1-156834271-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834271
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834271
    reference: chr 1
allele count: 4
allele frequency: 3.395412797310833e-5
allele num: 117806
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.287+51G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.197+51G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-9154G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.345+51G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.309+51G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.197+51G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.287+51G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.287+51G>C
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11041
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10666
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3993
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-156834272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834272
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834272
    reference: chr 1
allele count: 1
allele frequency: 8.524131817174421e-6
allele num: 117314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.197+52A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.287+52A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.345+52A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.309+52A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.197+52A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.287+52A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-9153A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.287+52A>G
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11056
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4830
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

1-156834472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834472
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834472
    reference: chr 1
allele count: 1
allele frequency: 8.751356460251339e-6
allele num: 114268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-48C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8953C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-48C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-48C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-48C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-48C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-48C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-48C>T
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6100
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-156834474-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834474
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834474
    reference: chr 1
allele count: 1
allele frequency: 8.743092956564315e-6
allele num: 114376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-46A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-46A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-46A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8951A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-46A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-46A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-46A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-46A>G
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3655
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3698
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

1-156834475-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834475
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834475
    reference: chr 1
allele count: 1
allele frequency: 8.738356140442859e-6
allele num: 114438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-45G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-45G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-45G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-45G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-45G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-45G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8950G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-45G>C
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6094
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3431
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

1-156834483-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834483
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834483
    reference: chr 1
allele count: 1
allele frequency: 8.697316008279845e-6
allele num: 114978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-37G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-37G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-37G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-37G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-37G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-37G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-37G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8942G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

1-156834486-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834486
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834486
    reference: chr 1
allele count: 1
allele frequency: 8.680856974200494e-6
allele num: 115196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-34A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8939A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-34A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-34A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-34A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-34A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-34A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-34A>G
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-156834505-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834505
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834505
    reference: chr 1
allele count: 6
allele frequency: 5.09987250318742e-5
allele num: 117650
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-15T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-15T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-15T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-15T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-15T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-15T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8920T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-15T>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-156834509-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834509
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834509
    reference: chr 1
allele count: 2
allele frequency: 1.693652191585936e-5
allele num: 118088
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-11C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-11C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-11C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-11C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8916C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-11C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-11C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-11C>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6119
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

1-156834510-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834510
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834510
    reference: chr 1
allele count: 1
allele frequency: 8.463244130740195e-6
allele num: 118158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-10C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-10C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-10C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8915C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-10C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-10C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-10C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-10C>G
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-156834510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834510
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834510
    reference: chr 1
allele count: 1
allele frequency: 8.463244130740195e-6
allele num: 118158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-10C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-10C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-10C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-10C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-10C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8915C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-10C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-10C>T
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

1-156834511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834511
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834511
    reference: chr 1
allele count: 2
allele frequency: 1.691160305085319e-5
allele num: 118262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8914C>T
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16185
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-156834512-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834512
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834512
    reference: chr 1
allele count: 1
allele frequency: 8.442095665828085e-6
allele num: 118454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-8C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-8C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8913C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-8C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-8C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-8C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-8C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-8C>G
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5876
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 7.25e1
  variant carriers: 0
hgvs: c.288-8C>G
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

1-156834512-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834512
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834512
    reference: chr 1
allele count: 318
allele frequency: 2.684586421733331e-3
allele num: 118454
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-8C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-8C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-8C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-8C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-8C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-8C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8913C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-8C>T
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27965
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 16260
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 3.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: c.288-8C>T
num of homozygotes: 2
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-156834514-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834514
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834514
    reference: chr 1
allele count: 1
allele frequency: 8.425735566714975e-6
allele num: 118684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-6C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8911C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-6C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-6C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-6C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-6C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-6C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-6C>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6055
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
hgvs: c.288-6C>A
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-156834515-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834515
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834515
    reference: chr 1
allele count: 6
allele frequency: 5.051610621853268e-5
allele num: 118774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8910C>T
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16559
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: c.288-5C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-156834520-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834520
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834520
    reference: chr 1
allele count: 2
allele frequency: 1.678866429386878e-5
allele num: 119128
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.288C>A
  hgvsp: ENST00000524377.1:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.346C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8905C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.288C>A
  hgvsp: ENST00000368196.3:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.310C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.198C>A
  hgvsp: ENST00000497019.2:c.198C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.288C>A
  hgvsp: ENST00000358660.3:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.198C>A
  hgvsp: ENST00000392302.2:c.198C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 7.75e1
  variant carriers: 0
hgvs: c.288C>A
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

1-156834524-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834524
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834524
    reference: chr 1
allele count: 1
allele frequency: 8.378156470450242e-6
allele num: 119358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8901A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.292A>G
  hgvsp: ENSP00000357179.3:p.Ile98Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.292A>G
  hgvsp: ENSP00000351486.3:p.Ile98Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.292A>G
  hgvsp: ENSP00000431418.1:p.Ile98Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.202A>G
  hgvsp: ENSP00000436804.1:p.Ile68Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.202A>G
  hgvsp: ENSP00000376120.2:p.Ile68Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.350A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.314A>G
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6055
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile98Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-156834527-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834527
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834527
    reference: chr 1
allele count: 20
allele frequency: 1.674368762976358e-4
allele num: 119448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.205G>A
  hgvsp: ENSP00000376120.2:p.Val69Met
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.353G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.205G>A
  hgvsp: ENSP00000436804.1:p.Val69Met
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.295G>A
  hgvsp: ENSP00000351486.3:p.Val99Met
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.295G>A
  hgvsp: ENSP00000431418.1:p.Val99Met
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.295G>A
  hgvsp: ENSP00000357179.3:p.Val99Met
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8898G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.317G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16999
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6067
  bin: 9.75e1
  variant carriers: 20
hgvs: p.Val99Met
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

