1-47767456-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767456
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767456
    reference: chr 1
allele count: 1
allele frequency: 8.41609156707625e-6
allele num: 118820
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.266-36G>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.266-36G>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.266-36G>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.266-36G>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.266-36G>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.266-36G>C
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8578
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5786
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-47767855-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767855
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767855
    reference: chr 1
allele count: 1
allele frequency: 9.49162838376552e-6
allele num: 105356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+51G>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+51G>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+51G>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+51G>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+51G>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+51G>T
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6204
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5402
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

1-47767855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767855
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767855
    reference: chr 1
allele count: 2
allele frequency: 1.898325676753104e-5
allele num: 105356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+51G>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+51G>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+51G>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+51G>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+51G>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+51G>A
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15671
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8498
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5747
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4341
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

1-47767856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767856
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767856
    reference: chr 1
allele count: 2
allele frequency: 1.835974076046046e-5
allele num: 108934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+50C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+50C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+50C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+50C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+50C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+50C>T
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15115
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5597
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8559
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-47767872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767872
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767872
    reference: chr 1
allele count: 2
allele frequency: 1.810151328651075e-5
allele num: 110488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+34G>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+34G>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+34G>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+34G>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+34G>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+34G>A
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19450
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5636
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5026
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4703
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

1-47767873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767873
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767873
    reference: chr 1
allele count: 12
allele frequency: 1.081724268483963e-4
allele num: 110934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+33C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+33C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+33C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+33C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+33C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+33C>T
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10306
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20693
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4727
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

1-47767875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767875
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767875
    reference: chr 1
allele count: 1
allele frequency: 8.958967926894822e-6
allele num: 111620
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+31C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+31C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+31C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+31C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+31C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+31C>T
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22892
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22960
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5307
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-47767876-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767876
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767876
    reference: chr 1
allele count: 1
allele frequency: 8.92889031751134e-6
allele num: 111996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+30T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+30T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+30T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+30T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+30T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+30T>C
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8619
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-47767882-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767882
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767882
    reference: chr 1
allele count: 23
allele frequency: 2.023614703760404e-4
allele num: 113658
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+24C>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+24C>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+24C>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+24C>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+24C>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+24C>G
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28263
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8202
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8662
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum

1-47767892-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767892
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767892
    reference: chr 1
allele count: 1
allele frequency: 8.538834619851082e-6
allele num: 117112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+14A>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+14A>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+14A>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+14A>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+14A>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+14A>T
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32349
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5401
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8725
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

1-47767893-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767893
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767893
    reference: chr 1
allele count: 1
allele frequency: 8.516871923280018e-6
allele num: 117414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+13T>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+13T>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+13T>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+13T>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+13T>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+13T>A
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32585
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-47767893-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767893
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767893
    reference: chr 1
allele count: 1
allele frequency: 8.516871923280018e-6
allele num: 117414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+13T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+13T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+13T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+13T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+13T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+13T>C
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

1-47767894-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767894
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767894
    reference: chr 1
allele count: 1
allele frequency: 8.496609852668785e-6
allele num: 117694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+12T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+12T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+12T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+12T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+12T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+12T>C
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

1-47767899-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767899
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767899
    reference: chr 1
allele count: 2
allele frequency: 1.685601591207902e-5
allele num: 118652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+7C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+7C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+7C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+7C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+7C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+7C>T
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
hgvs: c.265+7C>T
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

1-47767899-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767899
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767899
    reference: chr 1
allele count: 1
allele frequency: 8.42800795603951e-6
allele num: 118652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.265+7C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.265+7C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.265+7C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.265+7C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.265+7C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.265+7C>A
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
hgvs: c.265+7C>A
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-47767908-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767908
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767908
    reference: chr 1
allele count: 5
allele frequency: 4.164168165767206e-5
allele num: 120072
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.263A>C
  hgvsp: ENSP00000360944.3:p.Glu88Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.263A>C
  hgvsp: ENSP00000337367.5:p.Glu88Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.263A>C
  hgvsp: ENSP00000411664.2:p.Glu88Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.263A>C
  hgvsp: ENSP00000379523.2:p.Glu88Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.263A>C
  hgvsp: ENSP00000243182.6:p.Glu88Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.263A>C
  hgvsp: ENSP00000353544.3:p.Glu88Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.275A>C
  hgvsp: ENSP00000412019.1:p.Glu92Ala
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10671
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5943
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8813
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu88Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

1-47767909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767909
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767909
    reference: chr 1
allele count: 5
allele frequency: 4.161326297917672e-5
allele num: 120154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.262G>A
  hgvsp: ENSP00000353544.3:p.Glu88Lys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.262G>A
  hgvsp: ENSP00000360944.3:p.Glu88Lys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.262G>A
  hgvsp: ENSP00000411664.2:p.Glu88Lys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.262G>A
  hgvsp: ENSP00000243182.6:p.Glu88Lys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.274G>A
  hgvsp: ENSP00000412019.1:p.Glu92Lys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.262G>A
  hgvsp: ENSP00000337367.5:p.Glu88Lys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.262G>A
  hgvsp: ENSP00000379523.2:p.Glu88Lys
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8816
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu88Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum

1-47767910-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767910
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767910
    reference: chr 1
allele count: 1
allele frequency: 8.306889734345666e-6
allele num: 120382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.261C>T
  hgvsp: ENST00000447475.2:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.261C>T
  hgvsp: ENST00000337817.5:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.273C>T
  hgvsp: ENST00000413565.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.261C>T
  hgvsp: ENST00000243182.6:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.261C>T
  hgvsp: ENST00000371877.3:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.261C>T
  hgvsp: ENST00000396221.2:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.261C>T
  hgvsp: ENST00000360380.3:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp87Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

1-47767914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767914
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767914
    reference: chr 1
allele count: 60901
allele frequency: 5.03447192645989e-1
allele num: 120968
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.257C>T
  hgvsp: ENSP00000379523.2:p.Ala86Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.257C>T
  hgvsp: ENSP00000337367.5:p.Ala86Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  clinical significance: benign&likely_benign
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.257C>T
  hgvsp: ENSP00000360944.3:p.Ala86Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.257C>T
  hgvsp: ENSP00000243182.6:p.Ala86Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.269C>T
  hgvsp: ENSP00000412019.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.257C>T
  hgvsp: ENSP00000353544.3:p.Ala86Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.257C>T
  hgvsp: ENSP00000411664.2:p.Ala86Val
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 4.75e1
  variant carriers: 5498
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 4.25e1
  variant carriers: 5381
genotype depth: GenotypeDepth
  all individuals: 9852
  bin: 2.25e1
  variant carriers: 788
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 6.75e1
  variant carriers: 1897
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 5.25e1
  variant carriers: 4778
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 3.75e1
  variant carriers: 4471
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 3.25e1
  variant carriers: 3193
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.25e1
  variant carriers: 575
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 8.75e1
  variant carriers: 461
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 5.75e1
  variant carriers: 3893
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.75e1
  variant carriers: 809
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 9.75e1
  variant carriers: 6628
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 2.75e1
  variant carriers: 1770
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 6.25e1
  variant carriers: 2708
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 1275
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 357
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 417
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.25e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 215
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 7
hgvs: p.Ala86Val
num of homozygotes: 16139
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-47767928-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767928
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767928
    reference: chr 1
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.243T>A
  hgvsp: ENST00000371877.3:c.243T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.255T>A
  hgvsp: ENST00000413565.1:c.255T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.243T>A
  hgvsp: ENST00000337817.5:c.243T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.243T>A
  hgvsp: ENST00000396221.2:c.243T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.243T>A
  hgvsp: ENST00000243182.6:c.243T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.243T>A
  hgvsp: ENST00000360380.3:c.243T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.243T>A
  hgvsp: ENST00000447475.2:c.243T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu81Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS

1-47767930-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767930
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767930
    reference: chr 1
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.241C>G
  hgvsp: ENSP00000243182.6:p.Leu81Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.241C>G
  hgvsp: ENSP00000353544.3:p.Leu81Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.241C>G
  hgvsp: ENSP00000411664.2:p.Leu81Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.241C>G
  hgvsp: ENSP00000379523.2:p.Leu81Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.241C>G
  hgvsp: ENSP00000337367.5:p.Leu81Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.253C>G
  hgvsp: ENSP00000412019.1:p.Leu85Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.241C>G
  hgvsp: ENSP00000360944.3:p.Leu81Val
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu81Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

1-47767943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767943
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767943
    reference: chr 1
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.228G>A
  hgvsp: ENST00000360380.3:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.228G>A
  hgvsp: ENST00000371877.3:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.228G>A
  hgvsp: ENST00000337817.5:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.228G>A
  hgvsp: ENST00000447475.2:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.240G>A
  hgvsp: ENST00000413565.1:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.228G>A
  hgvsp: ENST00000396221.2:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.228G>A
  hgvsp: ENST00000243182.6:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser76Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

1-47767944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767944
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767944
    reference: chr 1
allele count: 13
allele frequency: 1.071723000824402e-4
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.227C>T
  hgvsp: ENSP00000360944.3:p.Ser76Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.227C>T
  hgvsp: ENSP00000411664.2:p.Ser76Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.227C>T
  hgvsp: ENSP00000337367.5:p.Ser76Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.239C>T
  hgvsp: ENSP00000412019.1:p.Ser80Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.227C>T
  hgvsp: ENSP00000353544.3:p.Ser76Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.227C>T
  hgvsp: ENSP00000379523.2:p.Ser76Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.227C>T
  hgvsp: ENSP00000243182.6:p.Ser76Leu
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6480
  bin: 9.75e1
  variant carriers: 13
hgvs: p.Ser76Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/1-47767945-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767945
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767945
    reference: chr 1
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.226T>G
  hgvsp: ENSP00000337367.5:p.Ser76Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.226T>G
  hgvsp: ENSP00000353544.3:p.Ser76Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.226T>G
  hgvsp: ENSP00000379523.2:p.Ser76Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.238T>G
  hgvsp: ENSP00000412019.1:p.Ser80Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.226T>G
  hgvsp: ENSP00000243182.6:p.Ser76Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.226T>G
  hgvsp: ENSP00000360944.3:p.Ser76Ala
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.226T>G
  hgvsp: ENSP00000411664.2:p.Ser76Ala
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser76Ala
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-47767946-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767946
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767946
    reference: chr 1
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.237T>C
  hgvsp: ENST00000413565.1:c.237T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.225T>C
  hgvsp: ENST00000243182.6:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.225T>C
  hgvsp: ENST00000371877.3:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.225T>C
  hgvsp: ENST00000337817.5:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.225T>C
  hgvsp: ENST00000360380.3:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.225T>C
  hgvsp: ENST00000447475.2:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.225T>C
  hgvsp: ENST00000396221.2:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn75Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

1-47767946-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767946
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767945
    reference: chr 1
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.224delA
  hgvsp: ENSP00000243182.6:p.Asn75IlefsTer10
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.236delA
  hgvsp: ENSP00000412019.1:p.Asn79IlefsTer10
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.224delA
  hgvsp: ENSP00000379523.2:p.Asn75IlefsTer10
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.224delA
  hgvsp: ENSP00000411664.2:p.Asn75IlefsTer10
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.224delA
  hgvsp: ENSP00000337367.5:p.Asn75IlefsTer10
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.224delA
  hgvsp: ENSP00000353544.3:p.Asn75IlefsTer10
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.224delA
  hgvsp: ENSP00000360944.3:p.Asn75IlefsTer10
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn75IlefsTer10
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: AT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

1-47767947-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767947
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767947
    reference: chr 1
allele count: 2
allele frequency: 1.650982334489021e-5
allele num: 121140
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.224A>T
  hgvsp: ENSP00000360944.3:p.Asn75Ile
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.224A>T
  hgvsp: ENSP00000353544.3:p.Asn75Ile
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.224A>T
  hgvsp: ENSP00000411664.2:p.Asn75Ile
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.224A>T
  hgvsp: ENSP00000243182.6:p.Asn75Ile
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.224A>T
  hgvsp: ENSP00000337367.5:p.Asn75Ile
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.224A>T
  hgvsp: ENSP00000379523.2:p.Asn75Ile
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.236A>T
  hgvsp: ENSP00000412019.1:p.Asn79Ile
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6375
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn75Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

1-47767955-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767955
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767955
    reference: chr 1
allele count: 3
allele frequency: 2.472799208704253e-5
allele num: 121320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.216T>C
  hgvsp: ENST00000243182.6:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.216T>C
  hgvsp: ENST00000447475.2:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.228T>C
  hgvsp: ENST00000413565.1:c.228T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.216T>C
  hgvsp: ENST00000337817.5:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.216T>C
  hgvsp: ENST00000396221.2:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.216T>C
  hgvsp: ENST00000360380.3:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.216T>C
  hgvsp: ENST00000371877.3:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43865
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6511
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn72Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

1-47767956-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767956
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767956
    reference: chr 1
allele count: 2
allele frequency: 1.648505629646725e-5
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.215A>G
  hgvsp: ENSP00000243182.6:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.215A>G
  hgvsp: ENSP00000360944.3:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.215A>G
  hgvsp: ENSP00000379523.2:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.215A>G
  hgvsp: ENSP00000337367.5:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.215A>G
  hgvsp: ENSP00000353544.3:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.227A>G
  hgvsp: ENSP00000412019.1:p.Asn76Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.215A>G
  hgvsp: ENSP00000411664.2:p.Asn72Ser
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn72Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

1-47767959-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767959
    reference: chr 1
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.224A>G
  hgvsp: ENSP00000412019.1:p.Gln75Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.212A>G
  hgvsp: ENSP00000360944.3:p.Gln71Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.212A>G
  hgvsp: ENSP00000353544.3:p.Gln71Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.212A>G
  hgvsp: ENSP00000379523.2:p.Gln71Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.212A>G
  hgvsp: ENSP00000243182.6:p.Gln71Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.212A>G
  hgvsp: ENSP00000411664.2:p.Gln71Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.212A>G
  hgvsp: ENSP00000337367.5:p.Gln71Arg
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln71Arg
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

