2-220089823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089823
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089823
    reference: chr 2
allele count: 11
allele frequency: 9.113655570100582e-5
allele num: 120698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.303C>T
  hgvsp: ENST00000409422.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.198C>T
  hgvsp: ENST00000431715.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.486C>T
  hgvsp: ENST00000457841.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.486C>T
  hgvsp: ENST00000409033.3:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.486C>T
  hgvsp: ENST00000436856.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.486C>T
  hgvsp: ENST00000361242.4:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.486C>T
  hgvsp: ENST00000428226.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.486C>T
  hgvsp: ENST00000396761.2:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.486C>T
  hgvsp: ENST00000409618.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser162Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

2-220089824-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089824
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089824
    reference: chr 2
allele count: 1
allele frequency: 8.284866862189524e-6
allele num: 120702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.485C>T
  hgvsp: ENSP00000379983.2:p.Ser162Phe
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.485C>T
  hgvsp: ENSP00000355173.4:p.Ser162Phe
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.485C>T
  hgvsp: ENSP00000409164.1:p.Ser162Phe
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.197C>T
  hgvsp: ENSP00000396404.1:p.Ser66Phe
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.485C>T
  hgvsp: ENSP00000386710.1:p.Ser162Phe
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.485C>T
  hgvsp: ENSP00000401530.1:p.Ser162Phe
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.485C>T
  hgvsp: ENSP00000404750.1:p.Ser162Phe
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.485C>T
  hgvsp: ENSP00000386482.3:p.Ser162Phe
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.302C>T
  hgvsp: ENSP00000386535.1:p.Ser101Phe
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser162Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

2-220089826-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089826
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089826
    reference: chr 2
allele count: 55
allele frequency: 4.556450276700798e-4
allele num: 120708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.483C>T
  hgvsp: ENST00000409033.3:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.195C>T
  hgvsp: ENST00000431715.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.483C>T
  hgvsp: ENST00000436856.1:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.483C>T
  hgvsp: ENST00000361242.4:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.483C>T
  hgvsp: ENST00000457841.1:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.483C>T
  hgvsp: ENST00000428226.1:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.483C>T
  hgvsp: ENST00000396761.2:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.300C>T
  hgvsp: ENST00000409422.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.483C>T
  hgvsp: ENST00000409618.1:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 9.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His161His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

2-220089836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089836
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089836
    reference: chr 2
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.473G>A
  hgvsp: ENSP00000355173.4:p.Trp158Ter
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.473G>A
  hgvsp: ENSP00000409164.1:p.Trp158Ter
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.290G>A
  hgvsp: ENSP00000386535.1:p.Trp97Ter
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.473G>A
  hgvsp: ENSP00000401530.1:p.Trp158Ter
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.473G>A
  hgvsp: ENSP00000386482.3:p.Trp158Ter
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.473G>A
  hgvsp: ENSP00000379983.2:p.Trp158Ter
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.473G>A
  hgvsp: ENSP00000404750.1:p.Trp158Ter
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.473G>A
  hgvsp: ENSP00000386710.1:p.Trp158Ter
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.185G>A
  hgvsp: ENSP00000396404.1:p.Trp62Ter
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3595
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Trp158Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

2-220089838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089838
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089838
    reference: chr 2
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.471C>T
  hgvsp: ENST00000436856.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.471C>T
  hgvsp: ENST00000428226.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.471C>T
  hgvsp: ENST00000396761.2:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.471C>T
  hgvsp: ENST00000457841.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.471C>T
  hgvsp: ENST00000409618.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.471C>T
  hgvsp: ENST00000361242.4:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.471C>T
  hgvsp: ENST00000409033.3:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.183C>T
  hgvsp: ENST00000431715.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.288C>T
  hgvsp: ENST00000409422.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr157Tyr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/2-220089848-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089848
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089848
    reference: chr 2
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.173T>G
  hgvsp: ENSP00000396404.1:p.Ile58Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.278T>G
  hgvsp: ENSP00000386535.1:p.Ile93Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.461T>G
  hgvsp: ENSP00000355173.4:p.Ile154Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.461T>G
  hgvsp: ENSP00000386482.3:p.Ile154Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.461T>G
  hgvsp: ENSP00000404750.1:p.Ile154Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.461T>G
  hgvsp: ENSP00000379983.2:p.Ile154Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.461T>G
  hgvsp: ENSP00000409164.1:p.Ile154Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.461T>G
  hgvsp: ENSP00000386710.1:p.Ile154Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.461T>G
  hgvsp: ENSP00000401530.1:p.Ile154Ser
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile154Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

2-220089860-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089860
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089860
    reference: chr 2
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.266T>C
  hgvsp: ENSP00000386535.1:p.Phe89Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.449T>C
  hgvsp: ENSP00000386482.3:p.Phe150Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.449T>C
  hgvsp: ENSP00000379983.2:p.Phe150Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.449T>C
  hgvsp: ENSP00000386710.1:p.Phe150Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.449T>C
  hgvsp: ENSP00000404750.1:p.Phe150Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.449T>C
  hgvsp: ENSP00000409164.1:p.Phe150Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.449T>C
  hgvsp: ENSP00000401530.1:p.Phe150Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.449T>C
  hgvsp: ENSP00000355173.4:p.Phe150Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.161T>C
  hgvsp: ENSP00000396404.1:p.Phe54Ser
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe150Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

2-220089865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089865
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089865
    reference: chr 2
allele count: 13
allele frequency: 1.076729393055924e-4
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.444C>T
  hgvsp: ENST00000436856.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.444C>T
  hgvsp: ENST00000409618.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.156C>T
  hgvsp: ENST00000431715.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.444C>T
  hgvsp: ENST00000361242.4:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.444C>T
  hgvsp: ENST00000428226.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.444C>T
  hgvsp: ENST00000396761.2:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.444C>T
  hgvsp: ENST00000409033.3:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.261C>T
  hgvsp: ENST00000409422.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.444C>T
  hgvsp: ENST00000457841.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile148Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

2-220089872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089872
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089872
    reference: chr 2
allele count: 4
allele frequency: 3.31301351709515e-5
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.437G>A
  hgvsp: ENSP00000401530.1:p.Arg146Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*142G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.437G>A
  hgvsp: ENSP00000386482.3:p.Arg146Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.437G>A
  hgvsp: ENSP00000379983.2:p.Arg146Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.149G>A
  hgvsp: ENSP00000396404.1:p.Arg50Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.437G>A
  hgvsp: ENSP00000409164.1:p.Arg146Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.254G>A
  hgvsp: ENSP00000386535.1:p.Arg85Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.437G>A
  hgvsp: ENSP00000355173.4:p.Arg146Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.437G>A
  hgvsp: ENSP00000386710.1:p.Arg146Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.437G>A
  hgvsp: ENSP00000404750.1:p.Arg146Gln
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg146Gln
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

2-220089873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089873
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089873
    reference: chr 2
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.436C>T
  hgvsp: ENSP00000409164.1:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.436C>T
  hgvsp: ENSP00000379983.2:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.436C>T
  hgvsp: ENSP00000386710.1:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.436C>T
  hgvsp: ENSP00000386482.3:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.436C>T
  hgvsp: ENSP00000401530.1:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*141C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.436C>T
  hgvsp: ENSP00000404750.1:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.148C>T
  hgvsp: ENSP00000396404.1:p.Arg50Trp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.253C>T
  hgvsp: ENSP00000386535.1:p.Arg85Trp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.436C>T
  hgvsp: ENSP00000355173.4:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg146Trp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

2-220089874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089874
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089874
    reference: chr 2
allele count: 3
allele frequency: 2.484677820109326e-5
allele num: 120740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.435C>T
  hgvsp: ENST00000409033.3:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.435C>T
  hgvsp: ENST00000436856.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.435C>T
  hgvsp: ENST00000361242.4:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.435C>T
  hgvsp: ENST00000409618.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.435C>T
  hgvsp: ENST00000396761.2:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.147C>T
  hgvsp: ENST00000431715.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*140C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.435C>T
  hgvsp: ENST00000457841.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.252C>T
  hgvsp: ENST00000409422.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.435C>T
  hgvsp: ENST00000428226.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His145His
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-220089875-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089875
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089875
    reference: chr 2
allele count: 3
allele frequency: 2.484718978283556e-5
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.434A>T
  hgvsp: ENSP00000401530.1:p.His145Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.434A>T
  hgvsp: ENSP00000386482.3:p.His145Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*139A>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.434A>T
  hgvsp: ENSP00000379983.2:p.His145Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.434A>T
  hgvsp: ENSP00000355173.4:p.His145Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.434A>T
  hgvsp: ENSP00000409164.1:p.His145Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.434A>T
  hgvsp: ENST00000432520.1:c.434A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.434A>T
  hgvsp: ENSP00000404750.1:p.His145Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.146A>T
  hgvsp: ENSP00000396404.1:p.His49Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.251A>T
  hgvsp: ENSP00000386535.1:p.His84Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.434A>T
  hgvsp: ENSP00000386710.1:p.His145Leu
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.His145Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