1-156834533-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834533
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834533
    reference: chr 1
allele count: 1
allele frequency: 8.358967500334358e-6
allele num: 119632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8892A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.211A>G
  hgvsp: ENSP00000436804.1:p.Ser71Gly
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.301A>G
  hgvsp: ENSP00000357179.3:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.211A>G
  hgvsp: ENSP00000376120.2:p.Ser71Gly
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.301A>G
  hgvsp: ENSP00000351486.3:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.323A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.359A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.301A>G
  hgvsp: ENSP00000431418.1:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser101Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD

1-156834534-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834534
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834534
    reference: chr 1
allele count: 1
allele frequency: 8.360644772924887e-6
allele num: 119608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.212G>A
  hgvsp: ENSP00000376120.2:p.Ser71Asn
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.324G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.360G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.302G>A
  hgvsp: ENSP00000431418.1:p.Ser101Asn
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.212G>A
  hgvsp: ENSP00000436804.1:p.Ser71Asn
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.302G>A
  hgvsp: ENSP00000357179.3:p.Ser101Asn
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.302G>A
  hgvsp: ENSP00000351486.3:p.Ser101Asn
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8891G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser101Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

1-156834537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834537
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834537
    reference: chr 1
allele count: 1
allele frequency: 8.359386755387625e-6
allele num: 119626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.305G>A
  hgvsp: ENSP00000357179.3:p.Gly102Asp
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.215G>A
  hgvsp: ENSP00000376120.2:p.Gly72Asp
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.305G>A
  hgvsp: ENSP00000431418.1:p.Gly102Asp
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.215G>A
  hgvsp: ENSP00000436804.1:p.Gly72Asp
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.327G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.305G>A
  hgvsp: ENSP00000351486.3:p.Gly102Asp
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.363G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8888G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly102Asp
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

1-156834541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834541
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834541
    reference: chr 1
allele count: 2
allele frequency: 1.673500125512509e-5
allele num: 119510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.367C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.331C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.219C>T
  hgvsp: ENST00000392302.2:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.219C>T
  hgvsp: ENST00000497019.2:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.309C>T
  hgvsp: ENST00000358660.3:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.309C>T
  hgvsp: ENST00000368196.3:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.309C>T
  hgvsp: ENST00000524377.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8884C>T
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu103Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

1-156834542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834542
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834542
    reference: chr 1
allele count: 1
allele frequency: 8.373245805003851e-6
allele num: 119428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.310C>T
  hgvsp: ENSP00000351486.3:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.310C>T
  hgvsp: ENSP00000357179.3:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.220C>T
  hgvsp: ENSP00000436804.1:p.Arg74Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8883C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.368C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.332C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.220C>T
  hgvsp: ENSP00000376120.2:p.Arg74Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.310C>T
  hgvsp: ENSP00000431418.1:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6082
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg104Cys
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-156834543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834543
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834543
    reference: chr 1
allele count: 5
allele frequency: 4.186062087672884e-5
allele num: 119444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.221G>A
  hgvsp: ENSP00000436804.1:p.Arg74His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.333G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.369G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.311G>A
  hgvsp: ENSP00000357179.3:p.Arg104His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.221G>A
  hgvsp: ENSP00000376120.2:p.Arg74His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8882G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.311G>A
  hgvsp: ENSP00000351486.3:p.Arg104His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.311G>A
  hgvsp: ENSP00000431418.1:p.Arg104His
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28066
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6054
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg104His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

1-156834547-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834547
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834547
    reference: chr 1
allele count: 24
allele frequency: 2.01048804597316e-4
allele num: 119374
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.315C>T
  hgvsp: ENST00000524377.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.373C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.225C>T
  hgvsp: ENST00000497019.2:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8878C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.315C>T
  hgvsp: ENST00000358660.3:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.337C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.225C>T
  hgvsp: ENST00000392302.2:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.315C>T
  hgvsp: ENST00000368196.3:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17346
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27925
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe105Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

1-156834548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834548
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834548
    reference: chr 1
allele count: 1
allele frequency: 8.380684199058012e-6
allele num: 119322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.338G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.316G>A
  hgvsp: ENSP00000357179.3:p.Val106Met
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.316G>A
  hgvsp: ENSP00000431418.1:p.Val106Met
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.374G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.316G>A
  hgvsp: ENSP00000351486.3:p.Val106Met
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.226G>A
  hgvsp: ENSP00000376120.2:p.Val76Met
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.226G>A
  hgvsp: ENSP00000436804.1:p.Val76Met
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8877G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17357
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6047
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val106Met
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

1-156834552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834552
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834552
    reference: chr 1
allele count: 11
allele frequency: 9.231285666330984e-5
allele num: 119160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.230C>T
  hgvsp: ENSP00000436804.1:p.Ala77Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.230C>T
  hgvsp: ENSP00000376120.2:p.Ala77Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.378C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.320C>T
  hgvsp: ENSP00000351486.3:p.Ala107Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.320C>T
  hgvsp: ENSP00000357179.3:p.Ala107Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.342C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8873C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.320C>T
  hgvsp: ENSP00000431418.1:p.Ala107Val
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17431
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27491
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala107Val
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