1-47767961-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767961
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767961
    reference: chr 1
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.210G>A
  hgvsp: ENST00000396221.2:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.210G>A
  hgvsp: ENST00000243182.6:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.210G>A
  hgvsp: ENST00000337817.5:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.210G>A
  hgvsp: ENST00000360380.3:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.210G>A
  hgvsp: ENST00000447475.2:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.210G>A
  hgvsp: ENST00000371877.3:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.222G>A
  hgvsp: ENST00000413565.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys70Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-47767966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767966
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767966
    reference: chr 1
allele count: 7
allele frequency: 5.769103975736797e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.205G>A
  hgvsp: ENSP00000337367.5:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.217G>A
  hgvsp: ENSP00000412019.1:p.Ala73Thr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.205G>A
  hgvsp: ENSP00000353544.3:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.205G>A
  hgvsp: ENSP00000411664.2:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.205G>A
  hgvsp: ENSP00000379523.2:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.205G>A
  hgvsp: ENSP00000360944.3:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.205G>A
  hgvsp: ENSP00000243182.6:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6374
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Ala69Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-47767968-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767968
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767968
    reference: chr 1
allele count: 3
allele frequency: 2.472513887286333e-5
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.203A>G
  hgvsp: ENSP00000353544.3:p.His68Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.215A>G
  hgvsp: ENSP00000412019.1:p.His72Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.203A>G
  hgvsp: ENSP00000243182.6:p.His68Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.203A>G
  hgvsp: ENSP00000360944.3:p.His68Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.203A>G
  hgvsp: ENSP00000379523.2:p.His68Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.203A>G
  hgvsp: ENSP00000337367.5:p.His68Arg
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.203A>G
  hgvsp: ENSP00000411664.2:p.His68Arg
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43921
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His68Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-47767971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767971
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767971
    reference: chr 1
allele count: 7
allele frequency: 5.769199070334778e-5
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.200G>A
  hgvsp: ENSP00000411664.2:p.Arg67His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.200G>A
  hgvsp: ENSP00000379523.2:p.Arg67His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.200G>A
  hgvsp: ENSP00000243182.6:p.Arg67His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.200G>A
  hgvsp: ENSP00000360944.3:p.Arg67His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.200G>A
  hgvsp: ENSP00000337367.5:p.Arg67His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.212G>A
  hgvsp: ENSP00000412019.1:p.Arg71His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.200G>A
  hgvsp: ENSP00000353544.3:p.Arg67His
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6369
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg67His
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-47767972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767972
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767972
    reference: chr 1
allele count: 8
allele frequency: 6.59337036609689e-5
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.199C>T
  hgvsp: ENSP00000243182.6:p.Arg67Cys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.199C>T
  hgvsp: ENSP00000337367.5:p.Arg67Cys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.199C>T
  hgvsp: ENSP00000360944.3:p.Arg67Cys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.211C>T
  hgvsp: ENSP00000412019.1:p.Arg71Cys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.199C>T
  hgvsp: ENSP00000411664.2:p.Arg67Cys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.199C>T
  hgvsp: ENSP00000379523.2:p.Arg67Cys
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.199C>T
  hgvsp: ENSP00000353544.3:p.Arg67Cys
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6364
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg67Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-47767975-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767975
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767975
    reference: chr 1
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.208T>C
  hgvsp: ENSP00000412019.1:p.Tyr70His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.196T>C
  hgvsp: ENSP00000379523.2:p.Tyr66His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.196T>C
  hgvsp: ENSP00000353544.3:p.Tyr66His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.196T>C
  hgvsp: ENSP00000243182.6:p.Tyr66His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.196T>C
  hgvsp: ENSP00000411664.2:p.Tyr66His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.196T>C
  hgvsp: ENSP00000337367.5:p.Tyr66His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.196T>C
  hgvsp: ENSP00000360944.3:p.Tyr66His
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr66His
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-47767983-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767983
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767983
    reference: chr 1
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.188G>T
  hgvsp: ENSP00000411664.2:p.Arg63Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.188G>T
  hgvsp: ENSP00000353544.3:p.Arg63Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.188G>T
  hgvsp: ENSP00000360944.3:p.Arg63Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.188G>T
  hgvsp: ENSP00000337367.5:p.Arg63Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.200G>T
  hgvsp: ENSP00000412019.1:p.Arg67Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.188G>T
  hgvsp: ENSP00000379523.2:p.Arg63Leu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.188G>T
  hgvsp: ENSP00000243182.6:p.Arg63Leu
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg63Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-47767983-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767983
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767983
    reference: chr 1
allele count: 2
allele frequency: 1.648614339647526e-5
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.188G>A
  hgvsp: ENSP00000411664.2:p.Arg63Gln
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.188G>A
  hgvsp: ENSP00000360944.3:p.Arg63Gln
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.188G>A
  hgvsp: ENSP00000337367.5:p.Arg63Gln
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.188G>A
  hgvsp: ENSP00000243182.6:p.Arg63Gln
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.188G>A
  hgvsp: ENSP00000353544.3:p.Arg63Gln
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.200G>A
  hgvsp: ENSP00000412019.1:p.Arg67Gln
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.188G>A
  hgvsp: ENSP00000379523.2:p.Arg63Gln
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6508
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg63Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-47767984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767984
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767984
    reference: chr 1
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.187C>T
  hgvsp: ENSP00000243182.6:p.Arg63Ter
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.187C>T
  hgvsp: ENSP00000411664.2:p.Arg63Ter
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.187C>T
  hgvsp: ENSP00000353544.3:p.Arg63Ter
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.187C>T
  hgvsp: ENSP00000360944.3:p.Arg63Ter
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.187C>T
  hgvsp: ENSP00000379523.2:p.Arg63Ter
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.199C>T
  hgvsp: ENSP00000412019.1:p.Arg67Ter
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.187C>T
  hgvsp: ENSP00000337367.5:p.Arg63Ter
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6511
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg63Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/1-47767991-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47767991
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47767991
    reference: chr 1
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.180G>T
  hgvsp: ENSP00000353544.3:p.Lys60Asn
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.180G>T
  hgvsp: ENSP00000411664.2:p.Lys60Asn
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.180G>T
  hgvsp: ENSP00000360944.3:p.Lys60Asn
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.192G>T
  hgvsp: ENSP00000412019.1:p.Lys64Asn
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.180G>T
  hgvsp: ENSP00000243182.6:p.Lys60Asn
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.180G>T
  hgvsp: ENSP00000337367.5:p.Lys60Asn
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.180G>T
  hgvsp: ENSP00000379523.2:p.Lys60Asn
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43927
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys60Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

1-47768012-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47768012
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47768012
    reference: chr 1
allele count: 2
allele frequency: 1.653521173338625e-5
allele num: 120954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.171A>G
  hgvsp: ENST00000413565.1:c.171A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.159A>G
  hgvsp: ENST00000396221.2:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.159A>G
  hgvsp: ENST00000447475.2:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.159A>G
  hgvsp: ENST00000371877.3:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.159A>G
  hgvsp: ENST00000243182.6:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.159A>G
  hgvsp: ENST00000337817.5:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.159A>G
  hgvsp: ENST00000360380.3:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro53Pro
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/1-47768024-AAAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47768024
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47768021
    reference: chr 1
allele count: 3
allele frequency: 2.499166944351883e-5
allele num: 120040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.153-9_153-7delGTT
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.153-9_153-7delGTT
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.153-9_153-7delGTT
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.165-9_165-7delGTT
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.153-9_153-7delGTT
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.153-9_153-7delGTT
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.153-9_153-7delGTT
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12065
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42091
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.25e1
  variant carriers: 0
hgvs: c.153-9_153-7delGTT
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: AAAC
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-47768034-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47768034
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47768034
    reference: chr 1
allele count: 1
allele frequency: 8.47443263673497e-6
allele num: 118002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.153-16A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.153-16A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.153-16A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.153-16A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.153-16A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.165-16A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.153-16A>G
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-47768035-CTTTTATGAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47768035
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47768026
    reference: chr 1
allele count: 3
allele frequency: 2.549632852869187e-5
allele num: 117664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5540
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: CTTTTATGAA
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

