419984.1:p.Ala40Thr
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.299G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.495G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3977G>A
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala356Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

13-51957587-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957587
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957587
    reference: chr 13
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*886G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.291G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.215G>A
  hgvsp: ENSP00000418026.1:p.Ser72Asn
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1058G>A
  hgvsp: ENSP00000310260.4:p.Ser353Asn
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.524G>A
  hgvsp: ENSP00000419871.1:p.Ser175Asn
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-144G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.110G>A
  hgvsp: ENSP00000419984.1:p.Ser37Asn
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1114G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.487G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3969G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1019G>A
  hgvsp: ENSP00000381187.2:p.Ser340Asn
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser353Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

13-51957592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957592
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957592
    reference: chr 13
allele count: 8
allele frequency: 6.612553933643021e-5
allele num: 120982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1014C>T
  hgvsp: ENST00000398119.2:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.482C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.210C>T
  hgvsp: ENST00000483746.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1053C>T
  hgvsp: ENST00000311234.4:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3964C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-149C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.519C>T
  hgvsp: ENST00000497989.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.286C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1109C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*881C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.105C>T
  hgvsp: ENST00000490542.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr351Tyr
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

13-51957595-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957595
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957595
    reference: chr 13
allele count: 1
allele frequency: 8.269520202437855e-6
allele num: 120926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.207G>A
  hgvsp: ENST00000483746.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1011G>A
  hgvsp: ENST00000398119.2:c.1011G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.479G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1050G>A
  hgvsp: ENST00000311234.4:c.1050G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.102G>A
  hgvsp: ENST00000490542.1:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.283G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1106G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.516G>A
  hgvsp: ENST00000497989.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*878G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-152G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3961G>A
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1050G>A
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

13-51957602-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957602
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957601
    reference: chr 13
allele count: 1
allele frequency: 8.279105194310599e-6
allele num: 120786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*876-6delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1048-6delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.100-6delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.205-6delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-154-6delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1009-6delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3953delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.275delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.477-6delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.514-6delT
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1104-6delT
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1048-6delT
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: TA
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

13-51957613-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957613
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957613
    reference: chr 13
allele count: 5
allele frequency: 4.144562334217506e-5
allele num: 120640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-154-16C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.514-16C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.477-16C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.100-16C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.205-16C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*876-16C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3943C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.265C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1104-16C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1009-16C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1048-16C>T
  variant of: http://identifiers.org/hgnc/14879
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

13-51957613-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957613
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957613
    reference: chr 13
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3943C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.265C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*876-16C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.205-16C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1048-16C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-154-16C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.477-16C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.514-16C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1009-16C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1104-16C>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.100-16C>G
  variant of: http://identifiers.org/hgnc/14879
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

13-51957613-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957613
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957613
    reference: chr 13
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.477-16C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*876-16C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3943C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1104-16C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.265C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1009-16C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1048-16C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.205-16C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-154-16C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.514-16C>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.100-16C>A
  variant of: http://identifiers.org/hgnc/14879
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

13-51957624-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957624
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957624
    reference: chr 13
allele count: 1
allele frequency: 8.304682179812978e-6
allele num: 120414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-154-27A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.514-27A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.254A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1048-27A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1009-27A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.205-27A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.477-27A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3932A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*876-27A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1104-27A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.100-27A>G
  variant of: http://identifiers.org/hgnc/14879
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

13-51957633-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957633
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957633
    reference: chr 13
allele count: 4
allele frequency: 3.327288758754929e-5
allele num: 120218
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1048-36A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.205-36A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.245A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*876-36A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1104-36A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.514-36A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3923A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1009-36A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.477-36A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-154-36A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.100-36A>C
  variant of: http://identifiers.org/hgnc/14879
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/13-51957646-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957646
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957646
    reference: chr 13
allele count: 1
allele frequency: 8.334444592612349e-6
allele num: 119984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-154-49G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.100-49G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.232G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1009-49G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1104-49G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*876-49G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.514-49G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3910G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1048-49G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.477-49G>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.205-49G>T
  variant of: http://identifiers.org/hgnc/14879
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