2-220089888-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089888
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089888
    reference: chr 2
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.421G>A
  hgvsp: ENSP00000409164.1:p.Val141Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.238G>A
  hgvsp: ENSP00000386535.1:p.Val80Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.421G>A
  hgvsp: ENSP00000401530.1:p.Val141Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.421G>A
  hgvsp: ENSP00000406785.1:p.Val141Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.421G>A
  hgvsp: ENSP00000386482.3:p.Val141Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.421G>A
  hgvsp: ENSP00000355173.4:p.Val141Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.421G>A
  hgvsp: ENSP00000386710.1:p.Val141Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.133G>A
  hgvsp: ENSP00000396404.1:p.Val45Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.421G>A
  hgvsp: ENSP00000404750.1:p.Val141Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.421G>A
  hgvsp: ENSP00000379983.2:p.Val141Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*126G>A
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val141Ile
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

2-220089889-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089889
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089889
    reference: chr 2
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.420T>C
  hgvsp: ENST00000409033.3:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.420T>C
  hgvsp: ENST00000432520.1:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.420T>C
  hgvsp: ENST00000396761.2:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.420T>C
  hgvsp: ENST00000436856.1:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.420T>C
  hgvsp: ENST00000361242.4:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.420T>C
  hgvsp: ENST00000428226.1:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.132T>C
  hgvsp: ENST00000431715.1:c.132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.237T>C
  hgvsp: ENST00000409422.1:c.237T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.420T>C
  hgvsp: ENST00000457841.1:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.420T>C
  hgvsp: ENST00000409618.1:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*125T>C
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly140Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

2-220089897-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089897
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089897
    reference: chr 2
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.412A>G
  hgvsp: ENSP00000386482.3:p.Ile138Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.412A>G
  hgvsp: ENSP00000404750.1:p.Ile138Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.412A>G
  hgvsp: ENSP00000379983.2:p.Ile138Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.412A>G
  hgvsp: ENSP00000401530.1:p.Ile138Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*117A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.412A>G
  hgvsp: ENSP00000406785.1:p.Ile138Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.229A>G
  hgvsp: ENSP00000386535.1:p.Ile77Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.412A>G
  hgvsp: ENSP00000409164.1:p.Ile138Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.412A>G
  hgvsp: ENSP00000355173.4:p.Ile138Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.412A>G
  hgvsp: ENSP00000386710.1:p.Ile138Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.124A>G
  hgvsp: ENSP00000396404.1:p.Ile42Val
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile138Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

2-220089899-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089899
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089899
    reference: chr 2
allele count: 68
allele frequency: 5.632122979061754e-4
allele num: 120736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.410T>C
  hgvsp: ENSP00000406785.1:p.Val137Ala
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.227T>C
  hgvsp: ENSP00000386535.1:p.Val76Ala
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.122T>C
  hgvsp: ENSP00000396404.1:p.Val41Ala
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.410T>C
  hgvsp: ENSP00000409164.1:p.Val137Ala
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.410T>C
  hgvsp: ENSP00000379983.2:p.Val137Ala
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.410T>C
  hgvsp: ENSP00000386482.3:p.Val137Ala
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.410T>C
  hgvsp: ENSP00000386710.1:p.Val137Ala
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.410T>C
  hgvsp: ENSP00000401530.1:p.Val137Ala
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.410T>C
  hgvsp: ENSP00000355173.4:p.Val137Ala
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.410T>C
  hgvsp: ENSP00000404750.1:p.Val137Ala
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*115T>C
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Val137Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

2-220089904-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089904
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089904
    reference: chr 2
allele count: 2
allele frequency: 1.656479318855704e-5
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.405C>T
  hgvsp: ENST00000396761.2:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.405C>T
  hgvsp: ENST00000436856.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.405C>T
  hgvsp: ENST00000409033.3:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*110C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.405C>T
  hgvsp: ENST00000432520.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.405C>T
  hgvsp: ENST00000428226.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.405C>T
  hgvsp: ENST00000457841.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.405C>T
  hgvsp: ENST00000361242.4:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.405C>T
  hgvsp: ENST00000409618.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.117C>T
  hgvsp: ENST00000431715.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.222C>T
  hgvsp: ENST00000409422.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile135Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

2-220089908-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089908
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089908
    reference: chr 2
allele count: 12
allele frequency: 9.939040551285449e-5
allele num: 120736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.401C>G
  hgvsp: ENSP00000404750.1:p.Thr134Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.401C>G
  hgvsp: ENSP00000409164.1:p.Thr134Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.401C>G
  hgvsp: ENSP00000406785.1:p.Thr134Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.401C>G
  hgvsp: ENSP00000401530.1:p.Thr134Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.401C>G
  hgvsp: ENSP00000386710.1:p.Thr134Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.218C>G
  hgvsp: ENSP00000386535.1:p.Thr73Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.401C>G
  hgvsp: ENSP00000386482.3:p.Thr134Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.401C>G
  hgvsp: ENSP00000355173.4:p.Thr134Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.113C>G
  hgvsp: ENSP00000396404.1:p.Thr38Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.401C>G
  hgvsp: ENSP00000379983.2:p.Thr134Ser
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*106C>G
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7838
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7099
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Thr134Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

2-220089911-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089911
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089911
    reference: chr 2
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.398T>C
  hgvsp: ENSP00000386482.3:p.Ile133Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.398T>C
  hgvsp: ENSP00000386710.1:p.Ile133Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.398T>C
  hgvsp: ENSP00000409164.1:p.Ile133Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.398T>C
  hgvsp: ENSP00000379983.2:p.Ile133Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.110T>C
  hgvsp: ENSP00000396404.1:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.398T>C
  hgvsp: ENSP00000406785.1:p.Ile133Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.215T>C
  hgvsp: ENSP00000386535.1:p.Ile72Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.398T>C
  hgvsp: ENSP00000404750.1:p.Ile133Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.398T>C
  hgvsp: ENSP00000355173.4:p.Ile133Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*103T>C
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.398T>C
  hgvsp: ENSP00000401530.1:p.Ile133Thr
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile133Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

2-220089922-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089922
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089922
    reference: chr 2
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.387T>C
  hgvsp: ENST00000409033.3:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*92T>C
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*92T>C
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.387T>C
  hgvsp: ENST00000439812.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.387T>C
  hgvsp: ENST00000409618.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.387T>C
  hgvsp: ENST00000457841.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.387T>C
  hgvsp: ENST00000436856.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.204T>C
  hgvsp: ENST00000409422.1:c.204T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.99T>C
  hgvsp: ENST00000431715.1:c.99T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.387T>C
  hgvsp: ENST00000432520.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.387T>C
  hgvsp: ENST00000396761.2:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.387T>C
  hgvsp: ENST00000361242.4:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.387T>C
  hgvsp: ENST00000428226.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn129Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-220089923-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089923
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089923
    reference: chr 2
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.203A>T
  hgvsp: ENSP00000386535.1:p.Asn68Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.386A>T
  hgvsp: ENSP00000355173.4:p.Asn129Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.386A>T
  hgvsp: ENSP00000413569.1:p.Asn129Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.386A>T
  hgvsp: ENSP00000406785.1:p.Asn129Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*91A>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.386A>T
  hgvsp: ENSP00000379983.2:p.Asn129Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.98A>T
  hgvsp: ENSP00000396404.1:p.Asn33Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.386A>T
  hgvsp: ENSP00000409164.1:p.Asn129Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.386A>T
  hgvsp: ENSP00000386482.3:p.Asn129Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.386A>T
  hgvsp: ENSP00000401530.1:p.Asn129Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.386A>T
  hgvsp: ENSP00000386710.1:p.Asn129Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*91A>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.386A>T
  hgvsp: ENSP00000404750.1:p.Asn129Ile
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn129Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

2-220089933-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089933
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089933
    reference: chr 2
allele count: 3
allele frequency: 2.485212982752622e-5
allele num: 120714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.376A>G
  hgvsp: ENSP00000406785.1:p.Ile126Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*81A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.376A>G
  hgvsp: ENSP00000409164.1:p.Ile126Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.376A>G
  hgvsp: ENSP00000386710.1:p.Ile126Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.376A>G
  hgvsp: ENSP00000401530.1:p.Ile126Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.376A>G
  hgvsp: ENSP00000413569.1:p.Ile126Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.376A>G
  hgvsp: ENSP00000379983.2:p.Ile126Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.376A>G
  hgvsp: ENSP00000355173.4:p.Ile126Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.376A>G
  hgvsp: ENSP00000404750.1:p.Ile126Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.193A>G
  hgvsp: ENSP00000386535.1:p.Ile65Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.88A>G
  hgvsp: ENSP00000396404.1:p.Ile30Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.376A>G
  hgvsp: ENSP00000386482.3:p.Ile126Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*81A>G
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7733
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile126Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

2-220089937-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089937
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089937
    reference: chr 2
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*80-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.375-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.375-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.87-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.375-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.375-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.375-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*80-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.375-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.375-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.375-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.192-3C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.375-3C>G
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.375-3C>G
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

2-220089957-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089957
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089957
    reference: chr 2
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*80-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.192-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.375-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.375-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.375-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.375-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.375-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.375-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.375-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*80-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.375-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.375-23C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.87-23C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

2-220089965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089965
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089965
    reference: chr 2
allele count: 1
allele frequency: 8.28953694646617e-6
allele num: 120634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.375-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.375-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.375-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.375-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.192-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.375-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.375-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*80-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.87-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*80-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.375-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.375-31C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.375-31C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7081
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

2-220089968-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089968
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089968
    reference: chr 2
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.375-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.375-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.375-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.375-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*80-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*80-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.192-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.375-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.375-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.375-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.375-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.87-34G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.375-34G>A
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