1-156834553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834553
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834553
    reference: chr 1
allele count: 3
allele frequency: 2.517834662190516e-5
allele num: 119150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.321G>A
  hgvsp: ENST00000358660.3:c.321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.231G>A
  hgvsp: ENST00000497019.2:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.231G>A
  hgvsp: ENST00000392302.2:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.343G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.321G>A
  hgvsp: ENST00000368196.3:c.321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8872G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.321G>A
  hgvsp: ENST00000524377.1:c.321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.379G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Ala107Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

1-156834558-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834558
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834558
    reference: chr 1
allele count: 13
allele frequency: 1.09420241061208e-4
allele num: 118808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.326A>G
  hgvsp: ENSP00000351486.3:p.Asp109Gly
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.384A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.326A>G
  hgvsp: ENSP00000431418.1:p.Asp109Gly
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.236A>G
  hgvsp: ENSP00000376120.2:p.Asp79Gly
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.236A>G
  hgvsp: ENSP00000436804.1:p.Asp79Gly
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.326A>G
  hgvsp: ENSP00000357179.3:p.Asp109Gly
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.348A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8867A>G
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26983
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5818
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6056
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp109Gly
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

1-156834573-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834573
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834573
    reference: chr 1
allele count: 1
allele frequency: 8.60229853416833e-6
allele num: 116248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.363C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.341C>G
  hgvsp: ENSP00000351486.3:p.Thr114Ser
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.251C>G
  hgvsp: ENSP00000376120.2:p.Thr84Ser
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8852C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.341C>G
  hgvsp: ENSP00000357179.3:p.Thr114Ser
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.399C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.341C>G
  hgvsp: ENSP00000431418.1:p.Thr114Ser
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.251C>G
  hgvsp: ENSP00000436804.1:p.Thr84Ser
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr114Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

1-156834574-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834574
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834574
    reference: chr 1
allele count: 3
allele frequency: 2.581400151442142e-5
allele num: 116216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.252T>A
  hgvsp: ENST00000392302.2:c.252T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8851T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.342T>A
  hgvsp: ENST00000358660.3:c.342T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.342T>A
  hgvsp: ENST00000368196.3:c.342T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.252T>A
  hgvsp: ENST00000497019.2:c.252T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.364T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.342T>A
  hgvsp: ENST00000524377.1:c.342T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.400T>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4541
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr114Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-156834577-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834577
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834577
    reference: chr 1
allele count: 1
allele frequency: 8.76439551964101e-6
allele num: 114098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.345T>G
  hgvsp: ENST00000368196.3:c.345T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.345T>G
  hgvsp: ENST00000524377.1:c.345T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.367T>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.255T>G
  hgvsp: ENST00000392302.2:c.255T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8848T>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.403T>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.255T>G
  hgvsp: ENST00000497019.2:c.255T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.345T>G
  hgvsp: ENST00000358660.3:c.345T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6500
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro115Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

1-156834579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834579
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834579
    reference: chr 1
allele count: 1
allele frequency: 8.777011252128426e-6
allele num: 113934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.369G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8846G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.257G>A
  hgvsp: ENSP00000376120.2:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.347G>A
  hgvsp: ENSP00000357179.3:p.Arg116Gln
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.347G>A
  hgvsp: ENSP00000431418.1:p.Arg116Gln
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.257G>A
  hgvsp: ENSP00000436804.1:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.347G>A
  hgvsp: ENSP00000351486.3:p.Arg116Gln
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.405G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6556
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6039
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg116Gln
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-156834580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834580
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834580
    reference: chr 1
allele count: 1
allele frequency: 8.800183043807312e-6
allele num: 113634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.258G>A
  hgvsp: ENST00000497019.2:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.370G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.258G>A
  hgvsp: ENST00000392302.2:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.348G>A
  hgvsp: ENST00000368196.3:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.348G>A
  hgvsp: ENST00000358660.3:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.406G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.348G>A
  hgvsp: ENST00000524377.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8845G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6039
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg116Arg
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-156834587-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834587
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834587
    reference: chr 1
allele count: 2
allele frequency: 1.803426510369702e-5
allele num: 110900
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.355C>T
  hgvsp: ENSP00000431418.1:p.Arg119Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.377C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.413C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.265C>T
  hgvsp: ENSP00000376120.2:p.Arg89Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.265C>T
  hgvsp: ENSP00000436804.1:p.Arg89Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8838C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.355C>T
  hgvsp: ENSP00000351486.3:p.Arg119Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.355C>T
  hgvsp: ENSP00000357179.3:p.Arg119Cys
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9327
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg119Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

1-156834588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834588
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834588
    reference: chr 1
allele count: 7
allele frequency: 6.367688529063949e-5
allele num: 109930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.378G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.266G>A
  hgvsp: ENSP00000436804.1:p.Arg89His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.414G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.266G>A
  hgvsp: ENSP00000376120.2:p.Arg89His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.356G>A
  hgvsp: ENSP00000431418.1:p.Arg119His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.356G>A
  hgvsp: ENSP00000357179.3:p.Arg119His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.356G>A
  hgvsp: ENSP00000351486.3:p.Arg119His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8837G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15309
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6042
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg119His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