13-51957681-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957681
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957681
    reference: chr 13
allele count: 1
allele frequency: 8.351149118118652e-6
allele num: 119744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.476+44A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.204+44A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.513+44A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1103+44A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3875A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1047+44A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*875+44A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.197A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.99+44A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-155+44A>C
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1008+44A>C
  variant of: http://identifiers.org/hgnc/14879
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

13-51957682-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957682
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957682
    reference: chr 13
allele count: 12
allele frequency: 1.002255073916312e-4
allele num: 119730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.196C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3874C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1008+43C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*875+43C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.204+43C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-155+43C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.99+43C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1103+43C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.476+43C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.513+43C>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1047+43C>T
  variant of: http://identifiers.org/hgnc/14879
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11063
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11511
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

13-51957684-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957684
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957684
    reference: chr 13
allele count: 1
allele frequency: 8.35421888053467e-6
allele num: 119700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1103+41G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3872G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.476+41G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.204+41G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1047+41G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*875+41G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1008+41G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.99+41G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.194G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-155+41G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.513+41G>A
  variant of: http://identifiers.org/hgnc/14879
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

13-51957705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957705
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957705
    reference: chr 13
allele count: 1
allele frequency: 8.337919188887221e-6
allele num: 119934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1103+20G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1047+20G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*875+20G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.513+20G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.204+20G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.1008+20G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.173G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-155+20G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.99+20G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3851G>A
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.476+20G>A
  variant of: http://identifiers.org/hgnc/14879
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

13-51957734-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957734
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957734
    reference: chr 13
allele count: 11
allele frequency: 9.109730848861284e-5
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*866A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1038A>T
  hgvsp: ENST00000311234.4:c.1038A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.999A>T
  hgvsp: ENST00000398119.2:c.999A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.90A>T
  hgvsp: ENST00000490542.1:c.90A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-164A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.467A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.144A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.195A>T
  hgvsp: ENST00000483746.1:c.195A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1094A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3822A>T
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.504A>T
  hgvsp: ENST00000497989.1:c.504A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr346Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

13-51957734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51957734
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 51957734
    reference: chr 13
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000406915
  ensembl transcript: ENST00000425000
  gene symbol: INTS6
  hgvsc: ENST00000425000.1:c.-164A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419984
  ensembl transcript: ENST00000490542
  gene symbol: INTS6
  hgvsc: ENST00000490542.1:c.90A>G
  hgvsp: ENST00000490542.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000460868
  gene symbol: INTS6
  hgvsc: ENST00000460868.1:n.467A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000381187
  ensembl transcript: ENST00000398119
  gene symbol: INTS6
  hgvsc: ENST00000398119.2:c.999A>G
  hgvsp: ENST00000398119.2:c.999A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000483441
  gene symbol: INTS6
  hgvsc: ENST00000483441.1:n.1094A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000420431
  ensembl transcript: ENST00000463928
  gene symbol: INTS6
  hgvsc: ENST00000463928.1:c.860+3822A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000418026
  ensembl transcript: ENST00000483746
  gene symbol: INTS6
  hgvsc: ENST00000483746.1:c.195A>G
  hgvsp: ENST00000483746.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000310260
  ensembl transcript: ENST00000311234
  gene symbol: INTS6
  hgvsc: ENST00000311234.4:c.1038A>G
  hgvsp: ENST00000311234.4:c.1038A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000419871
  ensembl transcript: ENST00000497989
  gene symbol: INTS6
  hgvsc: ENST00000497989.1:c.504A>G
  hgvsp: ENST00000497989.1:c.504A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102786
  ensembl protein: ENSP00000417442
  ensembl transcript: ENST00000469430
  gene symbol: INTS6
  hgvsc: ENST00000469430.1:c.*866A>G
  variant of: http://identifiers.org/hgnc/14879
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102786
  ensembl transcript: ENST00000493153
  gene symbol: INTS6
  hgvsc: ENST00000493153.1:n.144A>G
  variant of: http://identifiers.org/hgnc/14879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr346Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

GenotypeQuality
all individuals: 372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26561
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7385
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10545
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510710940568632e-5
allele num: 66194
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

FS
type: SiteQuality
SIO_000300: 7.75e0

DP
type: SiteQuality
SIO_000300: 1.983172e6

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.574e1

MQ
type: SiteQuality
SIO_000300: 5.666e1

VQSLOD
type: SiteQuality
SIO_000300: -3.979e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
all individuals: 759
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10543
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3948
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517680983457277e-5
allele num: 65890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15164
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.728e1