2-220089972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089972
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089972
    reference: chr 2
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.375-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*80-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.375-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.375-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*80-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.375-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.192-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.87-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.375-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.375-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.375-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.375-38C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.375-38C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

2-220089974-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220089974
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220089974
    reference: chr 2
allele count: 2
allele frequency: 1.658759911090469e-5
allele num: 120572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.375-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.375-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.375-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.375-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.375-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.87-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*80-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.375-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.375-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.375-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.375-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*80-40C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.192-40C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

2-220090092-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090092
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090092
    reference: chr 2
allele count: 1
allele frequency: 8.407317729351627e-6
allele num: 118944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.374+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*79+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.374+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.374+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.556C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.86+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.191+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.374+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.374+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.374+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*79+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.374+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.374+41C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.374+41C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

2-220090101-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090101
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090101
    reference: chr 2
allele count: 1
allele frequency: 8.399408681628814e-6
allele num: 119056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.191+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.374+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*79+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*79+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.374+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.374+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.374+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.374+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.547C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.374+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.374+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.374+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.374+32C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.86+32C>G
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-220090105-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090105
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090105
    reference: chr 2
allele count: 2
allele frequency: 1.678415575696542e-5
allele num: 119160
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.543A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.191+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.374+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.374+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*79+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.374+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*79+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.86+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.374+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.374+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.374+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.374+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.374+28A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.374+28A>G
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-220090106-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090106
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090106
    reference: chr 2
allele count: 2
allele frequency: 1.678105754224631e-5
allele num: 119182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.542C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.191+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.374+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.374+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.374+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.374+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.374+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*79+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*79+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.374+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.374+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.374+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.374+27C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.86+27C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

2-220090106-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090106
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090106
    reference: chr 2
allele count: 1
allele frequency: 8.390528771123156e-6
allele num: 119182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*79+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.374+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.542C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.374+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.374+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.374+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.374+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.374+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*79+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.191+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.374+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.374+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.374+27C>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.86+27C>A
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

2-220090108-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090108
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090108
    reference: chr 2
allele count: 1
allele frequency: 8.387854386847844e-6
allele num: 119220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.374+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.540A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.374+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.191+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.374+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.374+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.374+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*79+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.374+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.86+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.374+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.374+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.374+25A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*79+25A>G
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

2-220090114-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090114
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090112
    reference: chr 2
allele count: 1
allele frequency: 8.376752835530836e-6
allele num: 119378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*79+17_*79+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.532_533delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.374+17_374+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*79+17_*79+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.374+17_374+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.374+17_374+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.374+17_374+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.374+17_374+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.86+17_86+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.374+17_374+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.374+17_374+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.191+17_191+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.374+17_374+18delAA
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.374+17_374+18delAA
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CTT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum

2-220090126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090126
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090126
    reference: chr 2
allele count: 2
allele frequency: 1.669449081803005e-5
allele num: 119800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.191+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.374+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.374+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.374+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.374+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.86+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.522G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*79+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.374+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.374+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.374+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*79+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.374+7G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.374+7G>A
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.374+7G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

2-220090140-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090140
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090140
    reference: chr 2
allele count: 2
allele frequency: 1.661709234118214e-5
allele num: 120358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.367A>G
  hgvsp: ENSP00000406785.1:p.Ser123Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.508A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.367A>G
  hgvsp: ENSP00000355173.4:p.Ser123Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.367A>G
  hgvsp: ENSP00000386710.1:p.Ser123Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.184A>G
  hgvsp: ENSP00000386535.1:p.Ser62Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.79A>G
  hgvsp: ENSP00000396404.1:p.Ser27Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.576A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.367A>G
  hgvsp: ENSP00000413569.1:p.Ser123Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.367A>G
  hgvsp: ENSP00000379983.2:p.Ser123Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*72A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.367A>G
  hgvsp: ENSP00000386482.3:p.Ser123Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.367A>G
  hgvsp: ENSP00000401530.1:p.Ser123Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.367A>G
  hgvsp: ENSP00000404750.1:p.Ser123Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.367A>G
  hgvsp: ENSP00000409164.1:p.Ser123Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*72A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*72A>G
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser123Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

2-220090147-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090147
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090147
    reference: chr 2
allele count: 2343
allele frequency: 1.943753111000498e-2
allele num: 120540
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*65A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.501A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.360A>G
  hgvsp: ENST00000361242.4:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.360A>G
  hgvsp: ENST00000396761.2:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.177A>G
  hgvsp: ENST00000409422.1:c.177A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.360A>G
  hgvsp: ENST00000439812.1:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.72A>G
  hgvsp: ENST00000431715.1:c.72A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.360A>G
  hgvsp: ENST00000409033.3:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.360A>G
  hgvsp: ENST00000428226.1:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.569A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.360A>G
  hgvsp: ENST00000409618.1:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*65A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.360A>G
  hgvsp: ENST00000436856.1:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.360A>G
  hgvsp: ENST00000457841.1:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.360A>G
  hgvsp: ENST00000432520.1:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*65A>G
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 3.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 8105
  bin: 2.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
hgvs: p.Gln120Gln
num of homozygotes: 47
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

2-220090152-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090152
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090152
    reference: chr 2
allele count: 1
allele frequency: 8.291873963515755e-6
allele num: 120600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.355G>A
  hgvsp: ENSP00000409164.1:p.Ala119Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.355G>A
  hgvsp: ENSP00000386482.3:p.Ala119Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.355G>A
  hgvsp: ENSP00000355173.4:p.Ala119Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*60G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.355G>A
  hgvsp: ENSP00000401530.1:p.Ala119Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*60G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.355G>A
  hgvsp: ENSP00000413569.1:p.Ala119Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.496G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.67G>A
  hgvsp: ENSP00000396404.1:p.Ala23Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.355G>A
  hgvsp: ENSP00000386710.1:p.Ala119Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.355G>A
  hgvsp: ENSP00000404750.1:p.Ala119Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.355G>A
  hgvsp: ENSP00000379983.2:p.Ala119Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*60G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.355G>A
  hgvsp: ENSP00000406785.1:p.Ala119Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.172G>A
  hgvsp: ENSP00000386535.1:p.Ala58Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.564G>A
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala119Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

2-220090154-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090154
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090154
    reference: chr 2
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*58C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.353C>T
  hgvsp: ENSP00000386482.3:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*58C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.65C>T
  hgvsp: ENSP00000396404.1:p.Pro22Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.353C>T
  hgvsp: ENSP00000409164.1:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.562C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.353C>T
  hgvsp: ENSP00000413569.1:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.353C>T
  hgvsp: ENSP00000404750.1:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.170C>T
  hgvsp: ENSP00000386535.1:p.Pro57Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.353C>T
  hgvsp: ENSP00000386710.1:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.353C>T
  hgvsp: ENSP00000379983.2:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.353C>T
  hgvsp: ENSP00000355173.4:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.353C>T
  hgvsp: ENSP00000406785.1:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*58C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.494C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.353C>T
  hgvsp: ENSP00000401530.1:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro118Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-220090158-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090158
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090158
    reference: chr 2
allele count: 2
allele frequency: 1.657495193263939e-5
allele num: 120664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.349T>G
  hgvsp: ENSP00000409164.1:p.Leu117Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*54T>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.61T>G
  hgvsp: ENSP00000396404.1:p.Leu21Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.349T>G
  hgvsp: ENSP00000355173.4:p.Leu117Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*54T>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.349T>G
  hgvsp: ENSP00000386710.1:p.Leu117Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.349T>G
  hgvsp: ENSP00000413569.1:p.Leu117Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*54T>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.166T>G
  hgvsp: ENSP00000386535.1:p.Leu56Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.349T>G
  hgvsp: ENSP00000379983.2:p.Leu117Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.349T>G
  hgvsp: ENSP00000386482.3:p.Leu117Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.349T>G
  hgvsp: ENSP00000404750.1:p.Leu117Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.558T>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.349T>G
  hgvsp: ENSP00000401530.1:p.Leu117Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.349T>G
  hgvsp: ENSP00000406785.1:p.Leu117Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.490T>G
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu117Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

2-220090160-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090160
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090158
    reference: chr 2
allele count: 1
allele frequency: 8.285965232089886e-6
allele num: 120686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.345_346delCT
  hgvsp: ENSP00000413569.1:p.Leu117AlafsTer6
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.345_346delCT
  hgvsp: ENSP00000409164.1:p.Leu117AlafsTer6
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.345_346delCT
  hgvsp: ENSP00000386482.3:p.Leu117AlafsTer6
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.345_346delCT
  hgvsp: ENSP00000386710.1:p.Leu117AlafsTer6
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.345_346delCT
  hgvsp: ENSP00000355173.4:p.Leu117AlafsTer6
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.486_487delCT
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.345_346delCT
  hgvsp: ENSP00000404750.1:p.Leu117AlafsTer6
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.57_58delCT
  hgvsp: ENSP00000396404.1:p.Leu21AlafsTer6
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.345_346delCT
  hgvsp: ENSP00000379983.2:p.Leu117AlafsTer6
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.554_555delCT
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*50_*51delCT
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.345_346delCT
  hgvsp: ENSP00000406785.1:p.Leu117AlafsTer6
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*50_*51delCT
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.345_346delCT
  hgvsp: ENSP00000401530.1:p.Leu117AlafsTer6
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*50_*51delCT
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.162_163delCT
  hgvsp: ENSP00000386535.1:p.Leu56AlafsTer6
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu117AlafsTer6
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: AAG
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