1-156834589-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834589
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834589
    reference: chr 1
allele count: 2
allele frequency: 1.818115704883459e-5
allele num: 110004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.357C>T
  hgvsp: ENST00000358660.3:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.267C>T
  hgvsp: ENST00000497019.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.267C>T
  hgvsp: ENST00000392302.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.357C>T
  hgvsp: ENST00000368196.3:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.379C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.415C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.357C>T
  hgvsp: ENST00000524377.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8836C>T
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5226
  bin: 6.75e1
  variant carriers: 0
hgvs: c.357C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS

1-156834605-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834605
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834605
    reference: chr 1
allele count: 1
allele frequency: 9.830521804097361e-6
allele num: 101724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.269+14G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.417+14G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.269+14G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8820G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.359+14G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.395G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.359+14G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.359+14G>C
  variant of: http://identifiers.org/hgnc/8031
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4202
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

1-156834612-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834612
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834612
    reference: chr 1
allele count: 1
allele frequency: 1.000480230510645e-5
allele num: 99952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.402G>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.269+21G>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.417+21G>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.359+21G>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8813G>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.359+21G>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.269+21G>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.359+21G>T
  variant of: http://identifiers.org/hgnc/8031
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

1-156834617-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834617
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834617
    reference: chr 1
allele count: 2
allele frequency: 2.0658596041813e-5
allele num: 96812
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.417+26G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.359+26G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.269+26G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.359+26G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.269+26G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.359+26G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.407G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8808G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6840
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16354
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

1-156834623-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834623
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834622
    reference: chr 1
allele count: 1
allele frequency: 1.048042257063805e-5
allele num: 95416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.417delG
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.359+36delG
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.359+36delG
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.269+36delG
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.269+36delG
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.359+36delG
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.417+36delG
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8798delG
  variant of: http://identifiers.org/hgnc/8031
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4785
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: TG
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

1-156834627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834627
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834627
    reference: chr 1
allele count: 20
allele frequency: 2.124630845390613e-4
allele num: 94134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.269+36G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.359+36G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.359+36G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.359+36G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8798G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.269+36G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.417G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.417+36G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11037
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17485
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6023
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 8083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-156834635-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156834635
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156834635
    reference: chr 1
allele count: 4
allele frequency: 4.41520596935847e-5
allele num: 90596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-8790C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.359+44C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.359+44C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000533630
  gene symbol: NTRK1
  hgvsc: ENST00000533630.1:n.425C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.359+44C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.269+44C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.269+44C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.417+44C>A
  variant of: http://identifiers.org/hgnc/8031
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16409
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

1-156836651-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836651
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836651
    reference: chr 1
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.360-51T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.418-51T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.360-51T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6774T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.360-51T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.270-51T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.270-51T>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33734
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-156836657-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836657
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836657
    reference: chr 1
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.360-45C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.270-45C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6768C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.360-45C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.270-45C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.360-45C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.418-45C>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7694
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-156836657-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836657
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836657
    reference: chr 1
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.360-45C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.360-45C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.418-45C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6768C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.360-45C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.270-45C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.270-45C>G
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8756
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5340
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-156836661-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836661
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836661
    reference: chr 1
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.270-41T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.418-41T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.360-41T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.360-41T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6764T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.360-41T>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.270-41T>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5394
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33717
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

1-156836679-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836679
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836679
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.360-23T>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.270-23T>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.360-23T>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.418-23T>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6746T>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.360-23T>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.270-23T>G
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

1-156836681-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836681
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836681
    reference: chr 1
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.360-21G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.418-21G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.360-21G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.360-21G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.270-21G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6744G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.270-21G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4053
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

1-156836693-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836693
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836693
    reference: chr 1
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.360-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.270-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.418-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6732C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.360-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.360-9C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.270-9C>T
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-156836694-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836694
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836694
    reference: chr 1
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.360-8G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.360-8G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.270-8G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.360-8G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6731G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.418-8G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.270-8G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4056
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 8.75e1
  variant carriers: 0
hgvs: c.360-8G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-156836697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836697
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836697
    reference: chr 1
allele count: 6
allele frequency: 4.942013705851344e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.418-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.270-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.360-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.360-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6728C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.360-5C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.270-5C>T
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4285
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5470
  bin: 6.25e1
  variant carriers: 0
hgvs: c.360-5C>T
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

1-156836698-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836698
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836698
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6727G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.360-4G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.360-4G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.270-4G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.418-4G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.270-4G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.360-4G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33708
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: c.360-4G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS

1-156836708-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836708
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836708
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.366C>G
  hgvsp: ENST00000524377.1:c.366C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.276C>G
  hgvsp: ENST00000497019.2:c.276C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.366C>G
  hgvsp: ENST00000368196.3:c.366C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.424C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.366C>G
  hgvsp: ENST00000358660.3:c.366C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6717C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.276C>G
  hgvsp: ENST00000392302.2:c.276C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33707
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu122Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

1-156836714-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836714
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836714
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.282C>T
  hgvsp: ENST00000497019.2:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.430C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.282C>T
  hgvsp: ENST00000392302.2:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6711C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.372C>T
  hgvsp: ENST00000358660.3:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.372C>T
  hgvsp: ENST00000524377.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.372C>T
  hgvsp: ENST00000368196.3:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4282
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe124Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