DP
type: SiteQuality
SIO_000300: 1.96082e6

VQSLOD
type: SiteQuality
SIO_000300: -1.037e0

QD
type: SiteQuality
SIO_000300: 1.661e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 586
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10544
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 771
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.926167059149467e-5
allele num: 14438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65292
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

FS
type: SiteQuality
SIO_000300: 4.584e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

QD
type: SiteQuality
SIO_000300: 1.738e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.795e-1

DP
type: SiteQuality
SIO_000300: 1.900346e6

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6170
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19084
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10544
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1849
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533224985434363e-5
allele num: 65222
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.004e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 1.892294e6

QD
type: SiteQuality
SIO_000300: 1.309e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

GenotypeQuality
all individuals: 3866
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3755
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10541
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 434
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.186521120075937e-4
allele num: 8428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14292
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.187e0

DP
type: SiteQuality
SIO_000300: 1.882757e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeQuality
all individuals: 3649
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10541
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1348
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15177
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.07938658619203e-5
allele num: 64948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.88e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.863377e6

MQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

QD
type: SiteQuality
SIO_000300: 1.402e1

MQ
type: SiteQuality
SIO_000300: 5.779e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

GenotypeQuality
all individuals: 2112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1811
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10579
bin: 9.75e1
variant carriers: 45

GenotypeQuality
all individuals: 3400
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11306
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2946
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.795074758135444e-5
allele num: 11370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.24112961622013e-5
allele num: 13810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

East Asian
type: Population
allele count: 43
allele frequency: 5.158349328214971e-3
allele num: 8336
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.763e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.848231e6

QD
type: SiteQuality
SIO_000300: 1.647e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

GenotypeQuality
all individuals: 3344
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 504
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3684
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2956
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5272
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 138
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3008
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1874
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7326
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4081
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2064
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10774
bin: 9.75e1
variant carriers: 341

South Asian
type: Population
allele count: 1
allele frequency: 7.362685907819172e-5
allele num: 13582
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 2.907488986784141e-3
allele num: 11350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

African
type: Population
allele count: 306
allele frequency: 3.079090360233448e-2
allele num: 9938
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.710358553347638e-4
allele num: 64314
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.845891e6

VQSLOD
type: SiteQuality
SIO_000300: 5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.426e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.747e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

GenotypeQuality
all individuals: 1334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12992
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9515
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4299
bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4973
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.355104442483083e-5
allele num: 27192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4700
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.499e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.78844e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

QD
type: SiteQuality
SIO_000300: 1.389e1

VQSLOD
type: SiteQuality
SIO_000300: -6.924e-1

GenotypeQuality
all individuals: 5100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4973
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12992
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4593
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9515
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4700
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.924e-1

QD
type: SiteQuality
SIO_000300: 1.389e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.499e1

DP
type: SiteQuality
SIO_000300: 6.78844e5

GenotypeQuality
all individuals: 1409
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5074
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8632
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4527
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4349
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.15610176800345e-4
allele num: 4638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

FS
type: SiteQuality
SIO_000300: 4.184e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.452e0

MQ
type: SiteQuality
SIO_000300: 5.421e1

QD
type: SiteQuality
SIO_000300: 2.99e0

DP
type: SiteQuality
SIO_000300: 6.81224e5

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5178
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6931
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4196
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 3.944773175542406e-4
allele num: 5070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2532
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

MQ
type: SiteQuality
SIO_000300: 5.187e1

VQSLOD
type: SiteQuality
SIO_000300: -1.145e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

FS
type: SiteQuality
SIO_000300: 3.223e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

DP
type: SiteQuality
SIO_000300: 6.87845e5

GenotypeQuality
all individuals: 1554
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4196
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5178
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6931
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.145e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.42e-1

FS
type: SiteQuality
SIO_000300: 3.223e0

MQ
type: SiteQuality
SIO_000300: 5.187e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

QD
type: SiteQuality
SIO_000300: 1.108e1

DP
type: SiteQuality
SIO_000300: 6.87845e5

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 3915
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5767
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16898
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
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GenotypeQuality
all individuals: 1554
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 7255
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4589
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4162
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.556e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.423e0