2-220090164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090164
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090164
    reference: chr 2
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.343G>A
  hgvsp: ENSP00000409164.1:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.160G>A
  hgvsp: ENSP00000386535.1:p.Ala54Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.343G>A
  hgvsp: ENSP00000355173.4:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.343G>A
  hgvsp: ENSP00000413569.1:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.343G>A
  hgvsp: ENSP00000386710.1:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.343G>A
  hgvsp: ENSP00000401530.1:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.343G>A
  hgvsp: ENSP00000379983.2:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.55G>A
  hgvsp: ENSP00000396404.1:p.Ala19Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.552G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.343G>A
  hgvsp: ENSP00000404750.1:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.343G>A
  hgvsp: ENSP00000386482.3:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.343G>A
  hgvsp: ENSP00000406785.1:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.484G>A
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala115Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

2-220090165-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090165
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090165
    reference: chr 2
allele count: 10
allele frequency: 8.283906027370025e-5
allele num: 120716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.159C>T
  hgvsp: ENST00000409422.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.54C>T
  hgvsp: ENST00000431715.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*47C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.342C>T
  hgvsp: ENST00000428226.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.342C>T
  hgvsp: ENST00000361242.4:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.342C>T
  hgvsp: ENST00000436856.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.342C>T
  hgvsp: ENST00000457841.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*47C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.342C>T
  hgvsp: ENST00000396761.2:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*47C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.342C>T
  hgvsp: ENST00000409033.3:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.342C>T
  hgvsp: ENST00000409618.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.483C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.342C>T
  hgvsp: ENST00000432520.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.342C>T
  hgvsp: ENST00000439812.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.551C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp114Asp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/2-220090167-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090167
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090167
    reference: chr 2
allele count: 1
allele frequency: 8.283219853221344e-6
allele num: 120726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.340G>T
  hgvsp: ENSP00000404750.1:p.Asp114Tyr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*45G>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.340G>T
  hgvsp: ENSP00000386482.3:p.Asp114Tyr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.549G>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*45G>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.340G>T
  hgvsp: ENSP00000386710.1:p.Asp114Tyr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.52G>T
  hgvsp: ENSP00000396404.1:p.Asp18Tyr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*45G>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.340G>T
  hgvsp: ENSP00000406785.1:p.Asp114Tyr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.340G>T
  hgvsp: ENSP00000355173.4:p.Asp114Tyr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.340G>T
  hgvsp: ENSP00000413569.1:p.Asp114Tyr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.157G>T
  hgvsp: ENSP00000386535.1:p.Asp53Tyr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.340G>T
  hgvsp: ENSP00000379983.2:p.Asp114Tyr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.481G>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.340G>T
  hgvsp: ENSP00000409164.1:p.Asp114Tyr
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.340G>T
  hgvsp: ENSP00000401530.1:p.Asp114Tyr
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp114Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

2-220090173-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090173
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090173
    reference: chr 2
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.334C>T
  hgvsp: ENST00000409618.1:c.334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.46C>T
  hgvsp: ENST00000431715.1:c.46C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.334C>T
  hgvsp: ENST00000361242.4:c.334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.334C>T
  hgvsp: ENST00000396761.2:c.334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.334C>T
  hgvsp: ENST00000428226.1:c.334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.334C>T
  hgvsp: ENST00000436856.1:c.334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.543C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.334C>T
  hgvsp: ENST00000439812.1:c.334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.475C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.334C>T
  hgvsp: ENST00000409033.3:c.334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.334C>T
  hgvsp: ENST00000457841.1:c.334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.151C>T
  hgvsp: ENST00000409422.1:c.151C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.334C>T
  hgvsp: ENST00000432520.1:c.334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu112Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-220090183-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090183
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090183
    reference: chr 2
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.465C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.324C>G
  hgvsp: ENST00000436856.1:c.324C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.324C>G
  hgvsp: ENST00000396761.2:c.324C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.324C>G
  hgvsp: ENST00000409618.1:c.324C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.324C>G
  hgvsp: ENST00000428226.1:c.324C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.36C>G
  hgvsp: ENST00000431715.1:c.36C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.324C>G
  hgvsp: ENST00000439812.1:c.324C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.324C>G
  hgvsp: ENST00000432520.1:c.324C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.324C>G
  hgvsp: ENST00000361242.4:c.324C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*29C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.141C>G
  hgvsp: ENST00000409422.1:c.141C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.324C>G
  hgvsp: ENST00000457841.1:c.324C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.324C>G
  hgvsp: ENST00000409033.3:c.324C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*29C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*29C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.533C>G
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val108Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

2-220090185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090185
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090185
    reference: chr 2
allele count: 2
allele frequency: 1.656314699792961e-5
allele num: 120750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*27G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*27G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*27G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.322G>A
  hgvsp: ENSP00000404750.1:p.Val108Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.322G>A
  hgvsp: ENSP00000386710.1:p.Val108Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.322G>A
  hgvsp: ENSP00000413569.1:p.Val108Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.531G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.322G>A
  hgvsp: ENSP00000409164.1:p.Val108Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.322G>A
  hgvsp: ENSP00000386482.3:p.Val108Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.322G>A
  hgvsp: ENSP00000406785.1:p.Val108Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.322G>A
  hgvsp: ENSP00000355173.4:p.Val108Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.322G>A
  hgvsp: ENSP00000379983.2:p.Val108Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.34G>A
  hgvsp: ENSP00000396404.1:p.Val12Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.139G>A
  hgvsp: ENSP00000386535.1:p.Val47Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.463G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.322G>A
  hgvsp: ENSP00000401530.1:p.Val108Ile
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val108Ile
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

2-220090186-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090186
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090186
    reference: chr 2
allele count: 19
allele frequency: 1.573498964803313e-4
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.321C>T
  hgvsp: ENST00000432520.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.321C>T
  hgvsp: ENST00000436856.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.321C>T
  hgvsp: ENST00000428226.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.33C>T
  hgvsp: ENST00000431715.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*26C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.530C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.321C>T
  hgvsp: ENST00000439812.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.462C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.321C>T
  hgvsp: ENST00000361242.4:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*26C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.321C>T
  hgvsp: ENST00000409618.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.321C>T
  hgvsp: ENST00000409033.3:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.138C>T
  hgvsp: ENST00000409422.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.321C>T
  hgvsp: ENST00000457841.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.321C>T
  hgvsp: ENST00000396761.2:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*26C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25056
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro107Pro
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

2-220090194-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090194
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090194
    reference: chr 2
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.313A>C
  hgvsp: ENSP00000401530.1:p.Thr105Pro
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.130A>C
  hgvsp: ENSP00000386535.1:p.Thr44Pro
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.313A>C
  hgvsp: ENSP00000386482.3:p.Thr105Pro
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.313A>C
  hgvsp: ENSP00000404750.1:p.Thr105Pro
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.25A>C
  hgvsp: ENSP00000396404.1:p.Thr9Pro
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.313A>C
  hgvsp: ENSP00000406785.1:p.Thr105Pro
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*18A>C
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.313A>C
  hgvsp: ENSP00000355173.4:p.Thr105Pro
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.313A>C
  hgvsp: ENSP00000413569.1:p.Thr105Pro
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.454A>C
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.313A>C
  hgvsp: ENSP00000379983.2:p.Thr105Pro
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.313A>C
  hgvsp: ENSP00000409164.1:p.Thr105Pro
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*18A>C
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*18A>C
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.522A>C
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.313A>C
  hgvsp: ENSP00000386710.1:p.Thr105Pro
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr105Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum

2-220090198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090198
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090198
    reference: chr 2
allele count: 3
allele frequency: 2.484389751064147e-5
allele num: 120754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.309C>T
  hgvsp: ENST00000436856.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.21C>T
  hgvsp: ENST00000431715.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.309C>T
  hgvsp: ENST00000409618.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.518C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.309C>T
  hgvsp: ENST00000439812.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.450C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.309C>T
  hgvsp: ENST00000428226.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.309C>T
  hgvsp: ENST00000409033.3:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.309C>T
  hgvsp: ENST00000396761.2:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.309C>T
  hgvsp: ENST00000457841.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.309C>T
  hgvsp: ENST00000432520.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.309C>T
  hgvsp: ENST00000361242.4:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.126C>T
  hgvsp: ENST00000409422.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His103His
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

2-220090198-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090198
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090198
    reference: chr 2
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.309C>G
  hgvsp: ENSP00000413569.1:p.His103Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.309C>G
  hgvsp: ENSP00000379983.2:p.His103Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.450C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.21C>G
  hgvsp: ENSP00000396404.1:p.His7Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.518C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.309C>G
  hgvsp: ENSP00000409164.1:p.His103Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.309C>G
  hgvsp: ENSP00000406785.1:p.His103Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.309C>G
  hgvsp: ENSP00000386482.3:p.His103Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.309C>G
  hgvsp: ENSP00000386710.1:p.His103Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*14C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.309C>G
  hgvsp: ENSP00000355173.4:p.His103Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.309C>G
  hgvsp: ENSP00000401530.1:p.His103Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.126C>G
  hgvsp: ENSP00000386535.1:p.His42Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*14C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.309C>G
  hgvsp: ENSP00000404750.1:p.His103Gln
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*14C>G
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25072
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His103Gln
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