1-47768045-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47768045
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47768045
    reference: chr 1
allele count: 1
allele frequency: 8.657708823936834e-6
allele num: 115504
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.153-27A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.153-27A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.153-27A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.153-27A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.165-27A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.153-27A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.153-27A>G
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6388
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3639
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

1-47768052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47768052
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47768052
    reference: chr 1
allele count: 2
allele frequency: 1.776262034175282e-5
allele num: 112596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.153-34C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.153-34C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.165-34C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.153-34C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.153-34C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.153-34C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.153-34C>T
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13247
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8016
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13387
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

1-47768058-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47768058
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47768058
    reference: chr 1
allele count: 2
allele frequency: 1.877934272300469e-5
allele num: 106500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.165-40T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.153-40T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.153-40T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.153-40T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.153-40T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.153-40T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.153-40T>C
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16014
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15864
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

1-47768064-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47768064
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47768064
    reference: chr 1
allele count: 73
allele frequency: 8.348009057018046e-4
allele num: 87446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.153-46A>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.153-46A>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.153-46A>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.153-46A>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.153-46A>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.165-46A>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.153-46A>T
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14975
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 15985
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 7295
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4451
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4685
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6514
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10427
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3624
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4858
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.25e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

1-47770513-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770513
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770513
    reference: chr 1
allele count: 1
allele frequency: 1.049560234261844e-5
allele num: 95278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.152+48A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.164+48A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.152+48A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.152+48A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.152+48A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.152+48A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.152+48A>G
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17988
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6070
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2493
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9969
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-47770517-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770517
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770515
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 95226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.152+42_152+43delAA
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.152+42_152+43delAA
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.164+42_164+43delAA
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.152+42_152+43delAA
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.152+42_152+43delAA
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.152+42_152+43delAA
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.152+42_152+43delAA
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6009
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7569
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11368
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: CTT
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

1-47770520-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770520
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770520
    reference: chr 1
allele count: 1
allele frequency: 1.048020289672808e-5
allele num: 95418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.164+41C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.152+41C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.152+41C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.152+41C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.152+41C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.152+41C>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.152+41C>T
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17820
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5004
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

1-47770534-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770534
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770534
    reference: chr 1
allele count: 441
allele frequency: 4.888810056980689e-3
allele num: 90206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.152+27C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.152+27C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.152+27C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.152+27C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.152+27C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.164+27C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.152+27C>A
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 13846
  bin: 1.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 10654
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 2.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 15851
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 1.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 5926
  bin: 3.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 4488
  bin: 2.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 3803
  bin: 3.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 5.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 1.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 18353
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 7.5e0
  variant carriers: 23
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

1-47770535-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770535
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770535
    reference: chr 1
allele count: 33
allele frequency: 3.389691229944327e-4
allele num: 97354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.152+26T>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.152+26T>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.152+26T>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.164+26T>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.152+26T>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.152+26T>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.152+26T>A
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16528
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13458
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4517
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.25e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

1-47770539-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770539
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770539
    reference: chr 1
allele count: 2
allele frequency: 2.023308514082227e-5
allele num: 98848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.152+22C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.152+22C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.152+22C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.152+22C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.152+22C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.152+22C>A
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.164+22C>A
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2952
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10778
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

1-47770553-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770553
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770553
    reference: chr 1
allele count: 2
allele frequency: 1.808808899339785e-5
allele num: 110570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.152+8A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.164+8A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.152+8A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.152+8A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.152+8A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.152+8A>G
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.152+8A>G
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13315
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3845
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
hgvs: c.152+8A>G
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

1-47770557-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770557
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770557
    reference: chr 1
allele count: 11
allele frequency: 9.728658860154952e-5
allele num: 113068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.152+4T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.152+4T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.152+4T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.164+4T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.152+4T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.152+4T>C
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.152+4T>C
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13815
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4772
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.75e1
  variant carriers: 0
hgvs: c.152+4T>C
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-47770560-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770560
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770560
    reference: chr 1
allele count: 1
allele frequency: 8.714293183679872e-6
allele num: 114754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.152+1G>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.152+1G>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.152+1G>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.152+1G>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.152+1G>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.152+1G>T
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.164+1G>T
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4096
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: c.152+1G>T
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

1-47770571-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770571
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770571
    reference: chr 1
allele count: 2
allele frequency: 1.691217507483638e-5
allele num: 118258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.154A>G
  hgvsp: ENSP00000412019.1:p.Ser52Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.142A>G
  hgvsp: ENSP00000337367.5:p.Ser48Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.142A>G
  hgvsp: ENSP00000379523.2:p.Ser48Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.142A>G
  hgvsp: ENSP00000243182.6:p.Ser48Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.142A>G
  hgvsp: ENSP00000353544.3:p.Ser48Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.142A>G
  hgvsp: ENSP00000411664.2:p.Ser48Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.142A>G
  hgvsp: ENSP00000360944.3:p.Ser48Gly
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15124
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4387
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser48Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

1-47770577-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770577
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770577
    reference: chr 1
allele count: 1
allele frequency: 8.400678774845007e-6
allele num: 119038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.136C>T
  hgvsp: ENSP00000411664.2:p.His46Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.136C>T
  hgvsp: ENSP00000353544.3:p.His46Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.148C>T
  hgvsp: ENSP00000412019.1:p.His50Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.136C>T
  hgvsp: ENSP00000360944.3:p.His46Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.136C>T
  hgvsp: ENSP00000379523.2:p.His46Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.136C>T
  hgvsp: ENSP00000337367.5:p.His46Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.136C>T
  hgvsp: ENSP00000243182.6:p.His46Tyr
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4432
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His46Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

1-47770582-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770582
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770582
    reference: chr 1
allele count: 1
allele frequency: 8.358548287333457e-6
allele num: 119638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.131A>C
  hgvsp: ENSP00000379523.2:p.Tyr44Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.131A>C
  hgvsp: ENSP00000360944.3:p.Tyr44Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.143A>C
  hgvsp: ENSP00000412019.1:p.Tyr48Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.131A>C
  hgvsp: ENSP00000353544.3:p.Tyr44Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.131A>C
  hgvsp: ENSP00000337367.5:p.Tyr44Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.131A>C
  hgvsp: ENSP00000411664.2:p.Tyr44Ser
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.131A>C
  hgvsp: ENSP00000243182.6:p.Tyr44Ser
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49892
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr44Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