QD
type: SiteQuality
SIO_000300: 2.215e1

DP
type: SiteQuality
SIO_000300: 6.94024e5

MQ
type: SiteQuality
SIO_000300: 5.454e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.107e0

GenotypeQuality
all individuals: 3660
bin: 3.75e1
variant carriers: 3212

GenotypeQuality
all individuals: 1167
bin: 8.75e1
variant carriers: 1149

GenotypeQuality
all individuals: 1071
bin: 5.75e1
variant carriers: 1043

GenotypeQuality
all individuals: 897
bin: 7.75e1
variant carriers: 858

GenotypeQuality
all individuals: 3770
bin: 2.5e0
variant carriers: 232

GenotypeQuality
all individuals: 815
bin: 6.75e1
variant carriers: 733

GenotypeQuality
all individuals: 1891
bin: 1.25e1
variant carriers: 1374

GenotypeQuality
all individuals: 1814
bin: 7.5e0
variant carriers: 959

GenotypeQuality
all individuals: 2510
bin: 4.75e1
variant carriers: 2350

GenotypeQuality
all individuals: 1625
bin: 4.25e1
variant carriers: 1504

GenotypeQuality
all individuals: 6625
bin: 2.25e1
variant carriers: 4406

GenotypeQuality
all individuals: 1125
bin: 8.25e1
variant carriers: 1080

GenotypeQuality
all individuals: 4187
bin: 1.75e1
variant carriers: 3552

GenotypeQuality
all individuals: 2910
bin: 2.75e1
variant carriers: 2350

GenotypeQuality
all individuals: 1360
bin: 6.25e1
variant carriers: 1036

GenotypeQuality
all individuals: 15549
bin: 9.75e1
variant carriers: 15380

GenotypeQuality
all individuals: 1056
bin: 9.25e1
variant carriers: 1038

African
type: Population
allele count: 5495
allele frequency: 8.981693363844394e-1
allele num: 6118
num of homozygotes: 2467

East Asian
type: Population
allele count: 3808
allele frequency: 7.692929292929293e-1
allele num: 4950
num of homozygotes: 1445

Latino
type: Population
allele count: 4789
allele frequency: 7.897427440633246e-1
allele num: 6064
num of homozygotes: 1865

European (Finnish)
type: Population
allele count: 2081
allele frequency: 6.560529634300126e-1
allele num: 3172
num of homozygotes: 644

South Asian
type: Population
allele count: 8451
allele frequency: 7.267801857585139e-1
allele num: 11628
num of homozygotes: 3070

Other
type: Population
allele count: 329
allele frequency: 6.553784860557769e-1
allele num: 502
num of homozygotes: 115

European (Non-Finnish)
type: Population
allele count: 20153
allele frequency: 6.242797843999752e-1
allele num: 32282
num of homozygotes: 6013

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 7.63819e5

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.662e1

QD
type: SiteQuality
SIO_000300: 2.676e1

GenotypeQuality
all individuals: 384
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3965
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5289
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2579
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1971
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16312
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.031405359524676e-5
allele num: 32988
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.931993817619784e-4
allele num: 5176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.709e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

DP
type: SiteQuality
SIO_000300: 7.81455e5

FS
type: SiteQuality
SIO_000300: 1.314e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

QD
type: SiteQuality
SIO_000300: 7.73e0

MQ
type: SiteQuality
SIO_000300: 5.787e1

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.595914458984998e-4
allele num: 6266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

FS
type: SiteQuality
SIO_000300: 1.314e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.709e0

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

QD
type: SiteQuality
SIO_000300: 7.73e0

DP
type: SiteQuality
SIO_000300: 7.81455e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.787e1

VQSLOD
type: SiteQuality
SIO_000300: -1.85e0

GenotypeQuality
all individuals: 1010
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2465
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2530
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 2.5e0
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3808
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3359
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.202049311559398e-4
allele num: 6246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33416
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

FS
type: SiteQuality
SIO_000300: 5.128e0

QD
type: SiteQuality
SIO_000300: 6.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.439e0

DP
type: SiteQuality
SIO_000300: 7.86701e5

MQ
type: SiteQuality
SIO_000300: 5.507e1

GenotypeQuality
all individuals: 5272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1025
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variant carriers: 0

GenotypeQuality
all individuals: 7649
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.973712382538361e-5
allele num: 33628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5236
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.4e0