2-220090200-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090200
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090200
    reference: chr 2
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.307C>G
  hgvsp: ENSP00000413569.1:p.His103Asp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.516C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.307C>G
  hgvsp: ENSP00000406785.1:p.His103Asp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.307C>G
  hgvsp: ENSP00000409164.1:p.His103Asp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.307C>G
  hgvsp: ENSP00000379983.2:p.His103Asp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.19C>G
  hgvsp: ENSP00000396404.1:p.His7Asp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*12C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.124C>G
  hgvsp: ENSP00000386535.1:p.His42Asp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.307C>G
  hgvsp: ENSP00000386710.1:p.His103Asp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*12C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.307C>G
  hgvsp: ENSP00000386482.3:p.His103Asp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.448C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*12C>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.307C>G
  hgvsp: ENSP00000401530.1:p.His103Asp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.307C>G
  hgvsp: ENSP00000404750.1:p.His103Asp
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.307C>G
  hgvsp: ENSP00000355173.4:p.His103Asp
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.His103Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS

2-220090206-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090206
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090206
    reference: chr 2
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.118A>T
  hgvsp: ENSP00000386535.1:p.Ser40Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.301A>T
  hgvsp: ENSP00000413569.1:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.301A>T
  hgvsp: ENSP00000401530.1:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.13A>T
  hgvsp: ENSP00000396404.1:p.Ser5Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.510A>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.301A>T
  hgvsp: ENSP00000406785.1:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*6A>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.301A>T
  hgvsp: ENSP00000386482.3:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.301A>T
  hgvsp: ENSP00000409164.1:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.301A>T
  hgvsp: ENSP00000379983.2:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.301A>T
  hgvsp: ENSP00000355173.4:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.301A>T
  hgvsp: ENSP00000386710.1:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.301A>T
  hgvsp: ENSP00000404750.1:p.Ser101Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*6A>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.442A>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*6A>T
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser101Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-220090206-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090206
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090206
    reference: chr 2
allele count: 3
allele frequency: 2.484348603796085e-5
allele num: 120756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.13A>G
  hgvsp: ENSP00000396404.1:p.Ser5Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*6A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.301A>G
  hgvsp: ENSP00000386482.3:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.301A>G
  hgvsp: ENSP00000355173.4:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*6A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.118A>G
  hgvsp: ENSP00000386535.1:p.Ser40Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.301A>G
  hgvsp: ENSP00000409164.1:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.510A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.301A>G
  hgvsp: ENSP00000413569.1:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.301A>G
  hgvsp: ENSP00000404750.1:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.301A>G
  hgvsp: ENSP00000386710.1:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.301A>G
  hgvsp: ENSP00000406785.1:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.442A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.301A>G
  hgvsp: ENSP00000379983.2:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*6A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.301A>G
  hgvsp: ENSP00000401530.1:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8341
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser101Gly
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

2-220090210-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090210
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090210
    reference: chr 2
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.114C>T
  hgvsp: ENST00000409422.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.297C>T
  hgvsp: ENST00000396761.2:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.297C>T
  hgvsp: ENST00000409033.3:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.*2C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.297C>T
  hgvsp: ENST00000432520.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.297C>T
  hgvsp: ENST00000409618.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.297C>T
  hgvsp: ENST00000428226.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.9C>T
  hgvsp: ENST00000431715.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.297C>T
  hgvsp: ENST00000439812.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.297C>T
  hgvsp: ENST00000436856.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.*2C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.297C>T
  hgvsp: ENST00000457841.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.438C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.506C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.*2C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.297C>T
  hgvsp: ENST00000361242.4:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn99Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

2-220090213-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090213
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090213
    reference: chr 2
allele count: 4
allele frequency: 3.312464805061446e-5
allele num: 120756
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.294G>A
  hgvsp: ENST00000409618.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.111G>A
  hgvsp: ENST00000409422.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.296G>A
  hgvsp: ENST00000455079.1:c.296G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.296G>A
  hgvsp: ENST00000456708.1:c.296G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.294G>A
  hgvsp: ENST00000436856.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.294G>A
  hgvsp: ENST00000439812.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.294G>A
  hgvsp: ENST00000396761.2:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.296G>A
  hgvsp: ENST00000412355.1:c.296G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.294G>A
  hgvsp: ENST00000409033.3:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.294G>A
  hgvsp: ENST00000432520.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.6G>A
  hgvsp: ENST00000431715.1:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.294G>A
  hgvsp: ENST00000428226.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.294G>A
  hgvsp: ENST00000361242.4:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.294G>A
  hgvsp: ENST00000457841.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.503G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.435G>A
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter99Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

2-220090216-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090216
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090216
    reference: chr 2
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.293G>A
  hgvsp: ENSP00000398425.1:p.Trp98Ter
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.293G>A
  hgvsp: ENSP00000393708.1:p.Trp98Ter
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.293G>A
  hgvsp: ENSP00000390704.1:p.Trp98Ter
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.291G>A
  hgvsp: ENSP00000406785.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.291G>A
  hgvsp: ENSP00000355173.4:p.Met97Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.291G>A
  hgvsp: ENSP00000404750.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.432G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.500G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.291G>A
  hgvsp: ENSP00000409164.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.3G>A
  hgvsp: ENSP00000396404.1:p.Met1?
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.291G>A
  hgvsp: ENSP00000413569.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.291G>A
  hgvsp: ENSP00000379983.2:p.Met97Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.291G>A
  hgvsp: ENSP00000386482.3:p.Met97Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000416435
  ensembl transcript: ENST00000443140
  gene symbol: ATG9A
  hgvsc: ENST00000443140.1:c.291G>A
  hgvsp: ENSP00000416435.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.291G>A
  hgvsp: ENSP00000401530.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.291G>A
  hgvsp: ENSP00000386710.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.108G>A
  hgvsp: ENSP00000386535.1:p.Met36Ile
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp98Ter
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

2-220090231-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090231
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090231
    reference: chr 2
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.276A>G
  hgvsp: ENST00000409618.1:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.276A>G
  hgvsp: ENST00000409033.3:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.485A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.278A>G
  hgvsp: ENSP00000398425.1:p.Tyr93Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.276A>G
  hgvsp: ENST00000361242.4:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000416435
  ensembl transcript: ENST00000443140
  gene symbol: ATG9A
  hgvsc: ENST00000443140.1:c.276A>G
  hgvsp: ENST00000443140.1:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.417A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000394345
  ensembl transcript: ENST00000434939
  gene symbol: ATG9A
  hgvsc: ENST00000434939.1:c.276A>G
  hgvsp: ENST00000434939.1:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.93A>G
  hgvsp: ENST00000409422.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.276A>G
  hgvsp: ENST00000396761.2:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.-13A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.276A>G
  hgvsp: ENST00000457841.1:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.278A>G
  hgvsp: ENSP00000390704.1:p.Tyr93Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.276A>G
  hgvsp: ENST00000428226.1:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.278A>G
  hgvsp: ENSP00000393708.1:p.Tyr93Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.276A>G
  hgvsp: ENST00000436856.1:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.276A>G
  hgvsp: ENST00000432520.1:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.276A>G
  hgvsp: ENST00000439812.1:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr93Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

2-220090237-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090237
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090237
    reference: chr 2
allele count: 3
allele frequency: 2.484801298722812e-5
allele num: 120734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.411C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.270C>T
  hgvsp: ENST00000409618.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.87C>T
  hgvsp: ENST00000409422.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.272C>T
  hgvsp: ENSP00000390704.1:p.Thr91Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.272C>T
  hgvsp: ENSP00000398425.1:p.Thr91Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.270C>T
  hgvsp: ENST00000432520.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.272C>T
  hgvsp: ENSP00000393708.1:p.Thr91Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.270C>T
  hgvsp: ENST00000439812.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.270C>T
  hgvsp: ENST00000457841.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.270C>T
  hgvsp: ENST00000361242.4:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000394345
  ensembl transcript: ENST00000434939
  gene symbol: ATG9A
  hgvsc: ENST00000434939.1:c.270C>T
  hgvsp: ENST00000434939.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.270C>T
  hgvsp: ENST00000396761.2:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.270C>T
  hgvsp: ENST00000436856.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.479C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.270C>T
  hgvsp: ENST00000409033.3:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.270C>T
  hgvsp: ENST00000428226.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000416435
  ensembl transcript: ENST00000443140
  gene symbol: ATG9A
  hgvsc: ENST00000443140.1:c.270C>T
  hgvsp: ENST00000443140.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr91Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-220090241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090241
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090241
    reference: chr 2
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.268A>G
  hgvsp: ENSP00000390704.1:p.Met90Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.266A>G
  hgvsp: ENSP00000386710.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.266A>G
  hgvsp: ENSP00000409164.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000416435
  ensembl transcript: ENST00000443140
  gene symbol: ATG9A
  hgvsc: ENST00000443140.1:c.266A>G
  hgvsp: ENSP00000416435.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.266A>G
  hgvsp: ENSP00000404750.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.266A>G
  hgvsp: ENSP00000406785.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.268A>G
  hgvsp: ENSP00000393708.1:p.Met90Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.266A>G
  hgvsp: ENSP00000386482.3:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000394345
  ensembl transcript: ENST00000434939
  gene symbol: ATG9A
  hgvsc: ENST00000434939.1:c.266A>G
  hgvsp: ENSP00000394345.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.83A>G
  hgvsp: ENSP00000386535.1:p.Tyr28Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.266A>G
  hgvsp: ENSP00000355173.4:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.266A>G
  hgvsp: ENSP00000413569.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.407A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.266A>G
  hgvsp: ENSP00000401530.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.475A>G
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.268A>G
  hgvsp: ENSP00000398425.1:p.Met90Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.266A>G
  hgvsp: ENSP00000379983.2:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.-23A>G
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr89Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