1-156836717-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836717
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836717
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6708C>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.375C>G
  hgvsp: ENSP00000431418.1:p.Asn125Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.375C>G
  hgvsp: ENSP00000351486.3:p.Asn125Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.375C>G
  hgvsp: ENSP00000357179.3:p.Asn125Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.285C>G
  hgvsp: ENSP00000436804.1:p.Asn95Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.285C>G
  hgvsp: ENSP00000376120.2:p.Asn95Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.433C>G
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5482
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn125Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

1-156836717-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836717
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836717
    reference: chr 1
allele count: 6
allele frequency: 4.941850887885876e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.285C>T
  hgvsp: ENST00000392302.2:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.285C>T
  hgvsp: ENST00000497019.2:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.433C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.375C>T
  hgvsp: ENST00000358660.3:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6708C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.375C>T
  hgvsp: ENST00000368196.3:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.375C>T
  hgvsp: ENST00000524377.1:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4055
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5482
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn125Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-156836719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836719
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836719
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.287C>T
  hgvsp: ENSP00000436804.1:p.Ala96Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.435C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.377C>T
  hgvsp: ENSP00000357179.3:p.Ala126Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.377C>T
  hgvsp: ENSP00000351486.3:p.Ala126Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6706C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.377C>T
  hgvsp: ENSP00000431418.1:p.Ala126Val
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.287C>T
  hgvsp: ENSP00000376120.2:p.Ala96Val
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33701
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala126Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-156836723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836723
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836723
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.381G>A
  hgvsp: ENST00000358660.3:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.381G>A
  hgvsp: ENST00000524377.1:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.439G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6702G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.291G>A
  hgvsp: ENST00000497019.2:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.291G>A
  hgvsp: ENST00000392302.2:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.381G>A
  hgvsp: ENST00000368196.3:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4282
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu127Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

1-156836736-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836736
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836736
    reference: chr 1
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.394T>C
  hgvsp: ENSP00000357179.3:p.Trp132Arg
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.452T>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.304T>C
  hgvsp: ENSP00000376120.2:p.Trp102Arg
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.394T>C
  hgvsp: ENSP00000351486.3:p.Trp132Arg
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.304T>C
  hgvsp: ENSP00000436804.1:p.Trp102Arg
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.394T>C
  hgvsp: ENSP00000431418.1:p.Trp132Arg
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6689T>C
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33699
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Trp132Arg
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-156836738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836738
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836738
    reference: chr 1
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.306G>A
  hgvsp: ENSP00000376120.2:p.Trp102Ter
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.396G>A
  hgvsp: ENSP00000431418.1:p.Trp132Ter
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.396G>A
  hgvsp: ENSP00000357179.3:p.Trp132Ter
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.454G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6687G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.306G>A
  hgvsp: ENSP00000436804.1:p.Trp102Ter
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.396G>A
  hgvsp: ENSP00000351486.3:p.Trp132Ter
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33697
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp132Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-156836738-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836738
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836738
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.454G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.306G>C
  hgvsp: ENSP00000436804.1:p.Trp102Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.306G>C
  hgvsp: ENSP00000376120.2:p.Trp102Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.396G>C
  hgvsp: ENSP00000351486.3:p.Trp132Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.396G>C
  hgvsp: ENSP00000431418.1:p.Trp132Cys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6687G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.396G>C
  hgvsp: ENSP00000357179.3:p.Trp132Cys
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Trp132Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-156836743-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836743
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836743
    reference: chr 1
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.311C>A
  hgvsp: ENSP00000436804.1:p.Thr104Asn
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.459C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.401C>A
  hgvsp: ENSP00000357179.3:p.Thr134Asn
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.401C>A
  hgvsp: ENSP00000351486.3:p.Thr134Asn
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.401C>A
  hgvsp: ENSP00000431418.1:p.Thr134Asn
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6682C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.311C>A
  hgvsp: ENSP00000376120.2:p.Thr104Asn
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr134Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-156836748-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836748
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836748
    reference: chr 1
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.406C>A
  hgvsp: ENSP00000351486.3:p.Gln136Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.316C>A
  hgvsp: ENSP00000376120.2:p.Gln106Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6677C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.406C>A
  hgvsp: ENSP00000357179.3:p.Gln136Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.464C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.406C>A
  hgvsp: ENSP00000431418.1:p.Gln136Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.316C>A
  hgvsp: ENSP00000436804.1:p.Gln106Lys
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4054
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33693
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4284
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln136Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

1-156836749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836749
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836749
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.407A>G
  hgvsp: ENSP00000351486.3:p.Gln136Arg
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.317A>G
  hgvsp: ENSP00000376120.2:p.Gln106Arg
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.407A>G
  hgvsp: ENSP00000357179.3:p.Gln136Arg
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6676A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.407A>G
  hgvsp: ENSP00000431418.1:p.Gln136Arg
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.465A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.317A>G
  hgvsp: ENSP00000436804.1:p.Gln106Arg
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4054
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln136Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