VQSLOD
type: SiteQuality
SIO_000300: -1.648e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

MQ
type: SiteQuality
SIO_000300: 5.73e1

MQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.875e0

DP
type: SiteQuality
SIO_000300: 8.02735e5

QD
type: SiteQuality
SIO_000300: 5.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
all individuals: 19284
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
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variant carriers: 1

GenotypeQuality
all individuals: 260
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variant carriers: 0

GenotypeQuality
all individuals: 5266
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 0

GenotypeQuality
all individuals: 381
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GenotypeQuality
all individuals: 448
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GenotypeQuality
all individuals: 1678
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7608
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6767
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5276
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 8.11904e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.612e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
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variant carriers: 0

GenotypeQuality
all individuals: 3885
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 779
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 489
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1779
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12005
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.812464844189448e-5
allele num: 35556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

DP
type: SiteQuality
SIO_000300: 8.71639e5

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 1.299e1

FS
type: SiteQuality
SIO_000300: 8.089e0

GenotypeQuality
all individuals: 504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14513
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3658
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.799856011519078e-4
allele num: 5556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6888
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.491e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

FS
type: SiteQuality
SIO_000300: 1.1113e1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.819e0

DP
type: SiteQuality
SIO_000300: 8.98509e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 407
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GenotypeQuality
all individuals: 164
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.754669164233375e-5
allele num: 36302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.819e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQ
type: SiteQuality
SIO_000300: 5.896e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.491e0

FS
type: SiteQuality
SIO_000300: 1.1113e1

DP
type: SiteQuality
SIO_000300: 8.98509e5

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 270
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GenotypeQuality
all individuals: 16314
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.148631029986962e-5
allele num: 12272
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.136e0

DP
type: SiteQuality
SIO_000300: 9.18057e5

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQ
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SIO_000300: 5.716e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

VQSLOD
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SIO_000300: -2.019e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.062e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 167
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7446
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.736345350456444e-5
allele num: 12926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 7.49e0

VQSLOD
type: SiteQuality
SIO_000300: -4.815e-1

DP
type: SiteQuality
SIO_000300: 1.030891e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

GenotypeQuality
all individuals: 282
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38577
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GenotypeQuality
all individuals: 10798
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.842502855879427e-5
allele num: 54274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14344
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.966e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -1.733e0

FS
type: SiteQuality
SIO_000300: 8.5e-1

MQ
type: SiteQuality
SIO_000300: 5.872e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

QD
type: SiteQuality
SIO_000300: 2.818e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 1.250357e6

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
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variant carriers: 0

GenotypeQuality
all individuals: 2481
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 885
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 469
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 449
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GenotypeQuality
all individuals: 606
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.844269853564974e-5
allele num: 54222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8836
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

DP
type: SiteQuality
SIO_000300: 1.247065e6

VQSLOD
type: SiteQuality
SIO_000300: -1.394e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 9.7e-1

QD
type: SiteQuality
SIO_000300: 9.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.866e1

GenotypeQuality
all individuals: 428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1229
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.0315659170621e-4
allele num: 9694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.231e1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

MQ
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SIO_000300: 5.844e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.16e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.246765e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
all individuals: 1307
bin: 2.75e1
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 17

GenotypeQuality
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bin: 9.75e1
variant carriers: 2028

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
all individuals: 1229
bin: 3.25e1
variant carriers: 5

South Asian
type: Population
allele count: 608
allele frequency: 4.24937098126922e-2
allele num: 14308
num of homozygotes: 15

African
type: Population
allele count: 16
allele frequency: 1.815705855651385e-3
allele num: 8812
num of homozygotes: 0

Other
type: Population
allele count: 30
allele frequency: 3.865979381443299e-2
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 571
allele frequency: 7.405966277561608e-2
allele num: 7710
num of homozygotes: 19

European (Finnish)
type: Population
allele count: 35
allele frequency: 6.201275690999292e-3
allele num: 5644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 786
allele frequency: 1.477610256795879e-2
allele num: 53194
num of homozygotes: 7

Latino
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allele count: 109
allele frequency: 1.124406849597689e-2
allele num: 9694
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 2.16e-2

MQ
type: SiteQuality
SIO_000300: 5.844e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