2-220090243-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090243
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090243
    reference: chr 2
allele count: 2
allele frequency: 1.656534199148542e-5
allele num: 120734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.264C>T
  hgvsp: ENST00000396761.2:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.266C>T
  hgvsp: ENSP00000398425.1:p.Thr89Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.264C>T
  hgvsp: ENST00000432520.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.266C>T
  hgvsp: ENSP00000393708.1:p.Thr89Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.264C>T
  hgvsp: ENST00000428226.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.264C>T
  hgvsp: ENST00000409618.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.405C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.81C>T
  hgvsp: ENST00000409422.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.264C>T
  hgvsp: ENST00000436856.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.264C>T
  hgvsp: ENST00000409033.3:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.264C>T
  hgvsp: ENST00000457841.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.264C>T
  hgvsp: ENST00000439812.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.264C>T
  hgvsp: ENST00000361242.4:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.266C>T
  hgvsp: ENSP00000390704.1:p.Thr89Ile
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000394345
  ensembl transcript: ENST00000434939
  gene symbol: ATG9A
  hgvsc: ENST00000434939.1:c.264C>T
  hgvsp: ENST00000434939.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000416435
  ensembl transcript: ENST00000443140
  gene symbol: ATG9A
  hgvsc: ENST00000443140.1:c.264C>T
  hgvsp: ENST00000443140.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.473C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr89Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

2-220090248-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090248
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090248
    reference: chr 2
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000394345
  ensembl transcript: ENST00000434939
  gene symbol: ATG9A
  hgvsc: ENST00000434939.1:c.259G>A
  hgvsp: ENSP00000394345.1:p.Val87Met
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.259G>A
  hgvsp: ENSP00000355173.4:p.Val87Met
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.261G>A
  hgvsp: ENST00000455079.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.259G>A
  hgvsp: ENSP00000404750.1:p.Val87Met
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.259G>A
  hgvsp: ENSP00000401530.1:p.Val87Met
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.261G>A
  hgvsp: ENST00000412355.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.259G>A
  hgvsp: ENSP00000409164.1:p.Val87Met
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.259G>A
  hgvsp: ENSP00000386482.3:p.Val87Met
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.468G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.259G>A
  hgvsp: ENSP00000406785.1:p.Val87Met
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.400G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.261G>A
  hgvsp: ENST00000456708.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.76G>A
  hgvsp: ENSP00000386535.1:p.Val26Met
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.259G>A
  hgvsp: ENSP00000386710.1:p.Val87Met
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.-30G>A
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000416435
  ensembl transcript: ENST00000443140
  gene symbol: ATG9A
  hgvsc: ENST00000443140.1:c.259G>A
  hgvsp: ENSP00000416435.1:p.Val87Met
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.259G>A
  hgvsp: ENSP00000379983.2:p.Val87Met
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.259G>A
  hgvsp: ENSP00000413569.1:p.Val87Met
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val87Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

2-220090249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090249
    reference: chr 2
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.260C>T
  hgvsp: ENSP00000398425.1:p.Ala87Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.260C>T
  hgvsp: ENSP00000390704.1:p.Ala87Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.258C>T
  hgvsp: ENST00000396761.2:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000394345
  ensembl transcript: ENST00000434939
  gene symbol: ATG9A
  hgvsc: ENST00000434939.1:c.258C>T
  hgvsp: ENST00000434939.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.258C>T
  hgvsp: ENST00000409618.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.258C>T
  hgvsp: ENST00000436856.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.399C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.258C>T
  hgvsp: ENST00000428226.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.258C>T
  hgvsp: ENST00000439812.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.260C>T
  hgvsp: ENSP00000393708.1:p.Ala87Val
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.75C>T
  hgvsp: ENST00000409422.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.258C>T
  hgvsp: ENST00000457841.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.467C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.258C>T
  hgvsp: ENST00000409033.3:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.258C>T
  hgvsp: ENST00000432520.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.258C>T
  hgvsp: ENST00000361242.4:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000416435
  ensembl transcript: ENST00000443140
  gene symbol: ATG9A
  hgvsc: ENST00000443140.1:c.258C>T
  hgvsp: ENST00000443140.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.-31C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala87Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS

2-220090255-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090255
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090255
    reference: chr 2
allele count: 3
allele frequency: 2.485460058656858e-5
allele num: 120702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000413569
  ensembl transcript: ENST00000439812
  gene symbol: ATG9A
  hgvsc: ENST00000439812.1:c.252C>T
  hgvsp: ENST00000439812.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000393708
  ensembl transcript: ENST00000412355
  gene symbol: ATG9A
  hgvsc: ENST00000412355.1:c.254C>T
  hgvsp: ENSP00000393708.1:p.Ser85Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000355173
  ensembl transcript: ENST00000361242
  gene symbol: ATG9A
  hgvsc: ENST00000361242.4:c.252C>T
  hgvsp: ENST00000361242.4:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000394345
  ensembl transcript: ENST00000434939
  gene symbol: ATG9A
  hgvsc: ENST00000434939.1:c.252C>T
  hgvsp: ENST00000434939.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000390704
  ensembl transcript: ENST00000456708
  gene symbol: ATG9A
  hgvsc: ENST00000456708.1:c.254C>T
  hgvsp: ENSP00000390704.1:p.Ser85Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000379983
  ensembl transcript: ENST00000396761
  gene symbol: ATG9A
  hgvsc: ENST00000396761.2:c.252C>T
  hgvsp: ENST00000396761.2:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000406785
  ensembl transcript: ENST00000432520
  gene symbol: ATG9A
  hgvsc: ENST00000432520.1:c.252C>T
  hgvsp: ENST00000432520.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000409164
  ensembl transcript: ENST00000428226
  gene symbol: ATG9A
  hgvsc: ENST00000428226.1:c.252C>T
  hgvsp: ENST00000428226.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000466217
  gene symbol: ATG9A
  hgvsc: ENST00000466217.1:n.393C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000401530
  ensembl transcript: ENST00000436856
  gene symbol: ATG9A
  hgvsc: ENST00000436856.1:c.252C>T
  hgvsp: ENST00000436856.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386482
  ensembl transcript: ENST00000409033
  gene symbol: ATG9A
  hgvsc: ENST00000409033.3:c.252C>T
  hgvsp: ENST00000409033.3:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.254C>T
  hgvsp: ENSP00000398425.1:p.Ser85Leu
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386710
  ensembl transcript: ENST00000409618
  gene symbol: ATG9A
  hgvsc: ENST00000409618.1:c.252C>T
  hgvsp: ENST00000409618.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000386535
  ensembl transcript: ENST00000409422
  gene symbol: ATG9A
  hgvsc: ENST00000409422.1:c.69C>T
  hgvsp: ENST00000409422.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000396404
  ensembl transcript: ENST00000431715
  gene symbol: ATG9A
  hgvsc: ENST00000431715.1:c.-37C>T
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000404750
  ensembl transcript: ENST00000457841
  gene symbol: ATG9A
  hgvsc: ENST00000457841.1:c.252C>T
  hgvsp: ENST00000457841.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000416435
  ensembl transcript: ENST00000443140
  gene symbol: ATG9A
  hgvsc: ENST00000443140.1:c.252C>T
  hgvsp: ENST00000443140.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198925
  ensembl transcript: ENST00000486766
  gene symbol: ATG9A
  hgvsc: ENST00000486766.1:n.461C>T
  variant of: http://identifiers.org/hgnc/22408
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser85Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

2-220090260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 220090260
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 220090260
    reference: chr 2
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198925
  ensembl protein: ENSP00000398425
  ensembl transcript: ENST00000455079
  gene symbol: ATG9A
  hgvsc: ENST00000455079.1:c.249C>T
  hgvsp: ENST00000455079.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22408
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Leu83Leu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 3537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33388
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 3586
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8056
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.49902563333833e-4
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.750759e6

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

QD
type: SiteQuality
SIO_000300: 1.34e1

GenotypeQuality
all individuals: 3587
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8055
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3474
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33384
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.569e-1

FS
type: SiteQuality
SIO_000300: 1.0329e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.311e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.722e0

DP
type: SiteQuality
SIO_000300: 2.749323e6

GenotypeQuality
all individuals: 3474
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33388
bin: 9.75e1
variant carriers: 55

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3587
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 54
allele frequency: 5.521472392638037e-3
allele num: 9780
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.749964e6

VQSLOD
type: SiteQuality
SIO_000300: 5.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.742e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33362
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3539
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8050
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3882
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 2.744005e6

FS
type: SiteQuality
SIO_000300: 4.483e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.764e0

GenotypeQuality
all individuals: 3882
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8054
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3598
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 3.563e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 2.743989e6