1-156836750-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836750
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836750
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.466G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.408G>C
  hgvsp: ENSP00000431418.1:p.Gln136His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.408G>C
  hgvsp: ENSP00000357179.3:p.Gln136His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.408G>C
  hgvsp: ENSP00000351486.3:p.Gln136His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6675G>C
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.318G>C
  hgvsp: ENSP00000436804.1:p.Gln106His
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.318G>C
  hgvsp: ENSP00000376120.2:p.Gln106His
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln136His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-156836766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836766
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836766
    reference: chr 1
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.334G>A
  hgvsp: ENSP00000436804.1:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.482G>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.424G>A
  hgvsp: ENSP00000357179.3:p.Glu142Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.424G>A
  hgvsp: ENSP00000351486.3:p.Glu142Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.334G>A
  hgvsp: ENSP00000376120.2:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.424G>A
  hgvsp: ENSP00000431418.1:p.Glu142Lys
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6659G>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8752
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu142Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

1-156836774-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836774
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836774
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.428+4A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6651A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.428+4A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.428+4A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.338+4A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.486+4A>G
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.338+4A>G
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5416
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4270
  bin: 6.75e1
  variant carriers: 0
hgvs: c.428+4A>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/1-156836782-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836782
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836782
    reference: chr 1
allele count: 368
allele frequency: 3.031301482701812e-3
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.338+12C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.428+12C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.338+12C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6643C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.428+12C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.428+12C>A
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.486+12C>A
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 9.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 5.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 6.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

1-156836782-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156836782
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156836782
    reference: chr 1
allele count: 7
allele frequency: 5.766062602965403e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000436804
  ensembl transcript: ENST00000497019
  gene symbol: NTRK1
  hgvsc: ENST00000497019.2:c.338+12C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000431418
  ensembl transcript: ENST00000524377
  gene symbol: NTRK1
  hgvsc: ENST00000524377.1:c.428+12C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000351486
  ensembl transcript: ENST00000358660
  gene symbol: NTRK1
  hgvsc: ENST00000358660.3:c.428+12C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000489021
  gene symbol: NTRK1
  hgvsc: ENST00000489021.2:n.313-6643C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000357179
  ensembl transcript: ENST00000368196
  gene symbol: NTRK1
  hgvsc: ENST00000368196.3:c.428+12C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl protein: ENSP00000376120
  ensembl transcript: ENST00000392302
  gene symbol: NTRK1
  hgvsc: ENST00000392302.2:c.338+12C>T
  variant of: http://identifiers.org/hgnc/8031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198400
  ensembl transcript: ENST00000530298
  gene symbol: NTRK1
  hgvsc: ENST00000530298.1:n.486+12C>T
  variant of: http://identifiers.org/hgnc/8031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33728
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4038
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
reference allele: C

GenotypeQuality
all individuals: 4553
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4814
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4971
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9520
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1090
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.973438621679828e-5
allele num: 11144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.627344521224087e-5
allele num: 64832
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.65e-1

QD
type: SiteQuality
SIO_000300: 1.518e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

DP
type: SiteQuality
SIO_000300: 1.774626e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.15e-1

GenotypeQuality
all individuals: 2224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5015
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4660
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9512
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2563
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7823
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4825
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.21036068748487e-4
allele num: 8262
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

VQSLOD
type: SiteQuality
SIO_000300: -9.599999999999999e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

DP
type: SiteQuality
SIO_000300: 1.774105e6

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.36e-1

GenotypeQuality
all individuals: 2354
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4923
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4326
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.003814495081309e-4
allele num: 9962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10750
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.481122e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.237e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.829e0

QD
type: SiteQuality
SIO_000300: 1.359e1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

GenotypeQuality
all individuals: 229
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20914
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4869
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6095
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.300595238095238e-5
allele num: 10752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.845e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.408e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.138e0

DP
type: SiteQuality
SIO_000300: 1.48886e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.164e0

QD
type: SiteQuality
SIO_000300: 4.57e0

GenotypeQuality
all individuals: 352
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22129
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
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variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570203812454857e-5
allele num: 63686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.493415e6

QD
type: SiteQuality
SIO_000300: 1.219e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 1.598e0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.48e-1

GenotypeQuality
all individuals: 1070
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6103
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 558
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56416192204217e-5
allele num: 63932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

QD
type: SiteQuality
SIO_000300: 1.579e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.67e0

DP
type: SiteQuality
SIO_000300: 1.537372e6

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

GenotypeQuality
all individuals: 749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6102
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1585
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561329003247564e-5
allele num: 64048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

DP
type: SiteQuality
SIO_000300: 1.552496e6

FS
type: SiteQuality
SIO_000300: 7.02e-1

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.719e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6118
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.127583749109052e-4
allele num: 8418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

DP
type: SiteQuality
SIO_000300: 1.637193e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 7.256e0

QD
type: SiteQuality
SIO_000300: 9.92e0

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.534e0

GenotypeQuality
all individuals: 1892
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5830
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39043
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.433350488934638e-5
allele num: 15544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528397627926881e-5
allele num: 65428
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e0

DP
type: SiteQuality
SIO_000300: 1.648422e6

FS
type: SiteQuality
SIO_000300: 6.870000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.647e0

VQSLOD
type: SiteQuality
SIO_000300: -5.842000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.623e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6122
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5833
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.429214350006429e-5
allele num: 15554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.65063e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.287e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.703e1

VQSLOD
type: SiteQuality
SIO_000300: -2.89e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.85112409275978e-5
allele num: 11298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.703e1

FS
type: SiteQuality
SIO_000300: 6.287e0

VQSLOD
type: SiteQuality
SIO_000300: -2.89e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

