1-183536012-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536012
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536012
    reference: chr 1
allele count: 2
allele frequency: 1.648913366091746e-5
allele num: 121292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15687T>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.789+43A>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.924+43A>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.924+43A>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.681+43A>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1098A>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.141+43A>T
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13432
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4611
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

1-183536028-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536028
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536028
    reference: chr 1
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.924+27T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.924+27T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.789+27T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1114T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.141+27T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15703A>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.681+27T>C
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17992
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

1-183536032-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536032
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536032
    reference: chr 1
allele count: 5
allele frequency: 4.120584793393878e-5
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.924+23C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.681+23C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.141+23C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15707G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.924+23C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.789+23C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1118C>T
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17993
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/1-183536034-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536034
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536034
    reference: chr 1
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1120G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.924+21G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.789+21G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.141+21G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.924+21G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15709C>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.681+21G>T
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13522
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18484
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4577
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD

1-183536035-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536035
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536035
    reference: chr 1
allele count: 2
allele frequency: 1.648043772042586e-5
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.141+20T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.924+20T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.789+20T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.681+20T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15710A>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.924+20T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1121T>C
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7311
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-183536037-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536037
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536037
    reference: chr 1
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.789+18C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.141+18C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.924+18C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.681+18C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1123C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15712G>C
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.924+18C>G
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13518
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2892
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-183536038-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536038
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536038
    reference: chr 1
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.681+17G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.789+17G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.141+17G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1124G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.924+17G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.924+17G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15713C>A
  variant of: http://identifiers.org/hgnc/16792
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7308
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

1-183536043-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536043
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536043
    reference: chr 1
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.924+12C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15718G>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.924+12C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.141+12C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.681+12C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.789+12C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1129C>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3320
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4578
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

1-183536047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536047
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536047
    reference: chr 1
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.924+8G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.789+8G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15722C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.681+8G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.141+8G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.924+8G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1133G>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4579
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17995
  bin: 9.75e1
  variant carriers: 2
hgvs: c.924+8G>A
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

1-183536056-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536056
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536056
    reference: chr 1
allele count: 4
allele frequency: 3.295707341188102e-5
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.680A>G
  hgvsp: ENSP00000407217.1:p.Gln227Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.923A>G
  hgvsp: ENSP00000356506.1:p.Gln308Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.923A>G
  hgvsp: ENSP00000356505.3:p.Gln308Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1142A>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.140A>G
  hgvsp: ENSP00000406198.1:p.Gln47Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.788A>G
  hgvsp: ENSP00000399294.1:p.Gln263Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15731T>C
  variant of: http://identifiers.org/hgnc/16792
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln308Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

1-183536061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536061
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536061
    reference: chr 1
allele count: 192
allele frequency: 1.581965592248369e-3
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1147G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.783G>A
  hgvsp: ENST00000413720.1:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.135G>A
  hgvsp: ENST00000419402.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.918G>A
  hgvsp: ENST00000367536.1:c.918G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.918G>A
  hgvsp: ENST00000367535.3:c.918G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.675G>A
  hgvsp: ENST00000418089.1:c.675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15736C>T
  variant of: http://identifiers.org/hgnc/16792
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15534
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 9.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13532
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4577
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3872
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln306Gln
num of homozygotes: 4
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

1-183536064-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536064
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536064
    reference: chr 1
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.672G>C
  hgvsp: ENSP00000407217.1:p.Gln224His
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.915G>C
  hgvsp: ENSP00000356506.1:p.Gln305His
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.915G>C
  hgvsp: ENSP00000356505.3:p.Gln305His
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.132G>C
  hgvsp: ENSP00000406198.1:p.Gln44His
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15739C>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.780G>C
  hgvsp: ENSP00000399294.1:p.Gln260His
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1150G>C
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4583
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln305His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

1-183536069-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536069
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536069
    reference: chr 1
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.775C>G
  hgvsp: ENSP00000399294.1:p.Gln259Glu
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.910C>G
  hgvsp: ENSP00000356505.3:p.Gln304Glu
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.127C>G
  hgvsp: ENSP00000406198.1:p.Gln43Glu
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1155C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15744G>C
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.667C>G
  hgvsp: ENSP00000407217.1:p.Gln223Glu
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.910C>G
  hgvsp: ENSP00000356506.1:p.Gln304Glu
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18632
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln304Glu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