1-47770586-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770586
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770586
    reference: chr 1
allele count: 2
allele frequency: 1.665001665001665e-5
allele num: 120120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.127A>G
  hgvsp: ENSP00000337367.5:p.Ile43Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.127A>G
  hgvsp: ENSP00000360944.3:p.Ile43Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.127A>G
  hgvsp: ENSP00000353544.3:p.Ile43Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.127A>G
  hgvsp: ENSP00000243182.6:p.Ile43Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.139A>G
  hgvsp: ENSP00000412019.1:p.Ile47Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.127A>G
  hgvsp: ENSP00000379523.2:p.Ile43Val
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.127A>G
  hgvsp: ENSP00000411664.2:p.Ile43Val
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4534
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile43Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-47770590-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770590
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770590
    reference: chr 1
allele count: 16
allele frequency: 1.329190689019223e-4
allele num: 120374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.123T>G
  hgvsp: ENSP00000379523.2:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.123T>G
  hgvsp: ENSP00000243182.6:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.123T>G
  hgvsp: ENSP00000411664.2:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.123T>G
  hgvsp: ENSP00000360944.3:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.123T>G
  hgvsp: ENSP00000353544.3:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.135T>G
  hgvsp: ENSP00000412019.1:p.Asp45Glu
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.123T>G
  hgvsp: ENSP00000337367.5:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4558
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp41Glu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-47770591-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770591
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770591
    reference: chr 1
allele count: 1
allele frequency: 8.303440945927993e-6
allele num: 120432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.122A>G
  hgvsp: ENSP00000353544.3:p.Asp41Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.122A>G
  hgvsp: ENSP00000379523.2:p.Asp41Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.134A>G
  hgvsp: ENSP00000412019.1:p.Asp45Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.122A>G
  hgvsp: ENSP00000411664.2:p.Asp41Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.122A>G
  hgvsp: ENSP00000337367.5:p.Asp41Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.122A>G
  hgvsp: ENSP00000243182.6:p.Asp41Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.122A>G
  hgvsp: ENSP00000360944.3:p.Asp41Gly
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4560
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50678
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp41Gly
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-47770592-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770592
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770592
    reference: chr 1
allele count: 2
allele frequency: 1.660164356271271e-5
allele num: 120470
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.121G>C
  hgvsp: ENSP00000360944.3:p.Asp41His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.121G>C
  hgvsp: ENSP00000337367.5:p.Asp41His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.121G>C
  hgvsp: ENSP00000379523.2:p.Asp41His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.133G>C
  hgvsp: ENSP00000412019.1:p.Asp45His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.121G>C
  hgvsp: ENSP00000411664.2:p.Asp41His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.121G>C
  hgvsp: ENSP00000353544.3:p.Asp41His
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.121G>C
  hgvsp: ENSP00000243182.6:p.Asp41His
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp41His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

1-47770593-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770593
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770593
    reference: chr 1
allele count: 1
allele frequency: 8.297791128001726e-6
allele num: 120514
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.120A>G
  hgvsp: ENST00000371877.3:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.120A>G
  hgvsp: ENST00000447475.2:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.132A>G
  hgvsp: ENST00000413565.1:c.132A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.120A>G
  hgvsp: ENST00000337817.5:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.120A>G
  hgvsp: ENST00000243182.6:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.120A>G
  hgvsp: ENST00000396221.2:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.120A>G
  hgvsp: ENST00000360380.3:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly40Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

1-47770602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770602
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770602
    reference: chr 1
allele count: 1
allele frequency: 8.284592315212168e-6
allele num: 120706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.111G>A
  hgvsp: ENST00000447475.2:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.111G>A
  hgvsp: ENST00000243182.6:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.123G>A
  hgvsp: ENST00000413565.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.111G>A
  hgvsp: ENST00000360380.3:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.111G>A
  hgvsp: ENST00000396221.2:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.111G>A
  hgvsp: ENST00000371877.3:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.111G>A
  hgvsp: ENST00000337817.5:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr37Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-47770603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770603
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770603
    reference: chr 1
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.110C>T
  hgvsp: ENSP00000411664.2:p.Thr37Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.110C>T
  hgvsp: ENSP00000360944.3:p.Thr37Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.110C>T
  hgvsp: ENSP00000379523.2:p.Thr37Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.110C>T
  hgvsp: ENSP00000337367.5:p.Thr37Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.122C>T
  hgvsp: ENSP00000412019.1:p.Thr41Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.110C>T
  hgvsp: ENSP00000243182.6:p.Thr37Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.110C>T
  hgvsp: ENSP00000353544.3:p.Thr37Met
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50929
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4580
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr37Met
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-47770621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770621
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770621
    reference: chr 1
allele count: 18
allele frequency: 1.490979573579842e-4
allele num: 120726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.92G>A
  hgvsp: ENSP00000243182.6:p.Cys31Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.92G>A
  hgvsp: ENSP00000353544.3:p.Cys31Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.104G>A
  hgvsp: ENSP00000412019.1:p.Cys35Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.92G>A
  hgvsp: ENSP00000379523.2:p.Cys31Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.92G>A
  hgvsp: ENSP00000360944.3:p.Cys31Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.92G>A
  hgvsp: ENSP00000337367.5:p.Cys31Tyr
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.92G>A
  hgvsp: ENSP00000411664.2:p.Cys31Tyr
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys31Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

1-47770629-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770629
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770629
    reference: chr 1
allele count: 1
allele frequency: 8.307579835842223e-6
allele num: 120372
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.84A>G
  hgvsp: ENST00000371877.3:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.84A>G
  hgvsp: ENST00000243182.6:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.84A>G
  hgvsp: ENST00000447475.2:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.84A>G
  hgvsp: ENST00000396221.2:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.84A>G
  hgvsp: ENST00000337817.5:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.84A>G
  hgvsp: ENST00000360380.3:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.96A>G
  hgvsp: ENST00000413565.1:c.96A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro28Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-47770654-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770654
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770654
    reference: chr 1
allele count: 1
allele frequency: 8.525876033762469e-6
allele num: 117290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.59G>T
  hgvsp: ENSP00000353544.3:p.Arg20Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.59G>T
  hgvsp: ENSP00000360944.3:p.Arg20Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.59G>T
  hgvsp: ENSP00000243182.6:p.Arg20Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.59G>T
  hgvsp: ENSP00000379523.2:p.Arg20Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.71G>T
  hgvsp: ENSP00000412019.1:p.Arg24Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.59G>T
  hgvsp: ENSP00000337367.5:p.Arg20Met
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.59G>T
  hgvsp: ENSP00000411664.2:p.Arg20Met
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47260
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg20Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-47770658-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770658
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770658
    reference: chr 1
allele count: 1
allele frequency: 8.647227698799765e-6
allele num: 115644
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.55A>G
  hgvsp: ENSP00000360944.3:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.55A>G
  hgvsp: ENSP00000353544.3:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.55A>G
  hgvsp: ENSP00000243182.6:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.55A>G
  hgvsp: ENSP00000411664.2:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.67A>G
  hgvsp: ENSP00000412019.1:p.Ser23Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.55A>G
  hgvsp: ENSP00000337367.5:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.55A>G
  hgvsp: ENSP00000379523.2:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4957
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser19Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-47770659-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47770659
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 47770659
    reference: chr 1
allele count: 1
allele frequency: 8.681309141418526e-6
allele num: 115190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000412019
  ensembl transcript: ENST00000413565
  gene symbol: STIL
  hgvsc: ENST00000413565.1:c.66A>C
  hgvsp: ENST00000413565.1:c.66A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000243182
  ensembl transcript: ENST00000243182
  gene symbol: STIL
  hgvsc: ENST00000243182.6:c.54A>C
  hgvsp: ENST00000243182.6:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000411664
  ensembl transcript: ENST00000447475
  gene symbol: STIL
  hgvsc: ENST00000447475.2:c.54A>C
  hgvsp: ENST00000447475.2:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000353544
  ensembl transcript: ENST00000360380
  gene symbol: STIL
  hgvsc: ENST00000360380.3:c.54A>C
  hgvsp: ENST00000360380.3:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000379523
  ensembl transcript: ENST00000396221
  gene symbol: STIL
  hgvsc: ENST00000396221.2:c.54A>C
  hgvsp: ENST00000396221.2:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000337367
  ensembl transcript: ENST00000337817
  gene symbol: STIL
  hgvsc: ENST00000337817.5:c.54A>C
  hgvsp: ENST00000337817.5:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123473
  ensembl protein: ENSP00000360944
  ensembl transcript: ENST00000371877
  gene symbol: STIL
  hgvsc: ENST00000371877.3:c.54A>C
  hgvsp: ENST00000371877.3:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10879
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4313
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser18Ser
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 2367
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20395
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533272002453235e-5
allele num: 65220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