DP
type: SiteQuality
SIO_000300: 1.65063e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1621
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177578897786152e-4
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.581777918380259e-4
allele num: 6322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.97e-1

DP
type: SiteQuality
SIO_000300: 1.652925e6

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

QD
type: SiteQuality
SIO_000300: 1.134e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 107
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variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.397134083930399e-5
allele num: 15632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

FS
type: SiteQuality
SIO_000300: 5.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

DP
type: SiteQuality
SIO_000300: 1.666279e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

QD
type: SiteQuality
SIO_000300: 1.441e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 315

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1620
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 3
allele frequency: 3.472222222222222e-3
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15632
num of homozygotes: 0

African
type: Population
allele count: 295
allele frequency: 2.884803442206141e-2
allele num: 10226
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.22051688890245e-4
allele num: 65546
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.059135039717564e-3
allele num: 11330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

DP
type: SiteQuality
SIO_000300: 1.666279e6

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

FS
type: SiteQuality
SIO_000300: 5.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

QD
type: SiteQuality
SIO_000300: 1.441e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5942
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173158141717503e-4
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65662
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.632e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.139e0

FS
type: SiteQuality
SIO_000300: 7.933e0

DP
type: SiteQuality
SIO_000300: 1.660166e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

QD
type: SiteQuality
SIO_000300: 9.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.609423510074877e-5
allele num: 65708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.763718023823472e-5
allele num: 10242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

DP
type: SiteQuality
SIO_000300: 1.661804e6

MQRankSum
type: SiteQuality
SIO_000300: 4.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.332e1

FS
type: SiteQuality
SIO_000300: 1.197e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 133
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GenotypeQuality
all individuals: 575
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.037574800279457e-5
allele num: 65842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.668287e6

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65916
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele count: 1
allele frequency: 8.756567425569177e-5
allele num: 11420
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Other
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ClippingRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.905e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
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SIO_000300: 1.48e-1

FS
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VQSLOD
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.294850812035755e-5
allele num: 15886
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 2
allele frequency: 1.749475157452764e-4
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.032140691328078e-5
allele num: 65960
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10284
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East Asian
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allele count: 15
allele frequency: 1.751109035722624e-3
allele num: 8566
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -5.0e-4

MQRankSum
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DP
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MQ
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514325519413653e-5
allele num: 66036
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African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6468
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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BaseQRankSum
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SIO_000300: -2.308e0

ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.957e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 15932
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 874
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Latino
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allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10290
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66024
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.823e0

QD
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SIO_000300: 8.550000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.676198e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514738404677512e-5
allele num: 66018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6466
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

InbreedingCoeff
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DP
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FS
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6450
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.716284492809949e-5
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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QD
type: SiteQuality
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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MQ
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Other
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European (Finnish)
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FS
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MQRankSum
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VQSLOD
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DP
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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Other
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African
type: Population
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Latino
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South Asian
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.031864900100051e-5
allele num: 65966
num of homozygotes: 0

MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
type: SiteQuality
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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allele frequency: 3.032140691328078e-5
allele num: 65960
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Latino
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Other
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East Asian
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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FS
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.770391159445712e-5
allele num: 11402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65940
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.43e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 6.684e0

DP
type: SiteQuality
SIO_000300: 1.674031e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.852e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 9.91e0

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.158958807177155e-4
allele num: 15828
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

East Asian
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allele count: 4
allele frequency: 4.68055230517201e-4
allele num: 8546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.035822707953856e-5
allele num: 65880
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.672541e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

FS
type: SiteQuality
SIO_000300: 3.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.04e-1

QD
type: SiteQuality
SIO_000300: 9.94e0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.035546246547066e-5
allele num: 65886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.321112515802781e-5
allele num: 15820
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

DP
type: SiteQuality
SIO_000300: 1.672919e6

QD
type: SiteQuality
SIO_000300: 1.017e1

FS
type: SiteQuality
SIO_000300: 5.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.922e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65766
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

East Asian
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allele count: 13
allele frequency: 1.528332941453092e-3
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15738
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.667458e6

QD
type: SiteQuality
SIO_000300: 1.241e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54435384235236e-5
allele num: 64752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.139e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.449e1

DP
type: SiteQuality
SIO_000300: 1.626108e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.634063455775588e-5
allele num: 64738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.182e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.89e-1

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.566416040100251e-5
allele num: 63840
num of homozygotes: 0

East Asian
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.567643831321524e-5
allele num: 63790
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Latino
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8050
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
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Other
type: Population
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South Asian
type: Population
allele count: 0
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Latino
type: Population
allele count: 1
allele frequency: 9.521995810321844e-5
allele num: 10502
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63648
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.22e-1

QD
type: SiteQuality
SIO_000300: 8.92e0

GenotypeQuality
all individuals: 561
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6038
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.201639239290517e-5
allele num: 62468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7790
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.04e-1

DP
type: SiteQuality
SIO_000300: 1.536265e6

GenotypeQuality
all individuals: 744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 596
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variant carriers: 0

GenotypeQuality
all individuals: 5188
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.224662216632808e-5
allele num: 62022
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.391982182628062e-4
allele num: 14368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.055612140965574e-4
allele num: 9818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.306e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

DP
type: SiteQuality
SIO_000300: 1.521286e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 3.294e0