1-183536074-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536074
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536073
    reference: chr 1
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15751delG
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.904delC
  hgvsp: ENSP00000356506.1:p.His302ThrfsTer43
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.121delC
  hgvsp: ENSP00000406198.1:p.His41ThrfsTer43
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1161delC
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.769delC
  hgvsp: ENSP00000399294.1:p.His257ThrfsTer43
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.661delC
  hgvsp: ENSP00000407217.1:p.His221ThrfsTer43
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.904delC
  hgvsp: ENSP00000356505.3:p.His302ThrfsTer43
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4579
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7345
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His302ThrfsTer43
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: TG
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-183536080-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536080
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536080
    reference: chr 1
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.116G>A
  hgvsp: ENSP00000406198.1:p.Arg39Gln
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.764G>A
  hgvsp: ENSP00000399294.1:p.Arg255Gln
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.899G>A
  hgvsp: ENSP00000356505.3:p.Arg300Gln
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.656G>A
  hgvsp: ENSP00000407217.1:p.Arg219Gln
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.899G>A
  hgvsp: ENSP00000356506.1:p.Arg300Gln
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1166G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15755C>T
  variant of: http://identifiers.org/hgnc/16792
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17959
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3883
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg300Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

1-183536081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536081
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536081
    reference: chr 1
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15756G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.898C>T
  hgvsp: ENSP00000356506.1:p.Arg300Trp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.898C>T
  hgvsp: ENSP00000356505.3:p.Arg300Trp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.655C>T
  hgvsp: ENSP00000407217.1:p.Arg219Trp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.115C>T
  hgvsp: ENSP00000406198.1:p.Arg39Trp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1167C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.763C>T
  hgvsp: ENSP00000399294.1:p.Arg255Trp
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17959
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3883
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg300Trp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

1-183536089-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536089
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536089
    reference: chr 1
allele count: 452
allele frequency: 3.724210665084701e-3
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.890T>C
  hgvsp: ENSP00000356505.3:p.Val297Ala
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.890T>C
  hgvsp: ENSP00000356506.1:p.Val297Ala
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.107T>C
  hgvsp: ENSP00000406198.1:p.Val36Ala
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1175T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.755T>C
  hgvsp: ENSP00000399294.1:p.Val252Ala
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.647T>C
  hgvsp: ENSP00000407217.1:p.Val216Ala
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15764A>G
  variant of: http://identifiers.org/hgnc/16792
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13503
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 5.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 15562
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 9.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 5.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 6.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3859
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18130
  bin: 9.75e1
  variant carriers: 445
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val297Ala
num of homozygotes: 7
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

1-183536092-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536092
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536092
    reference: chr 1
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.887C>G
  hgvsp: ENSP00000356506.1:p.Pro296Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.887C>G
  hgvsp: ENSP00000356505.3:p.Pro296Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1178C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.644C>G
  hgvsp: ENSP00000407217.1:p.Pro215Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.104C>G
  hgvsp: ENSP00000406198.1:p.Pro35Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.752C>G
  hgvsp: ENSP00000399294.1:p.Pro251Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15767G>C
  variant of: http://identifiers.org/hgnc/16792
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18739
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro296Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

1-183536092-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536092
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536092
    reference: chr 1
allele count: 3
allele frequency: 2.471902705909495e-5
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1178C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.104C>A
  hgvsp: ENSP00000406198.1:p.Pro35Gln
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15767G>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.752C>A
  hgvsp: ENSP00000399294.1:p.Pro251Gln
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.644C>A
  hgvsp: ENSP00000407217.1:p.Pro215Gln
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.887C>A
  hgvsp: ENSP00000356506.1:p.Pro296Gln
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.887C>A
  hgvsp: ENSP00000356505.3:p.Pro296Gln
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3886
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro296Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

1-183536097-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536097
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536097
    reference: chr 1
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15772A>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.639T>C
  hgvsp: ENST00000418089.1:c.639T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.882T>C
  hgvsp: ENST00000367536.1:c.882T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.99T>C
  hgvsp: ENST00000419402.1:c.99T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.747T>C
  hgvsp: ENST00000413720.1:c.747T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.882T>C
  hgvsp: ENST00000367535.3:c.882T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1183T>C
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18740
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4589
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu294Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

1-183536103-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536103
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536103
    reference: chr 1
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.876C>G
  hgvsp: ENSP00000356506.1:p.Asn292Lys
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.876C>G
  hgvsp: ENSP00000356505.3:p.Asn292Lys
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.741C>G
  hgvsp: ENSP00000399294.1:p.Asn247Lys
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1189C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15778G>C
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.93C>G
  hgvsp: ENSP00000406198.1:p.Asn31Lys
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.633C>G
  hgvsp: ENSP00000407217.1:p.Asn211Lys
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3887
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7338
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn292Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