QD
type: SiteQuality
SIO_000300: 1.231e1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.246765e6

GenotypeDepth
all individuals: 75
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19567
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GenotypeQuality
all individuals: 1811
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GenotypeQuality
all individuals: 511
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GenotypeQuality
all individuals: 414
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GenotypeQuality
all individuals: 511
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GenotypeQuality
all individuals: 1669
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.4589774078478e-4
allele num: 6728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46140
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.696e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 3.108e0

DP
type: SiteQuality
SIO_000300: 1.020761e6

QD
type: SiteQuality
SIO_000300: 5.03e0

GenotypeQuality
all individuals: 1815
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
all individuals: 559
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GenotypeQuality
all individuals: 134
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13184
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.986491855383393e-4
allele num: 5034
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.206854936036688e-4
allele num: 8286
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European (Non-Finnish)
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allele count: 3
allele frequency: 6.543360670040132e-5
allele num: 45848
num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
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QD
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MQ
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SIO_000300: 5.911e1

ClippingRankSum
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SIO_000300: 4.1e-1

InbreedingCoeff
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SIO_000300: -4.6e-3

VQSLOD
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SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.49e0

DP
type: SiteQuality
SIO_000300: 1.013107e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.593879502709595e-4
allele num: 6274
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42760
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -7.7e-3

MQRankSum
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SIO_000300: 1.01e0

BaseQRankSum
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ClippingRankSum
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FS
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MQ
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SIO_000300: 5.904e1

QD
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ReadPosRankSum
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VQSLOD
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DP
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SIO_000300: 9.06431e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40264
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4604
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 8.114248620577734e-5
allele num: 12324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 5.669999999999999e-1

VQSLOD
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InbreedingCoeff
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SIO_000300: -9.5e-3

BaseQRankSum
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SIO_000300: 2.46e0

QD
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SIO_000300: 1.262e1

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 1.38e0

DP
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SIO_000300: 8.58337e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

South Asian
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allele count: 10
allele frequency: 8.567511994516792e-4
allele num: 11672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7622
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
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SIO_000300: 8.34671e5

FS
type: SiteQuality
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VQSLOD
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SIO_000300: -6.335e-1

MQRankSum
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SIO_000300: 8.129999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.876172607879925e-4
allele num: 5330
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -9.591e-1

QD
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MQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -1.26e-2

ReadPosRankSum
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FS
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DP
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SIO_000300: 8.34987e5

BaseQRankSum
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SIO_000300: 9.96e-1

ClippingRankSum
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SIO_000300: 7.27e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 7.056167090036692e-5
allele num: 14172
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
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DP
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MQ
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BaseQRankSum
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SIO_000300: 2.11e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65692
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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Other
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East Asian
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South Asian
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BaseQRankSum
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SIO_000300: 1.35e-1

ClippingRankSum
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InbreedingCoeff
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FS
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DP
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele num: 14296
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African
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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MQ
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SIO_000300: 5.967e1

ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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DP
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VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: 1.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.344116268166901e-4
allele num: 8532
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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SIO_000300: 9.27e-1

MQ
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ClippingRankSum
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SIO_000300: -7.47e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.028926245645919e-5
allele num: 66030
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African
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South Asian
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Other
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Latino
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VQSLOD
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ClippingRankSum
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DP
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QD
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
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allele num: 66290
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: 4.3e-3

MQ
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SIO_000300: 5.94e1

VQSLOD
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ClippingRankSum
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SIO_000300: -3.94e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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InbreedingCoeff
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DP
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FS
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MQ
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BaseQRankSum
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Non-Finnish)
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allele num: 66412
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Latino
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South Asian
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African
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66480
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East Asian
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European (Finnish)
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Other
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African
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Latino
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South Asian
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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VQSLOD
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FS
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66516
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Other
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East Asian
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Latino
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African
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European (Finnish)
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South Asian
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
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SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

DP
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SIO_000300: 3.032503e6

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -3.88e-1

BaseQRankSum
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: -1.99e-1

FS
type: SiteQuality
SIO_000300: 1.446e1

DP
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SIO_000300: 3.032714e6

MQRankSum
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SIO_000300: 1.07e0

VQSLOD
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SIO_000300: -2.076e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.217e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

ClippingRankSum
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SIO_000300: -3.35e-1