FS
type: SiteQuality
SIO_000300: 4.023e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.735787e6

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

QD
type: SiteQuality
SIO_000300: 1.431e1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

GenotypeQuality
all individuals: 1407
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5747
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6134
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8498
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3236
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.554798112218144e-5
allele num: 15256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.547e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

QD
type: SiteQuality
SIO_000300: 2.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.423e0

VQSLOD
type: SiteQuality
SIO_000300: -2.205e0

DP
type: SiteQuality
SIO_000300: 1.537441e6

MQ
type: SiteQuality
SIO_000300: 5.425e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.737e0

GenotypeQuality
all individuals: 3311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5402
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.310959622443629e-4
allele num: 15256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.423e0

VQSLOD
type: SiteQuality
SIO_000300: -2.205e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.737e0

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

FS
type: SiteQuality
SIO_000300: 4.547e0

DP
type: SiteQuality
SIO_000300: 1.537441e6

MQ
type: SiteQuality
SIO_000300: 5.425e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 2.98e0

GenotypeQuality
all individuals: 495
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5853
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.457445434586077e-5
allele num: 15486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.319261213720317e-4
allele num: 7580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59230
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.541024e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

QD
type: SiteQuality
SIO_000300: 1.789e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

GenotypeQuality
all individuals: 8592
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3476
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.324247058041354e-5
allele num: 60164
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 1.629396e6

VQSLOD
type: SiteQuality
SIO_000300: -1.821e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

QD
type: SiteQuality
SIO_000300: 1.024e1

GenotypeQuality
all individuals: 5527
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8612
bin: 9.75e1
variant carriers: 12

South Asian
type: Population
allele count: 1
allele frequency: 6.399590426212723e-5
allele num: 15626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.655026314918407e-4
allele num: 60422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.05977108944468e-4
allele num: 9436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.39e0

QD
type: SiteQuality
SIO_000300: 1.271e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

DP
type: SiteQuality
SIO_000300: 1.647301e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8612
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3448
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.279754287176862e-4
allele num: 7814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60870
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

MQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 1.67305e6

GenotypeQuality
all individuals: 3911
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.314456035767511e-5
allele num: 10736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61112
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 1.865e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.48e-1

FS
type: SiteQuality
SIO_000300: 2.126e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

VQSLOD
type: SiteQuality
SIO_000300: -9.471000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.682821e6

GenotypeQuality
all individuals: 2033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4689
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.897990726429675e-4
allele num: 62112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.577916132576451e-4
allele num: 10922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15778
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.254e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.747086e6

FS
type: SiteQuality
SIO_000300: 2.014e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33086
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556517137253681e-5
allele num: 64246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16036
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

DP
type: SiteQuality
SIO_000300: 1.81967e6

VQSLOD
type: SiteQuality
SIO_000300: 5.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.32e-1

FS
type: SiteQuality
SIO_000300: 6.607e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.202e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.064e0

GenotypeQuality
all individuals: 8726
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 894
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64436
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.193887297039159e-4
allele num: 8376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 1.0746e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.82587e6

VQSLOD
type: SiteQuality
SIO_000300: -6.957e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 8.41e0

GenotypeQuality
all individuals: 33550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8726
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5433
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551927493947483e-5
allele num: 64436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

DP
type: SiteQuality
SIO_000300: 1.82587e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

FS
type: SiteQuality
SIO_000300: 1.0746e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.957e-1

QD
type: SiteQuality
SIO_000300: 8.41e0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5517
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8732
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2461
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548275221403357e-5
allele num: 64588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.867e0

FS
type: SiteQuality
SIO_000300: 1.773e0

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 1.83061e6

GenotypeQuality
all individuals: 1835
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8760
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.069273502961849e-5
allele num: 65162
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.264e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 6.458e0

DP
type: SiteQuality
SIO_000300: 1.849594e6

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 34556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8760
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534636751480924e-5
allele num: 65162
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 1.849594e6

FS
type: SiteQuality
SIO_000300: 6.458e0

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
all individuals: 187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.574150937679886e-5
allele num: 66014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.87435e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-2

FS
type: SiteQuality
SIO_000300: 4.957e0

QD
type: SiteQuality
SIO_000300: 1.453e1

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35750
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.823433496389472e-4
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

QD
type: SiteQuality
SIO_000300: 1.337e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.33e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

FS
type: SiteQuality
SIO_000300: 8.519e0

DP
type: SiteQuality
SIO_000300: 1.876776e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.293e0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5992
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8831
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35971
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.557e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.027e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

DP
type: SiteQuality
SIO_000300: 1.880438e6

MQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

FS
type: SiteQuality
SIO_000300: 7.267e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 15

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 10

GenotypeQuality
all individuals: 12111
bin: 6.25e1
variant carriers: 130

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 18

GenotypeQuality
all individuals: 442
bin: 8.25e1
variant carriers: 317

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 38

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 13

GenotypeQuality
all individuals: 128
bin: 2.25e1
variant carriers: 16

GenotypeQuality
all individuals: 408
bin: 7.75e1
variant carriers: 247

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 51

GenotypeQuality
all individuals: 1152
bin: 6.75e1
variant carriers: 182

GenotypeQuality
all individuals: 44552
bin: 9.75e1
variant carriers: 42783

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 82

East Asian
type: Population
allele count: 4745
allele frequency: 5.499536393138619e-1
allele num: 8628
num of homozygotes: 1289

African
type: Population
allele count: 8726
allele frequency: 8.401694588869633e-1
allele num: 10386
num of homozygotes: 3680

Latino
type: Population
allele count: 6312
allele frequency: 5.480118076054871e-1
allele num: 11518
num of homozygotes: 1761

South Asian
type: Population
allele count: 7702
allele frequency: 4.673543689320389e-1
allele num: 16480
num of homozygotes: 1838

European (Non-Finnish)
type: Population
allele count: 30719
allele frequency: 4.62162243485587e-1
allele num: 66468
num of homozygotes: 7072

European (Finnish)
type: Population
allele count: 2294
allele frequency: 3.483146067415731e-1
allele num: 6586
num of homozygotes: 405

Other
type: Population
allele count: 403
allele frequency: 4.467849223946785e-1
allele num: 902
num of homozygotes: 94