1-183536134-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536134
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536134
    reference: chr 1
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15809G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1220C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.721-11C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.856-11C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.73-11C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.613-11C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.856-11C>T
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17803
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

1-183536136-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536136
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536136
    reference: chr 1
allele count: 3
allele frequency: 2.474022761009401e-5
allele num: 121260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.613-13T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1222T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15811A>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.856-13T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.721-13T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.73-13T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.856-13T>C
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-183536146-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536146
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536145
    reference: chr 1
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.613-24delT
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15822delA
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.721-24delT
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.856-24delT
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.856-24delT
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1233delT
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.73-24delT
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15149
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17800
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3212
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17088
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: CA
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-183536148-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536148
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536148
    reference: chr 1
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1234C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.613-25C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.856-25C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.721-25C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.856-25C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15823G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.73-25C>T
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6845
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4527
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS

1-183536153-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536153
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536154
    reference: chr 1
allele count: 3
allele frequency: 2.478519497686715e-5
allele num: 121040
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.721-31dupT
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1240dupT
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.856-31dupT
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.613-31dupT
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15834dupA
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.856-31dupT
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.73-31dupT
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3832
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum

1-183536165-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536165
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536165
    reference: chr 1
allele count: 1
allele frequency: 8.279516476237788e-6
allele num: 120780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1251T>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.73-42T>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.613-42T>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.856-42T>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15840A>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.856-42T>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.721-42T>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11835
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17788
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-183536291-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536291
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536291
    reference: chr 1
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15966C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1377G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+48G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+48G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+48G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+48G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+48G>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9016
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45569
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

1-183536292-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536292
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536292
    reference: chr 1
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+47A>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+47A>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1378A>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+47A>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+47A>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15967T>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+47A>C
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

1-183536295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536295
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536295
    reference: chr 1
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1381G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+44G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+44G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+44G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+44G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15970C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+44G>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
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genotype depth: GenotypeDepth
  all individuals: 2397
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
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genotype depth: GenotypeDepth
  all individuals: 9832
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 45600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 28
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
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genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

1-183536303-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536303
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536303
    reference: chr 1
allele count: 1
allele frequency: 8.258183860205463e-6
allele num: 121092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+36G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+36G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+36G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15978C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1389G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+36G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+36G>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

1-183536305-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536305
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536305
    reference: chr 1
allele count: 14
allele frequency: 1.156088457282531e-4
allele num: 121098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+34A>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+34A>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+34A>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+34A>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1391A>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+34A>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15980T>C
  variant of: http://identifiers.org/hgnc/16792
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45612
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

1-183536306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536306
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536306
    reference: chr 1
allele count: 1
allele frequency: 8.259002312520648e-6
allele num: 121080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1392C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+33C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15981G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+33C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+33C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+33C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+33C>T
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

1-183536312-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536312
    reference: chr 1
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+27G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15987C>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1398G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+27G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+27G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+27G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+27G>C
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

1-183536312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536312
    reference: chr 1
allele count: 4
allele frequency: 3.303491790822899e-5
allele num: 121084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+27G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+27G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1398G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+27G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+27G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15987C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+27G>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9020
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45633
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

1-183536316-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536316
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536316
    reference: chr 1
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+23G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+23G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+23G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+23G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+23G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15991C>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1402G>C
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-183536318-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536318
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536317
    reference: chr 1
allele count: 10
allele frequency: 8.25845665961945e-5
allele num: 121088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15994delG
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1405delC
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+20delC
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+20delC
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+20delC
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+20delC
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+20delC
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: AG
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

1-183536319-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536319
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536319
    reference: chr 1
allele count: 2
allele frequency: 1.652018766933192e-5
allele num: 121064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+20C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1405C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15994G>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+20C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+20C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+20C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+20C>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9019
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-183536320-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536320
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536320
    reference: chr 1
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+19G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+19G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+19G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+19G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+19G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15995C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1406G>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14082
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

1-183536323-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536323
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536323
    reference: chr 1
allele count: 1
allele frequency: 8.257774694875225e-6
allele num: 121098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+16G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+16G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15998C>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+16G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+16G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+16G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1409G>C
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45673
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

1-183536324-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536324
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536324
    reference: chr 1
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+15A>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+15A>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1410A>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+15A>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+15999T>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+15A>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+15A>T
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45683
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