DP
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QD
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MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
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FS
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SIO_000300: 8.169999999999999e-1

MQRankSum
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SIO_000300: 1.57e-1

VQSLOD
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SIO_000300: 1.84e0

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -4.266e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
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SIO_000300: -1.069e0

MQRankSum
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SIO_000300: 4.18e-1

FS
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SIO_000300: 4.452e0

BaseQRankSum
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SIO_000300: 5.659999999999999e-1

VQSLOD
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SIO_000300: 1.14e0

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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QD
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SIO_000300: 1.253e1

ReadPosRankSum
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SIO_000300: 2.1e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.659832246039142e-4
allele num: 8584
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 2.7e0

ReadPosRankSum
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FS
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ClippingRankSum
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QD
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MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 1.63e0

InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 9.79e-1

MQ
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VQSLOD
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

Latino
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African
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European (Finnish)
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num of homozygotes: 0

Other
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MQRankSum
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QD
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FS
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 1.164958061509786e-4
allele num: 8584
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

South Asian
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FS
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ClippingRankSum
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 4.6e-3

DP
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 6.989748369058714e-4
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Other
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South Asian
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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DP
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.67e-1

QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

African
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allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 5.962e1

DP
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InbreedingCoeff
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SIO_000300: 5.9e-3

BaseQRankSum
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SIO_000300: -3.674e0

MQRankSum
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FS
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ClippingRankSum
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SIO_000300: -1.181e0

ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 16160
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Other
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African
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allele frequency: 0.0e0
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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SIO_000300: 2.488e0

MQ
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SIO_000300: 6.012e1

MQRankSum
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SIO_000300: 1.27e0

QD
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DP
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SIO_000300: 3.019596e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66520
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African
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East Asian
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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QD
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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African
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allele count: 0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66520
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DP
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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allele num: 66520
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East Asian
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Latino
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South Asian
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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South Asian
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allele num: 15884
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African
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Other
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European (Non-Finnish)
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ReadPosRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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MQRankSum
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SIO_000300: 2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

QD
type: SiteQuality
SIO_000300: 9.6e0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39023
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2283
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15750
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.516575833308241e-5
allele num: 66422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.714e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

FS
type: SiteQuality
SIO_000300: 1.9544e1

DP
type: SiteQuality
SIO_000300: 2.996812e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.475e1

GenotypeQuality
all individuals: 2236
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2299
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39025
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 1480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 2.996456e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 2.679e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-2

GenotypeQuality
all individuals: 11495
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5661
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variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2705
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1119
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 80
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21168
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 269
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4472
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15452
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.06e-1

QD
type: SiteQuality
SIO_000300: 1.2e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e0

DP
type: SiteQuality
SIO_000300: 2.433667e6

VQSLOD
type: SiteQuality
SIO_000300: 2.07e-1

GenotypeQuality
all individuals: 922
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1127
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variant carriers: 0

GenotypeQuality
all individuals: 21169
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 128
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5660
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4471
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.699321047526673e-5
allele num: 10310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.659025096525096e-4
allele num: 66304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.274e0

QD
type: SiteQuality
SIO_000300: 1.226e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 2.433783e6

GenotypeQuality
all individuals: 482
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5665
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variant carriers: 0

GenotypeQuality
all individuals: 232
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 805
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variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4472
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
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variant carriers: 0

GenotypeQuality
all individuals: 4195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 11625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21158
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 645
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508341126429153e-5
allele num: 66298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

FS
type: SiteQuality
SIO_000300: 1.424e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 2.43369e6

QD
type: SiteQuality
SIO_000300: 1.274e1

GenotypeQuality
all individuals: 5712
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 546
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variant carriers: 0

GenotypeQuality
all individuals: 169
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 549
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variant carriers: 0

GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
all individuals: 4195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2139
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.414368184733804e-5
allele num: 15590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.316e1

FS
type: SiteQuality
SIO_000300: 3.772e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.832e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.477e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.006e0

DP
type: SiteQuality
SIO_000300: 2.442652e6

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4202
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 184
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 5880
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variant carriers: 0

GenotypeQuality
all individuals: 2730
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variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.062186172267285e-3
allele num: 10356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 2.46731e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.246e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 184
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 15051
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4483
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variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 1.246e1