VQSLOD
type: SiteQuality
SIO_000300: -2.479e0

MQ
type: SiteQuality
SIO_000300: 5.839e1

QD
type: SiteQuality
SIO_000300: 1.046e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

GenotypeQuality
all individuals: 3890
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8023
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.843e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.263e0

QD
type: SiteQuality
SIO_000300: 1.481e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 7.632e0

MQRankSum
type: SiteQuality
SIO_000300: 8.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.894e-1

DP
type: SiteQuality
SIO_000300: 2.744089e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
all individuals: 3598
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8051
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 2.744303e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

QD
type: SiteQuality
SIO_000300: 1.137e1

FS
type: SiteQuality
SIO_000300: 4.486e0

VQSLOD
type: SiteQuality
SIO_000300: 6.68e-1

GenotypeQuality
all individuals: 33368
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8047
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3598
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.874015748031496e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.91e0

VQSLOD
type: SiteQuality
SIO_000300: 7.53e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 2.744737e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3901
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33356
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3540
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3600
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8057
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592464569650881e-4
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 2.744089e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

FS
type: SiteQuality
SIO_000300: 1.2866e1

VQSLOD
type: SiteQuality
SIO_000300: -4.912e-1

QD
type: SiteQuality
SIO_000300: 1.362e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeQuality
all individuals: 3481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8059
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33353
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3599
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02082482645978e-4
allele num: 9796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 4.043e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.743915e6

MQRankSum
type: SiteQuality
SIO_000300: -1.041e0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

QD
type: SiteQuality
SIO_000300: 1.586e1

GenotypeQuality
all individuals: 2187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8061
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3901
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3599
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33353
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495863805299125e-5
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.383e1

DP
type: SiteQuality
SIO_000300: 2.743796e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.205e0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeDepth
all individuals: 3043
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7399
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33351
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3599
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.237136465324385e-3
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

QD
type: SiteQuality
SIO_000300: 1.533e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.743789e6

GenotypeDepth
all individuals: 944
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3493
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33350
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3604
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8072
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 3.577e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 2.743768e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.497e0

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeDepth
all individuals: 1076
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 943
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3605
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3493
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33350
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8042
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.71e0

VQSLOD
type: SiteQuality
SIO_000300: -5.737e-1

QD
type: SiteQuality
SIO_000300: 1.341e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 5.156e0

DP
type: SiteQuality
SIO_000300: 2.743634e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.275e0

GenotypeDepth
all individuals: 6733
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33349
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3606
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3502
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3915
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 3.448e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e-1

DP
type: SiteQuality
SIO_000300: 2.743755e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e0

QD
type: SiteQuality
SIO_000300: 1.209e1

GenotypeDepth
all individuals: 1076
bin: 7.75e1
variant carriers: 3

GenotypeDepth
all individuals: 941
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3502
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3606
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3914
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33350
bin: 9.75e1
variant carriers: 68

GenotypeQuality
all individuals: 3540
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8064
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 37
allele frequency: 5.544898693202254e-4
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 30
allele frequency: 4.535833081342607e-3
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.511e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.22e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

FS
type: SiteQuality
SIO_000300: 2.673e0

DP
type: SiteQuality
SIO_000300: 2.74365e6

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

GenotypeDepth
all individuals: 7099
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 701
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33326
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3923
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.089e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.398e0

FS
type: SiteQuality
SIO_000300: 1.419e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 2.740864e6

VQSLOD
type: SiteQuality
SIO_000300: 8.33e-1

GenotypeDepth
all individuals: 2084
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 546
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33325
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8049
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.798453330136083e-4
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

FS
type: SiteQuality
SIO_000300: 1.173e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

DP
type: SiteQuality
SIO_000300: 2.740862e6

QD
type: SiteQuality
SIO_000300: 1.332e1

GenotypeDepth
all individuals: 3366
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3043
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8046
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33323
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3927
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.408e1

MQRankSum
type: SiteQuality
SIO_000300: 7.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.740359e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

GenotypeDepth
all individuals: 3043
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 915
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2084
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4236
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5675
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6756
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33320
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3503
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.73992e6

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.184e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

VQSLOD
type: SiteQuality
SIO_000300: -2.94e-2

FS
type: SiteQuality
SIO_000300: 2.643e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.47e-1

GenotypeDepth
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 915
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1075
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7838
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7094
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 701
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33319
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8028
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3918
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3503
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

FS
type: SiteQuality
SIO_000300: 6.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 2.739898e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.392e1

GenotypeDepth
all individuals: 7416
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7837
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 701
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4236
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1466
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7092
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1074
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3917
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3608
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33319
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.518e1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.915e1

FS
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.278e0

DP
type: SiteQuality
SIO_000300: 2.739103e6

GenotypeDepth
all individuals: 5676
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6727
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 701
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1074
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7091
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7926
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33313
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3606
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 2.738509e6

QD
type: SiteQuality
SIO_000300: 1.092e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.563e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.63e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeDepth
all individuals: 364
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1074
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2081
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33294
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3818
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3532
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.006e0

VQSLOD
type: SiteQuality
SIO_000300: -1.003e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

QD
type: SiteQuality
SIO_000300: 6.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.18e-1

DP
type: SiteQuality
SIO_000300: 2.733698e6

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 6380
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 700
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7796
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2081
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7046
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33285
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3524
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3696
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3460
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e-1

FS
type: SiteQuality
SIO_000300: 7.226e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

DP
type: SiteQuality
SIO_000300: 2.727158e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeDepth
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2081
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 915
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33281
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.497e0

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

DP
type: SiteQuality
SIO_000300: 2.725289e6

FS
type: SiteQuality
SIO_000300: 1.915e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.568e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

GenotypeDepth
all individuals: 1466
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5670
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7776
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3427
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6683
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33265
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3503
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.64e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.506e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.08e-1

FS
type: SiteQuality
SIO_000300: 6.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.103e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.720971e6

GenotypeDepth
all individuals: 7059
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1112
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4230
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3417
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3502
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33264
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2118
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00147072065312e-5
allele num: 66634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.961e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

DP
type: SiteQuality
SIO_000300: 2.719406e6

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.28e-1

GenotypeDepth
all individuals: 618
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22759
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5194
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 951
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5816
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3352
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27758
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4020
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.520605112154408e-5
allele num: 15336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66148
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.869539e6

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

QD
type: SiteQuality
SIO_000300: 1.086e1

FS
type: SiteQuality
SIO_000300: 1.882e0

VQSLOD
type: SiteQuality
SIO_000300: -1.548e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e0

GenotypeDepth
all individuals: 457
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 365
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5816
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4023
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510893542441e-5
allele num: 66186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.875059e6

FS
type: SiteQuality
SIO_000300: 1.327e0

QD
type: SiteQuality
SIO_000300: 1.562e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-3

GenotypeDepth
all individuals: 618
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 457
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2506
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5816
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2411
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4028
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020691738408095e-5
allele num: 66210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.878621e6

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

FS
type: SiteQuality
SIO_000300: 7.643e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.91e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.234e1

GenotypeDepth
all individuals: 618
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5195
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1448
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28877
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4031
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5814
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.042900919305414e-4
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15484
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.879459e6

QD
type: SiteQuality
SIO_000300: 1.134e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.137e0

FS
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

GenotypeDepth
all individuals: 6813
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 457
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 951
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2506
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5195
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5814
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4031
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28877
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.137e0

DP
type: SiteQuality
SIO_000300: 1.879459e6

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

QD
type: SiteQuality
SIO_000300: 1.134e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

GenotypeDepth
all individuals: 1466
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2507
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22962
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10415
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5812
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4035
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.880675e6

QD
type: SiteQuality
SIO_000300: 1.59e1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

FS
type: SiteQuality
SIO_000300: 5.018e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.006e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 5195
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7388
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 450
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23060
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29502
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4031
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5813
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10451
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021659174499387e-4
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e0

DP
type: SiteQuality
SIO_000300: 1.886502e6

QD
type: SiteQuality
SIO_000300: 1.811e1

MQ
type: SiteQuality
SIO_000300: 6.043e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.788e0

GenotypeDepth
all individuals: 951
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2506
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1448
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 618
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30238
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5812
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4060
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15872
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319109461966605e-4
allele num: 8624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

DP
type: SiteQuality
SIO_000300: 1.898687e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.846e0

FS
type: SiteQuality
SIO_000300: 1.801e0

MQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

GenotypeDepth
all individuals: 232
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 618
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23767
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 208
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1448
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 951
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31076
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10622
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5810
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3407
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004536850644473e-5
allele num: 66566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.904e1

QD
type: SiteQuality
SIO_000300: 1.357e1

FS
type: SiteQuality
SIO_000300: 5.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.909256e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

GenotypeDepth
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 138
bin: 9.25e1
variant carriers: 120