1-183536329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536329
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536329
    reference: chr 1
allele count: 1
allele frequency: 8.257365570088519e-6
allele num: 121104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+10G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1415G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+10G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16004C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+10G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+10G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+10G>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

1-183536331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536331
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536331
    reference: chr 1
allele count: 2
allele frequency: 1.651582215762701e-5
allele num: 121096
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.855+8G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1417G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.612+8G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.720+8G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.72+8G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16006C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.855+8G>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
hgvs: c.855+8G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/1-183536344-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536344
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536344
    reference: chr 1
allele count: 2
allele frequency: 1.65128222064433e-5
allele num: 121118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.607G>T
  hgvsp: ENSP00000407217.1:p.Gly203Trp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.850G>T
  hgvsp: ENSP00000356506.1:p.Gly284Trp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.67G>T
  hgvsp: ENSP00000406198.1:p.Gly23Trp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16019C>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1430G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.715G>T
  hgvsp: ENSP00000399294.1:p.Gly239Trp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.850G>T
  hgvsp: ENSP00000356505.3:p.Gly284Trp
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly284Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

1-183536345-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536345
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536345
    reference: chr 1
allele count: 3
allele frequency: 2.476923330966496e-5
allele num: 121118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.714C>T
  hgvsp: ENST00000413720.1:c.714C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.849C>T
  hgvsp: ENST00000367536.1:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1431C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16020G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.66C>T
  hgvsp: ENST00000419402.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.606C>T
  hgvsp: ENST00000418089.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.849C>T
  hgvsp: ENST00000367535.3:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn283Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

1-183536354-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536354
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536354
    reference: chr 1
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.597C>G
  hgvsp: ENST00000418089.1:c.597C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.840C>G
  hgvsp: ENST00000367535.3:c.840C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.57C>G
  hgvsp: ENST00000419402.1:c.57C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16029G>C
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.840C>G
  hgvsp: ENST00000367536.1:c.840C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.705C>G
  hgvsp: ENST00000413720.1:c.705C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1440C>G
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val280Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

1-183536358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536358
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536358
    reference: chr 1
allele count: 277
allele frequency: 2.286535032688371e-3
allele num: 121144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16033G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.593C>T
  hgvsp: ENSP00000407217.1:p.Thr198Met
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.836C>T
  hgvsp: ENSP00000356506.1:p.Thr279Met
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.701C>T
  hgvsp: ENSP00000399294.1:p.Thr234Met
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.53C>T
  hgvsp: ENSP00000406198.1:p.Thr18Met
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1444C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.836C>T
  hgvsp: ENSP00000356505.3:p.Thr279Met
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr279Met
num of homozygotes: 2
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

1-183536358-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536358
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536358
    reference: chr 1
allele count: 1
allele frequency: 8.254639107178234e-6
allele num: 121144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.53C>A
  hgvsp: ENSP00000406198.1:p.Thr18Lys
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16033G>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.836C>A
  hgvsp: ENSP00000356505.3:p.Thr279Lys
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.836C>A
  hgvsp: ENSP00000356506.1:p.Thr279Lys
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.593C>A
  hgvsp: ENSP00000407217.1:p.Thr198Lys
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1444C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.701C>A
  hgvsp: ENSP00000399294.1:p.Thr234Lys
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45794
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9034
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr279Lys
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

1-183536373-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536373
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536373
    reference: chr 1
allele count: 4
allele frequency: 3.3003300330033e-5
allele num: 121200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1459A>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.821A>G
  hgvsp: ENSP00000356505.3:p.Asn274Ser
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16048T>C
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.821A>G
  hgvsp: ENSP00000356506.1:p.Asn274Ser
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.578A>G
  hgvsp: ENSP00000407217.1:p.Asn193Ser
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.686A>G
  hgvsp: ENSP00000399294.1:p.Asn229Ser
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.38A>G
  hgvsp: ENSP00000406198.1:p.Asn13Ser
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9083
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn274Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-183536374-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536374
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536374
    reference: chr 1
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.685A>G
  hgvsp: ENSP00000399294.1:p.Asn229Asp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1460A>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.577A>G
  hgvsp: ENSP00000407217.1:p.Asn193Asp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16049T>C
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.820A>G
  hgvsp: ENSP00000356506.1:p.Asn274Asp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.37A>G
  hgvsp: ENSP00000406198.1:p.Asn13Asp
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.820A>G
  hgvsp: ENSP00000356505.3:p.Asn274Asp
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn274Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-183536377-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536377
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536374
    reference: chr 1
allele count: 2
allele frequency: 1.65000165000165e-5
allele num: 121212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.814_816delAAG
  hgvsp: ENSP00000356506.1:p.Lys272del
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.679_681delAAG
  hgvsp: ENSP00000399294.1:p.Lys227del
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.814_816delAAG
  hgvsp: ENSP00000356505.3:p.Lys272del
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.571_573delAAG
  hgvsp: ENSP00000407217.1:p.Lys191del
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1466_-123-1464delAAG
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16057_233+16059delTTC
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.31_33delAAG
  hgvsp: ENSP00000406198.1:p.Lys11del
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10179
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9085
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys272del
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: CCTT
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