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.601e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.49e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

DP
type: SiteQuality
SIO_000300: 3.43427e6

FS
type: SiteQuality
SIO_000300: 1.321e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 2.04e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43434
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6479
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.963023e6

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.392e1

VQSLOD
type: SiteQuality
SIO_000300: 9.03e-1

FS
type: SiteQuality
SIO_000300: 2.46e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43475
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6478
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 8.502000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.142e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

DP
type: SiteQuality
SIO_000300: 1.963147e6

QD
type: SiteQuality
SIO_000300: 1.083e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6473
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 423
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

FS
type: SiteQuality
SIO_000300: 2.729e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.627e0

MQ
type: SiteQuality
SIO_000300: 5.663e1

DP
type: SiteQuality
SIO_000300: 1.964289e6

QD
type: SiteQuality
SIO_000300: 1.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43646
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6515
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.64947216890595e-4
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.84e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

DP
type: SiteQuality
SIO_000300: 1.964826e6

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6467
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6517
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 2.306e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.113e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.964152e6

GenotypeQuality
all individuals: 63
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6418
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.736000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.702e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.967025e6

QD
type: SiteQuality
SIO_000300: 2.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.81e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43572
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6418
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.81e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

DP
type: SiteQuality
SIO_000300: 1.967025e6

QD
type: SiteQuality
SIO_000300: 2.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.702e0

FS
type: SiteQuality
SIO_000300: 9.736000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.83e-1

GenotypeQuality
all individuals: 411
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926782273603083e-4
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.496e0

MQ
type: SiteQuality
SIO_000300: 5.841e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.604e0

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

DP
type: SiteQuality
SIO_000300: 1.962797e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.37e-1

QD
type: SiteQuality
SIO_000300: 1.455e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6375
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 655
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497616263380409e-5
allele num: 66702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.962997e6

MQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.927e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

QD
type: SiteQuality
SIO_000300: 1.511e1

GenotypeQuality
all individuals: 413
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6373
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731301939058172e-4
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

QD
type: SiteQuality
SIO_000300: 1.086e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.962932e6

MQRankSum
type: SiteQuality
SIO_000300: -4.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.7e-1

FS
type: SiteQuality
SIO_000300: 3.134e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

GenotypeQuality
all individuals: 6372
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43888
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6514
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.395e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

QD
type: SiteQuality
SIO_000300: 1.003e1

DP
type: SiteQuality
SIO_000300: 1.962822e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.472e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.88e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

GenotypeQuality
all individuals: 1156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43888
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6372
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.485e1

DP
type: SiteQuality
SIO_000300: 1.962986e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.248e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.38e0

MQRankSum
type: SiteQuality
SIO_000300: -1.212e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.04925502892946e-4
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.963217e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 3.254e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.293e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6370
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6516
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.962933e6

QD
type: SiteQuality
SIO_000300: 1.024e1

VQSLOD
type: SiteQuality
SIO_000300: -9.94e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.197e0

MQRankSum
type: SiteQuality
SIO_000300: -1.055e0

FS
type: SiteQuality
SIO_000300: 3.838e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.44e-1

GenotypeQuality
all individuals: 6513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.624277456647399e-4
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.884e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

FS
type: SiteQuality
SIO_000300: 3.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.039e1

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.963073e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 4.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6510
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.886836027713626e-4
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.962926e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 1.056e1

FS
type: SiteQuality
SIO_000300: 1.107e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

GenotypeQuality
all individuals: 43948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6356
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.45e1

DP
type: SiteQuality
SIO_000300: 1.962654e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.09e0

VQSLOD
type: SiteQuality
SIO_000300: -5.86e-2

FS
type: SiteQuality
SIO_000300: 4.907e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6508
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1147
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.76e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 9.58e0

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

FS
type: SiteQuality
SIO_000300: 1.894e0

DP
type: SiteQuality
SIO_000300: 1.962469e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.43e-1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6357
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

DP
type: SiteQuality
SIO_000300: 1.962469e6

FS
type: SiteQuality
SIO_000300: 1.894e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 9.58e0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6353
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.868e0

QD
type: SiteQuality
SIO_000300: 1.346e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.978e0

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-1

MQ
type: SiteQuality
SIO_000300: 5.814e1

VQSLOD
type: SiteQuality
SIO_000300: -1.901e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.962342e6

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6351
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6502
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.148e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.685e0

QD
type: SiteQuality
SIO_000300: 8.289999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -5.363e-1

DP
type: SiteQuality
SIO_000300: 1.962067e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

GenotypeQuality
all individuals: 541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6348
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43494
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6418
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.029385034837928e-4
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.488e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.094e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

FS
type: SiteQuality
SIO_000300: 7.938e0

DP
type: SiteQuality
SIO_000300: 1.954342e6

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.138e1

MQ
type: SiteQuality
SIO_000300: 5.847e1

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6337
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.03425675880693e-5
allele num: 65914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.485e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

QD
type: SiteQuality
SIO_000300: 1.668e1

DP
type: SiteQuality
SIO_000300: 1.927728e6

FS
type: SiteQuality
SIO_000300: 9.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.049e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5670
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6330
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 288
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6520
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35651
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.155361319709468e-5
allele num: 16246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.525e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.59e-1

DP
type: SiteQuality
SIO_000300: 1.823664e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.366e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.38e0

MQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.34e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
all individuals: 518
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34560
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6328
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7061
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.848428835489834e-4
allele num: 16230
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.162e0

MQRankSum
type: SiteQuality
SIO_000300: -4.223e0

MQ
type: SiteQuality
SIO_000300: 5.332e1

FS
type: SiteQuality
SIO_000300: 1.8697e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

QD
type: SiteQuality
SIO_000300: 1.069e1

DP
type: SiteQuality
SIO_000300: 1.810566e6

VQSLOD
type: SiteQuality
SIO_000300: -1.023e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.214e0

GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6316
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584534938995405e-5
allele num: 63110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.78e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

VQSLOD
type: SiteQuality
SIO_000300: 8.21e-1

DP
type: SiteQuality
SIO_000300: 1.613103e6

GenotypeQuality
all individuals: 6316
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 359
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3667
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.096875655273642e-4
allele num: 9538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16018
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.321e0

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

DP
type: SiteQuality
SIO_000300: 1.463494e6

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

GenotypeQuality
all individuals: 1009
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7559
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5782
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6297
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57404
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.998800719568259e-4
allele num: 10006
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 9.74e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

DP
type: SiteQuality
SIO_000300: 1.372232e6

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

GenotypeQuality
all individuals: 444
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5023
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2136
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6215
bin: 9.75e1
variant carriers: 51

GenotypeQuality
all individuals: 1565
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 829
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2393
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2496
bin: 6.25e1
variant carriers: 3

Latino
type: Population
allele count: 6
allele frequency: 8.280430582390284e-4
allele num: 7246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 55
allele frequency: 1.424870466321244e-2
allele num: 3860
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.012048192771084e-3
allele num: 664
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.280839895013123e-4
allele num: 6096
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.732193348592971e-5
allele num: 14854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.477229561473853e-4
allele num: 47386
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.827e1

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.265e0

VQSLOD
type: SiteQuality
SIO_000300: -2.298e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.971e0

DP
type: SiteQuality
SIO_000300: 1.33407e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 1.9899e1