GenotypeQuality
all individuals: 205
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
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GenotypeQuality
all individuals: 283
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1458
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1517
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variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.223103203764585e-5
allele num: 62052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14402
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.257e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.881e1

QD
type: SiteQuality
SIO_000300: 1.845e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.529e0

DP
type: SiteQuality
SIO_000300: 1.519213e6

FS
type: SiteQuality
SIO_000300: 3.153e0

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3090
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1032
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variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13558
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.407261469180974e-4
allele num: 7106
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.631e0

QD
type: SiteQuality
SIO_000300: 1.418e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

DP
type: SiteQuality
SIO_000300: 1.334024e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6028
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57196
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.107419712070875e-4
allele num: 9030
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.177e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.42e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 5.875e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.244e0

VQSLOD
type: SiteQuality
SIO_000300: -5.697e-1

FS
type: SiteQuality
SIO_000300: 1.282e0

DP
type: SiteQuality
SIO_000300: 1.295176e6

GenotypeQuality
all individuals: 1015
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6026
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 823
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variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55694
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.533507130808158e-4
allele num: 13042
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.871e0

VQSLOD
type: SiteQuality
SIO_000300: -8.690000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

DP
type: SiteQuality
SIO_000300: 1.233752e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.527e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12912
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

MQ
type: SiteQuality
SIO_000300: 5.998e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.563e0

FS
type: SiteQuality
SIO_000300: 1.632e0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-3

DP
type: SiteQuality
SIO_000300: 1.209211e6

MQRankSum
type: SiteQuality
SIO_000300: -9.61e-1

QD
type: SiteQuality
SIO_000300: 7.89e0

GenotypeQuality
all individuals: 2547
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1460
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 5.25e1
variant carriers: 1

South Asian
type: Population
allele count: 20
allele frequency: 1.560549313358302e-3
allele num: 12816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.782e0

DP
type: SiteQuality
SIO_000300: 1.19051e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

QD
type: SiteQuality
SIO_000300: 1.187e1

FS
type: SiteQuality
SIO_000300: 1.414e0

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5082
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6015
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 840
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.19030148349019e-4
allele num: 12538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.182e1

FS
type: SiteQuality
SIO_000300: 4.649e0

VQSLOD
type: SiteQuality
SIO_000300: 7.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.788e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

DP
type: SiteQuality
SIO_000300: 1.156672e6

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4062
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.318e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.434e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.66e-1

DP
type: SiteQuality
SIO_000300: 2.939158e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.759e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.022e1

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 2.93956e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33726
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

QD
type: SiteQuality
SIO_000300: 1.022e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.93956e6

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 1.759e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4104
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.144e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 2.939777e6

VQSLOD
type: SiteQuality
SIO_000300: -1.713e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.566e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.573e1

GenotypeQuality
all individuals: 5463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4283
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.002e0

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

DP
type: SiteQuality
SIO_000300: 2.940289e6

FS
type: SiteQuality
SIO_000300: 2.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

GenotypeQuality
all individuals: 4281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33715
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4140
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.940354e6

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

FS
type: SiteQuality
SIO_000300: 2.206e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.175e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.189e1

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.226e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 2.138e0

MQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

QD
type: SiteQuality
SIO_000300: 1.199e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

DP
type: SiteQuality
SIO_000300: 2.940448e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4284
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

DP
type: SiteQuality
SIO_000300: 2.940477e6

QD
type: SiteQuality
SIO_000300: 1.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

FS
type: SiteQuality
SIO_000300: 1.199e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

GenotypeQuality
all individuals: 4056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33711
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495324862143371e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
SIO_000300: 1.152e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 2.940769e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2476
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4057
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
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Other
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African
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East Asian
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BaseQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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ClippingRankSum
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QD
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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Latino
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African
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Other
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European (Non-Finnish)
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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Latino
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East Asian
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African
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South Asian
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European (Finnish)
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DP
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BaseQRankSum
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MQRankSum
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QD
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FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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Latino
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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MQRankSum
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DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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South Asian
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African
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Latino
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East Asian
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European (Finnish)
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FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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Latino
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European (Finnish)
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South Asian
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InbreedingCoeff
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QD
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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DP
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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Other
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African
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South Asian
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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MQ
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QD
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DP
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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FS
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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DP
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VQSLOD
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 5.993407252022775e-5
allele num: 66740
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MQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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DP
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.162e0

FS
type: SiteQuality
SIO_000300: 8.29e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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MQRankSum
type: SiteQuality
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QD
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BaseQRankSum
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 5.38e-1

ReadPosRankSum
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DP
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.949e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele num: 16512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66740
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Other
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African
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 5.953e1

BaseQRankSum
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SIO_000300: -1.438e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

FS
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SIO_000300: 5.672e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.939747e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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African
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 5.66e0

InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
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Latino
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allele frequency: 0.0e0
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African
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South Asian
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Other
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East Asian
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: -4.49e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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Other
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allele frequency: 0.0e0
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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QD
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MQ
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FS
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MQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele num: 6614
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East Asian
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European (Non-Finnish)
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allele frequency: 2.54750344662231e-3
allele num: 66732
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African
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allele frequency: 1.095521814337882e-2
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Latino
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South Asian
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Other
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BaseQRankSum
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VQSLOD
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MQ
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FS
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11576
num of homozygotes: 0

African
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East Asian
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