GenotypeDepth
all individuals: 23856
bin: 2.75e1
variant carriers: 74

GenotypeDepth
all individuals: 15300
bin: 3.25e1
variant carriers: 103

GenotypeDepth
all individuals: 186
bin: 7.25e1
variant carriers: 89

GenotypeDepth
all individuals: 2483
bin: 4.25e1
variant carriers: 77

GenotypeDepth
all individuals: 99
bin: 1.25e1
variant carriers: 3

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 125

GenotypeDepth
all individuals: 58
bin: 1.75e1
variant carriers: 12

GenotypeDepth
all individuals: 822
bin: 5.25e1
variant carriers: 65

GenotypeDepth
all individuals: 334
bin: 6.25e1
variant carriers: 68

GenotypeDepth
all individuals: 1102
bin: 9.75e1
variant carriers: 1029

GenotypeDepth
all individuals: 186
bin: 7.75e1
variant carriers: 107

GenotypeDepth
all individuals: 474
bin: 5.75e1
variant carriers: 54

GenotypeQuality
all individuals: 6382
bin: 9.75e1
variant carriers: 2291

GenotypeQuality
all individuals: 3377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10587
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4039
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31008
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 961
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 65
allele frequency: 6.631299734748011e-3
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1279
allele frequency: 1.919843890723506e-2
allele num: 66620
num of homozygotes: 13

European (Finnish)
type: Population
allele count: 27
allele frequency: 4.082249773208346e-3
allele num: 6614
num of homozygotes: 1

Other
type: Population
allele count: 11
allele frequency: 1.224944320712695e-2
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 817
allele frequency: 4.980492562789564e-2
allele num: 16404
num of homozygotes: 31

Latino
type: Population
allele count: 144
allele frequency: 1.243953006219765e-2
allele num: 11576
num of homozygotes: 2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

DP
type: SiteQuality
SIO_000300: 1.990151e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 6.73e0

QD
type: SiteQuality
SIO_000300: 1.468e1

GenotypeDepth
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15845
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2492
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 427
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1334
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8311
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3502
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10996
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

VQSLOD
type: SiteQuality
SIO_000300: -1.858e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.06e-1

DP
type: SiteQuality
SIO_000300: 1.852618e6

FS
type: SiteQuality
SIO_000300: 6.734e0

MQRankSum
type: SiteQuality
SIO_000300: -8.81e-1

QD
type: SiteQuality
SIO_000300: 1.031e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeDepth
all individuals: 5301
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 778
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24920
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8337
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1334
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15828
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2485
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11010
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32407
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4196
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

QD
type: SiteQuality
SIO_000300: 1.293e1

FS
type: SiteQuality
SIO_000300: 2.042e0

VQSLOD
type: SiteQuality
SIO_000300: -1.104e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.073e0

DP
type: SiteQuality
SIO_000300: 1.852825e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.17e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

GenotypeDepth
all individuals: 778
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 278
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 427
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5298
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8312
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2476
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32468
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000300030003e-5
allele num: 66660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.853595e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.705e0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.35e1

GenotypeDepth
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5297
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2491
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 277
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24985
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 179
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4222
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11014
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5419e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: -1.027e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e0

DP
type: SiteQuality
SIO_000300: 1.8536e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.93e-1

QD
type: SiteQuality
SIO_000300: 1.677e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeDepth
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1337
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 25004
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2490
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 277
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5301
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8318
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4221
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3507
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32507
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11012
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.854135e6

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 3.044e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

QD
type: SiteQuality
SIO_000300: 1.499e1

GenotypeDepth
all individuals: 777
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2489
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25015
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5297
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8335
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 9.75e1
variant carriers: 7

GenotypeDepth
all individuals: 1333
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15831
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11019
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4220
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32548
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.019991840065279e-4
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498155756139982e-5
allele num: 66694
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.796429399489915e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

FS
type: SiteQuality
SIO_000300: 1.088e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 1.854487e6

GenotypeDepth
all individuals: 1335
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25022
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5298
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2490
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8332
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 277
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2481
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4212
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11019
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.579e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.13e1

FS
type: SiteQuality
SIO_000300: 5.818e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.679e0

DP
type: SiteQuality
SIO_000300: 1.853733e6

VQSLOD
type: SiteQuality
SIO_000300: -2.641e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.764e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeDepth
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8341
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1333
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15842
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 18
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32592
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4211
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4190
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11017
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.546e0

QD
type: SiteQuality
SIO_000300: 2.228e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

FS
type: SiteQuality
SIO_000300: 3.599e0

DP
type: SiteQuality
SIO_000300: 1.85401e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.639e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8343
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5298
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15839
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 79
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 777
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4209
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32605
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11017
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.694e1

FS
type: SiteQuality
SIO_000300: 1.275e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.854123e6

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.14e-1

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2487
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1333
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25052
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5299
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 80
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15839
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32614
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11018
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4208
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4187
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.29e1

FS
type: SiteQuality
SIO_000300: 3.77e0

DP
type: SiteQuality
SIO_000300: 1.85417e6

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeDepth
all individuals: 175
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 779
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 15840
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8336
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2487
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 43
bin: 8.25e1
variant carriers: 3

GenotypeDepth
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 423
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 21
bin: 9.25e1
variant carriers: 3

GenotypeDepth
all individuals: 276
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32605
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4212
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 11020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.992536194958184e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.873062015503876e-4
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.294e1

DP
type: SiteQuality
SIO_000300: 1.854845e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

FS
type: SiteQuality
SIO_000300: 1.104e0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

GenotypeDepth
all individuals: 25068
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 775
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1330
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15844
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5297
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4185
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 1.106e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
SIO_000300: 1.384e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.853607e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.49e0

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15846
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2483
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 775
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5297
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 78
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 423
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11026
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4192
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 32632
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019991840065279e-4
allele num: 9804
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.815e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

DP
type: SiteQuality
SIO_000300: 1.853677e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.416e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeDepth
all individuals: 1330
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2483
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8339
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5297
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11026
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.019991840065279e-4
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

MQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

FS
type: SiteQuality
SIO_000300: 1.815e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.416e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.53e-1

DP
type: SiteQuality
SIO_000300: 1.853677e6

GenotypeDepth
all individuals: 8340
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1331
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15845
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5298
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 775
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2483
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25073
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11026
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4189
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.285e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: -5.516e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.97e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

DP
type: SiteQuality
SIO_000300: 1.853423e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

FS
type: SiteQuality
SIO_000300: 3.175e0

GenotypeDepth
all individuals: 173
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2483
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 77
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 421
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 775
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 275
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 25074
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019991840065279e-4
allele num: 9804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.853489e6

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

FS
type: SiteQuality
SIO_000300: 4.012e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.791e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

GenotypeDepth
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 421
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25074
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5297
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1331
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 275
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 775
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495863805299125e-5
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.791e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 4.012e0

DP
type: SiteQuality
SIO_000300: 1.853489e6

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeDepth
all individuals: 5298
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 275
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25079
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15845
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2482
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1331
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4185
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11028
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

FS
type: SiteQuality
SIO_000300: 2.811e0

QD
type: SiteQuality
SIO_000300: 1.464e1

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
SIO_000300: -1.505e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.282e0

DP
type: SiteQuality
SIO_000300: 1.853234e6

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8341
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1330
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 775
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 25078
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2483
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.059975520195838e-4
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.85343e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.076e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.473e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 1.126e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.251e1

GenotypeDepth
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15846
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 775
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1330
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25078
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5299
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2481
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11029
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.313e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.641e0

QD
type: SiteQuality
SIO_000300: 1.269e1

MQRankSum
type: SiteQuality
SIO_000300: -1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 3.742e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.853003e6

VQSLOD
type: SiteQuality
SIO_000300: -2.466e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeDepth
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25083
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2480
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15842
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5297
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 775
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8333
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1330
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2476
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4176
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4182
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.862e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

VQSLOD
type: SiteQuality
SIO_000300: -1.076e0

FS
type: SiteQuality
SIO_000300: 9.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 1.852656e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.595e0

MQRankSum
type: SiteQuality
SIO_000300: 7.82e-1

GenotypeDepth
all individuals: 8332
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15838
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 272
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25085
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2480
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 774
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5296
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1329
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 77
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 20
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4174
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3507
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593360995850622e-4
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.142e1

FS
type: SiteQuality
SIO_000300: 1.3079e1

DP
type: SiteQuality
SIO_000300: 1.852527e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.673e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.781e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.14e-1

GenotypeDepth
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8320
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 272
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5296
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25091
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2480
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15837
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1329
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4170
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

DP
type: SiteQuality
SIO_000300: 1.852261e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.98e-1

FS
type: SiteQuality
SIO_000300: 3.73e0

QD
type: SiteQuality
SIO_000300: 1.695e1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5296
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2479
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1329
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8323
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15837
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25087
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 773
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11026
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4168
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.213e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e0

FS
type: SiteQuality
SIO_000300: 4.098e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.273e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.78e-1

DP
type: SiteQuality
SIO_000300: 1.852193e6

GenotypeDepth
all individuals: 772
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5291
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2479
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8320
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15839
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 271
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25087
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1329
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4181
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11022
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4164
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.851806e6

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.067e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 25084
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5290
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8322
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15839
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1330
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2481
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 271
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 772
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4164
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.109e0

MQRankSum
type: SiteQuality
SIO_000300: -1.267e0

QD
type: SiteQuality
SIO_000300: 1.097e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.503e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.47e-1

DP
type: SiteQuality
SIO_000300: 1.851824e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 5.775e0

GenotypeDepth
all individuals: 418
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8316
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25073
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1328
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 770
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2479
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 116
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15834
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5288
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 66
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11018
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4160
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.602e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

QD
type: SiteQuality
SIO_000300: 1.082e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.933e1

MQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.919999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.195e0

DP
type: SiteQuality
SIO_000300: 1.851308e6