QD
type: SiteQuality
SIO_000300: 3.94e0

GenotypeQuality
all individuals: 3590
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4974
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2720
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7621
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.984599507819322e-5
allele num: 50388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13924
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 1.110813e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

QD
type: SiteQuality
SIO_000300: 1.483e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

GenotypeQuality
all individuals: 2504
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4994
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2715
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10861
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13920
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.119724e6

QD
type: SiteQuality
SIO_000300: 1.952e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 7538
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2798
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5885
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11523
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.980982567353407e-5
allele num: 50480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8874
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

VQSLOD
type: SiteQuality
SIO_000300: -3.298e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.133e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.128132e6

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 3.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1641
bin: 9.75e1
variant carriers: 126

GenotypeQuality
all individuals: 11768
bin: 2.25e1
variant carriers: 29

GenotypeQuality
all individuals: 3024
bin: 2.5e0
variant carriers: 16

GenotypeQuality
all individuals: 648
bin: 7.25e1
variant carriers: 15

GenotypeQuality
all individuals: 857
bin: 1.75e1
variant carriers: 28

GenotypeQuality
all individuals: 453
bin: 8.25e1
variant carriers: 15

GenotypeQuality
all individuals: 1403
bin: 4.75e1
variant carriers: 28

GenotypeQuality
all individuals: 783
bin: 5.75e1
variant carriers: 27

GenotypeQuality
all individuals: 1512
bin: 4.25e1
variant carriers: 22

GenotypeQuality
all individuals: 2066
bin: 6.75e1
variant carriers: 11

Latino
type: Population
allele count: 6
allele frequency: 7.053844345168116e-4
allele num: 8506
num of homozygotes: 0

African
type: Population
allele count: 80
allele frequency: 1.018589253883372e-2
allele num: 7854
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 2.098805295447207e-3
allele num: 6194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 95
allele frequency: 1.878955696202532e-2
allele num: 5056
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.121492664862555e-5
allele num: 14042
num of homozygotes: 0

Other
type: Population
allele count: 12
allele frequency: 1.724137931034483e-2
allele num: 696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 234
allele frequency: 4.889464666304484e-3
allele num: 47858
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.256e0

QD
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

DP
type: SiteQuality
SIO_000300: 1.222562e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 2.5741e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: -2.858e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

GenotypeQuality
all individuals: 20940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3749
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 565
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 939
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11741
bin: 2.25e1
variant carriers: 4

African
type: Population
allele count: 6
allele frequency: 6.706908115358819e-4
allele num: 8946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 5.217189673829031e-4
allele num: 51752
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.177271e6

FS
type: SiteQuality
SIO_000300: 2.0294e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.654e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 2.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.523e0

MQ
type: SiteQuality
SIO_000300: 5.848e1

GenotypeQuality
all individuals: 738
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4988
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2745
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4019
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.107910480833149e-4
allele num: 9026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.899479542605326e-5
allele num: 52646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: -2.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.041e0

FS
type: SiteQuality
SIO_000300: 1.0819e1

DP
type: SiteQuality
SIO_000300: 1.225578e6

QD
type: SiteQuality
SIO_000300: 7.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

GenotypeQuality
all individuals: 6213
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.674536990522121e-5
allele num: 59718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.255965837729214e-4
allele num: 7962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15184
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.535e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

QD
type: SiteQuality
SIO_000300: 1.311e1

DP
type: SiteQuality
SIO_000300: 1.373892e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4015
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 9.75e1
variant carriers: 11

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.821161901293025e-4
allele num: 10982
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.049484952534841e-4
allele num: 9902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.597065316192702e-4
allele num: 15402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

FS
type: SiteQuality
SIO_000300: 1.377e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

DP
type: SiteQuality
SIO_000300: 1.411267e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

QD
type: SiteQuality
SIO_000300: 1.233e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3814
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.422607578676943e-5
allele num: 15570
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.435168e6

VQSLOD
type: SiteQuality
SIO_000300: -1.436e0

QD
type: SiteQuality
SIO_000300: 1.012e1

MQRankSum
type: SiteQuality
SIO_000300: -1.164e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.02e-1

FS
type: SiteQuality
SIO_000300: 9.119e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48604
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.089948397861756e-5
allele num: 64726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

FS
type: SiteQuality
SIO_000300: 1.383e0

MQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

DP
type: SiteQuality
SIO_000300: 1.483221e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.327e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.204243702692642e-5
allele num: 16118
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.833e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.154e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

DP
type: SiteQuality
SIO_000300: 1.494812e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.226e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4488
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.686168151879117e-5
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.92e-1

FS
type: SiteQuality
SIO_000300: 3.225e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

QD
type: SiteQuality
SIO_000300: 8.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

DP
type: SiteQuality
SIO_000300: 1.502821e6

GenotypeQuality
all individuals: 741
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50376
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.228199459592238e-4
allele num: 16284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.244e0

DP
type: SiteQuality
SIO_000300: 1.509003e6

MQ
type: SiteQuality
SIO_000300: 5.992e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.539e0

QD
type: SiteQuality
SIO_000300: 9.56e0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50639
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.025443983904638e-5
allele num: 66106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 14
allele frequency: 2.125721226844823e-3
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.501e1

FS
type: SiteQuality
SIO_000300: 1.124e0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-1

DP
type: SiteQuality
SIO_000300: 1.513431e6

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.97e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.47e-1

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

DP
type: SiteQuality
SIO_000300: 1.512944e6

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: -3.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-2

GenotypeQuality
all individuals: 1014
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022609116189094e-5
allele num: 66168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

DP
type: SiteQuality
SIO_000300: 1.514009e6

FS
type: SiteQuality
SIO_000300: 1.144e0

MQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.113216774666829e-5
allele num: 16358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66200
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.089e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 1.514342e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.763e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

FS
type: SiteQuality
SIO_000300: 1.378e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.97e0

GenotypeQuality
all individuals: 50839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4572
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508250128201261e-5
allele num: 66302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.321e0

MQ
type: SiteQuality
SIO_000300: 5.861e1

FS
type: SiteQuality
SIO_000300: 5.589e0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 9.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.16e-1

DP
type: SiteQuality
SIO_000300: 1.517931e6

GenotypeQuality
all individuals: 873
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.097560975609756e-5
allele num: 16400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 7.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

QD
type: SiteQuality
SIO_000300: 1.171e1

DP
type: SiteQuality
SIO_000300: 1.518274e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.060606060606061e-4
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.1020258725897e-4
allele num: 16388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.524613899613899e-5
allele num: 66304
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.47e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.801e0

DP
type: SiteQuality
SIO_000300: 1.519952e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.07e-1

QD
type: SiteQuality
SIO_000300: 1.043e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 807
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50176
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.73e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.823e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 2.518e0

DP
type: SiteQuality
SIO_000300: 1.514768e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 816
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4339
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558700667123886e-5
allele num: 64156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.419e0

QD
type: SiteQuality
SIO_000300: 1.031e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.741e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.843e0

DP
type: SiteQuality
SIO_000300: 1.479845e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.991188635137565e-5
allele num: 11122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: -7.536e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

DP
type: SiteQuality
SIO_000300: 1.457903e6

QD
type: SiteQuality
SIO_000300: 1.78e1

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0