1-183536378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536378
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536378
    reference: chr 1
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.573G>A
  hgvsp: ENST00000418089.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.33G>A
  hgvsp: ENST00000419402.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1464G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.816G>A
  hgvsp: ENST00000367536.1:c.816G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.681G>A
  hgvsp: ENST00000413720.1:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16053C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.816G>A
  hgvsp: ENST00000367535.3:c.816G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys272Lys
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

1-183536389-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536389
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536389
    reference: chr 1
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.805G>A
  hgvsp: ENSP00000356506.1:p.Val269Ile
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.22G>A
  hgvsp: ENSP00000406198.1:p.Val8Ile
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.805G>A
  hgvsp: ENSP00000356505.3:p.Val269Ile
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1475G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.562G>A
  hgvsp: ENSP00000407217.1:p.Val188Ile
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16064C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.670G>A
  hgvsp: ENSP00000399294.1:p.Val224Ile
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46219
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val269Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-183536397-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536397
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536397
    reference: chr 1
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.797T>C
  hgvsp: ENSP00000356506.1:p.Ile266Thr
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16072A>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1483T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.14T>C
  hgvsp: ENSP00000406198.1:p.Ile5Thr
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.554T>C
  hgvsp: ENSP00000407217.1:p.Ile185Thr
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.797T>C
  hgvsp: ENSP00000356505.3:p.Ile266Thr
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.662T>C
  hgvsp: ENSP00000399294.1:p.Ile221Thr
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile266Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

1-183536399-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536399
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536399
    reference: chr 1
allele count: 2
allele frequency: 1.649076517150396e-5
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.795C>T
  hgvsp: ENST00000367536.1:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16074G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.795C>T
  hgvsp: ENST00000367535.3:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.660C>T
  hgvsp: ENST00000413720.1:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.552C>T
  hgvsp: ENST00000418089.1:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.12C>T
  hgvsp: ENST00000419402.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1485C>T
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn265Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

1-183536410-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536410
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536410
    reference: chr 1
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1496A>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.784A>T
  hgvsp: ENSP00000356506.1:p.Met262Leu
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.1A>T
  hgvsp: ENSP00000406198.1:p.Met1?
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.784A>T
  hgvsp: ENSP00000356505.3:p.Met262Leu
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.541A>T
  hgvsp: ENSP00000407217.1:p.Met181Leu
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.649A>T
  hgvsp: ENSP00000399294.1:p.Met217Leu
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16085T>A
  variant of: http://identifiers.org/hgnc/16792
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46280
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

1-183536417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536417
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536417
    reference: chr 1
allele count: 2
allele frequency: 1.648505629646725e-5
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1503C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.534C>T
  hgvsp: ENST00000418089.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16092G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.777C>T
  hgvsp: ENST00000367535.3:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.642C>T
  hgvsp: ENST00000413720.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-7C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.777C>T
  hgvsp: ENST00000367536.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu259Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

1-183536435-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536435
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536435
    reference: chr 1
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.624T>C
  hgvsp: ENST00000413720.1:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.516T>C
  hgvsp: ENST00000418089.1:c.516T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.759T>C
  hgvsp: ENST00000367535.3:c.759T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1521T>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.759T>C
  hgvsp: ENST00000367536.1:c.759T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16110A>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-25T>C
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro253Pro
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-183536452-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536452
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536452
    reference: chr 1
allele count: 2
allele frequency: 1.648723063986942e-5
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.742C>T
  hgvsp: ENST00000367536.1:c.742C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.607C>T
  hgvsp: ENST00000413720.1:c.607C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1538C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16127G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.742C>T
  hgvsp: ENST00000367535.3:c.742C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.499C>T
  hgvsp: ENST00000418089.1:c.499C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu248Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/1-183536457-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536457
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536457
    reference: chr 1
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1543G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.737G>T
  hgvsp: ENSP00000356506.1:p.Arg246Leu
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.737G>T
  hgvsp: ENSP00000356505.3:p.Arg246Leu
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.602G>T
  hgvsp: ENSP00000399294.1:p.Arg201Leu
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-47G>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16132C>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.494G>T
  hgvsp: ENSP00000407217.1:p.Arg165Leu
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9085
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg246Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

1-183536457-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536457
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536457
    reference: chr 1
allele count: 4
allele frequency: 3.297881111385935e-5
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.494G>A
  hgvsp: ENSP00000407217.1:p.Arg165His
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16132C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1543G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.737G>A
  hgvsp: ENSP00000356506.1:p.Arg246His
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.737G>A
  hgvsp: ENSP00000356505.3:p.Arg246His
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.602G>A
  hgvsp: ENSP00000399294.1:p.Arg201His
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9085
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg246His
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

1-183536458-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536458
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536458
    reference: chr 1
allele count: 3
allele frequency: 2.473451619286327e-5
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.736C>T
  hgvsp: ENSP00000356506.1:p.Arg246Cys
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.601C>T
  hgvsp: ENSP00000399294.1:p.Arg201Cys
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1544C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.736C>T
  hgvsp: ENSP00000356505.3:p.Arg246Cys
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16133G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.493C>T
  hgvsp: ENSP00000407217.1:p.Arg165Cys
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg246Cys
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

1-183536459-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536459
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536459
    reference: chr 1
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.492C>T
  hgvsp: ENST00000418089.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.735C>T
  hgvsp: ENST00000367535.3:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16134G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.600C>T
  hgvsp: ENST00000413720.1:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1545C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.735C>T
  hgvsp: ENST00000367536.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His245His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

1-183536461-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536461
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536461
    reference: chr 1
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.490C>T
  hgvsp: ENSP00000407217.1:p.His164Tyr
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1547C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.733C>T
  hgvsp: ENSP00000356505.3:p.His245Tyr
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.598C>T
  hgvsp: ENSP00000399294.1:p.His200Tyr
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.733C>T
  hgvsp: ENSP00000356506.1:p.His245Tyr
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16136G>A
  variant of: http://identifiers.org/hgnc/16792
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His245Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD

1-183536470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536470
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536470
    reference: chr 1
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16145C>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.724G>A
  hgvsp: ENSP00000356505.3:p.Gly242Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.481G>A
  hgvsp: ENSP00000407217.1:p.Gly161Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-60G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.589G>A
  hgvsp: ENSP00000399294.1:p.Gly197Arg
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1556G>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.724G>A
  hgvsp: ENSP00000356506.1:p.Gly242Arg
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly242Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS

1-183536476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536476
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536476
    reference: chr 1
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.475C>T
  hgvsp: ENST00000418089.1:c.475C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-66C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.718C>T
  hgvsp: ENST00000367536.1:c.718C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16151G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.583C>T
  hgvsp: ENST00000413720.1:c.583C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1562C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.718C>T
  hgvsp: ENST00000367535.3:c.718C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu240Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

1-183536478-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536478
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536478
    reference: chr 1
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.716C>G
  hgvsp: ENSP00000356505.3:p.Ala239Gly
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.581C>G
  hgvsp: ENSP00000399294.1:p.Ala194Gly
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.473C>G
  hgvsp: ENSP00000407217.1:p.Ala158Gly
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1564C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-68C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.716C>G
  hgvsp: ENSP00000356506.1:p.Ala239Gly
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16153G>C
  variant of: http://identifiers.org/hgnc/16792
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala239Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

1-183536486-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536486
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536486
    reference: chr 1
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-70-6C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.471-6C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1572C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16161G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.579-6C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.714-6C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.714-6C>T
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46076
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
hgvs: c.714-6C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

1-183536486-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536486
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536486
    reference: chr 1
allele count: 10
allele frequency: 8.256820133430213e-5
allele num: 121112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1572C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-70-6C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.714-6C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.714-6C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.471-6C>G
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16161G>C
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.579-6C>G
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46076
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9031
  bin: 6.75e1
  variant carriers: 0
hgvs: c.714-6C>G
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-183536493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536493
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536493
    reference: chr 1
allele count: 16
allele frequency: 1.322008130350002e-4
allele num: 121028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.714-13C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-70-13C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.471-13C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.579-13C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1579C>T
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16168G>A
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.714-13C>T
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45987
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-183536500-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536500
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536500
    reference: chr 1
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-70-20C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.471-20C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.714-20C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.579-20C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1586C>A
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16175G>T
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.714-20C>A
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10098
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

1-183536510-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 183536510
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 183536510
    reference: chr 1
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000399294
  ensembl transcript: ENST00000413720
  gene symbol: NCF2
  hgvsc: ENST00000413720.1:c.579-30G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000407217
  ensembl transcript: ENST00000418089
  gene symbol: NCF2
  hgvsc: ENST00000418089.1:c.471-30G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356505
  ensembl transcript: ENST00000367535
  gene symbol: NCF2
  hgvsc: ENST00000367535.3:c.714-30G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116698
  ensembl transcript: ENST00000495321
  gene symbol: SMG7
  hgvsc: ENST00000495321.1:n.233+16185C>G
  variant of: http://identifiers.org/hgnc/16792
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000406198
  ensembl transcript: ENST00000419402
  gene symbol: NCF2
  hgvsc: ENST00000419402.1:c.-70-30G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000397228
  ensembl transcript: ENST00000420553
  gene symbol: NCF2
  hgvsc: ENST00000420553.1:c.-123-1596G>C
  variant of: http://identifiers.org/hgnc/7661
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116701
  ensembl protein: ENSP00000356506
  ensembl transcript: ENST00000367536
  gene symbol: NCF2
  hgvsc: ENST00000367536.1:c.714-30G>C
  variant of: http://identifiers.org/hgnc/7661
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 93
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17994
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.22e-1

DP
type: SiteQuality
SIO_000300: 2.376023e6

QD
type: SiteQuality
SIO_000300: 1.535e1

FS
type: SiteQuality
SIO_000300: 5.435e0

MQRankSum
type: SiteQuality
SIO_000300: -3.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2896
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3887
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 2.725e0

DP
type: SiteQuality
SIO_000300: 2.381543e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.08e0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
all individuals: 7303
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4580
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.885170225043277e-4
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.252e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.093e0

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

DP
type: SiteQuality
SIO_000300: 2.382341e6

QD
type: SiteQuality
SIO_000300: 1.244e1

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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South Asian
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European (Finnish)
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Other
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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Latino
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East Asian
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FS
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BaseQRankSum
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MQ
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DP
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Finnish)
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Latino
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Other
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MQRankSum
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FS
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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South Asian
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FS
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 11572
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East Asian
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European (Finnish)
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Other
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African
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European (Non-Finnish)
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South Asian
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MQRankSum
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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South Asian
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Other
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Latino
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European (Finnish)
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FS
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Latino
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South Asian
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Other
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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DP
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FS
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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South Asian
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European (Finnish)
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Latino
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ClippingRankSum
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QD
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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European (Non-Finnish)
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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FS
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 66718
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South Asian
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InbreedingCoeff
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VQSLOD
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498890820792613e-5
allele num: 66716
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African
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East Asian
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Latino
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South Asian
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European (Finnish)
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66714
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European (Finnish)
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Other
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African
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East Asian
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South Asian
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Latino
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

East Asian
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South Asian
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African
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Other
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ReadPosRankSum
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FS
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ClippingRankSum
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DP
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.349082623815805e-4
allele num: 66712
num of homozygotes: 0

East Asian
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Latino
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allele frequency: 1.469317199654278e-3
allele num: 11570
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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African
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allele count: 424
allele frequency: 4.075355632449058e-2
allele num: 10404
num of homozygotes: 7

Other
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allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.25e-1

MQ
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -9.1e-2

VQSLOD
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BaseQRankSum
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MQRankSum
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SIO_000300: 3.88e-1

DP
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SIO_000300: 2.403206e6

ReadPosRankSum
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SIO_000300: 5.78e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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African
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Other
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FS
type: SiteQuality
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MQRankSum
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DP
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QD
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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VQSLOD
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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MQ
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 1.49902563333833e-5
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num of homozygotes: 0

African
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Latino
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Other
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European (Finnish)
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InbreedingCoeff
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MQ
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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MQ
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Latino
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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FS
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.818181818181818e-4
allele num: 16500
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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DP
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.413e-1

BaseQRankSum
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SIO_000300: 1.93e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 904
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66560
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East Asian
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allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 1.163061177017911e-4
allele num: 8598
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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Latino
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num of homozygotes: 0

MQ
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ReadPosRankSum
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DP
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VQSLOD
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.381e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 2.89073039121218e-4
allele num: 10378
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -5.0e-2

InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.083e1

DP
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506432466632521e-5
allele num: 66382
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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VQSLOD
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SIO_000300: -1.336e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-1

DP
type: SiteQuality
SIO_000300: 2.295217e6

QD
type: SiteQuality
SIO_000300: 1.809e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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Other
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Latino
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Other
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European (Non-Finnish)
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allele num: 66574
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African
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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FS
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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allele frequency: 9.517217511680222e-4
allele num: 11558
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African
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Other
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VQSLOD
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ClippingRankSum
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DP
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MQ
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QD
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MQRankSum
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SIO_000300: 1.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e0

FS
type: SiteQuality
SIO_000300: 2.124e0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9022
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.192e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 1.345e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.252e0

VQSLOD
type: SiteQuality
SIO_000300: 6.81e-1

DP
type: SiteQuality
SIO_000300: 1.754452e6

GenotypeQuality
all individuals: 45633
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9020
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.923e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.754424e6

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 576
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.880481179666278e-4
allele num: 10308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 2.923e0

DP
type: SiteQuality
SIO_000300: 1.754424e6

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1841
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.697439875872769e-5
allele num: 10312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 7.339e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.555e1

DP
type: SiteQuality
SIO_000300: 1.754324e6

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 9019
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.103727714748784e-4
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819063788503517e-4
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.58e0

DP
type: SiteQuality
SIO_000300: 1.754725e6

QD
type: SiteQuality
SIO_000300: 1.556e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

FS
type: SiteQuality
SIO_000300: 1.349e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.043e0

MQ
type: SiteQuality
SIO_000300: 6.022e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.8e-1

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 45657
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213150551983501e-4
allele num: 16486
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.366e1

FS
type: SiteQuality
SIO_000300: 2.122e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.6e0

DP
type: SiteQuality
SIO_000300: 1.753366e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.145e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.214e0

DP
type: SiteQuality
SIO_000300: 1.754734e6

FS
type: SiteQuality
SIO_000300: 7.836e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.278e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.695559433779329e-5
allele num: 10314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.75352e6

VQSLOD
type: SiteQuality
SIO_000300: -2.285e0

FS
type: SiteQuality
SIO_000300: 1.5811e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.207e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.753e0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.523e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.603e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.753472e6

VQSLOD
type: SiteQuality
SIO_000300: -9.964e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.25e1
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GenotypeQuality
all individuals: 1105
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45691
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

FS
type: SiteQuality
SIO_000300: 2.431e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

QD
type: SiteQuality
SIO_000300: 1.443e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.36e-1

MQ
type: SiteQuality
SIO_000300: 5.902e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.701e0

DP
type: SiteQuality
SIO_000300: 1.75351e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00390507659958e-5
allele num: 66580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.237e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.845e0

FS
type: SiteQuality
SIO_000300: 9.83e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.293e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

DP
type: SiteQuality
SIO_000300: 1.753625e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

GenotypeQuality
all individuals: 183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003453972067878e-5
allele num: 66590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-1

QD
type: SiteQuality
SIO_000300: 1.447e1

DP
type: SiteQuality
SIO_000300: 1.753882e6

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

FS
type: SiteQuality
SIO_000300: 1.887e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.218e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 1.753928e6

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.95e0

QD
type: SiteQuality
SIO_000300: 1.487e1

FS
type: SiteQuality
SIO_000300: 1.459e0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.753798e6

GenotypeQuality
all individuals: 1543
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 45794
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variant carriers: 0

GenotypeQuality
all individuals: 578
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 9034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 9.75e1
variant carriers: 275

South Asian
type: Population
allele count: 8
allele frequency: 4.849072614862408e-4
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 48
allele frequency: 7.206990781057626e-4
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.056411143796505e-4
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 213
allele frequency: 2.465848576059273e-2
allele num: 8638
num of homozygotes: 2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e0

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

FS
type: SiteQuality
SIO_000300: 6.24e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.351e1

DP
type: SiteQuality
SIO_000300: 1.788506e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 178
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variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.351e1

FS
type: SiteQuality
SIO_000300: 6.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.788506e6

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46104
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 831
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.595604775912787e-4
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.389e1

DP
type: SiteQuality
SIO_000300: 1.738091e6

VQSLOD
type: SiteQuality
SIO_000300: 8.87e-1

FS
type: SiteQuality
SIO_000300: 2.225e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.5e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.517e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.36e-1

FS
type: SiteQuality
SIO_000300: 4.774e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.737488e6

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 580
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GenotypeQuality
all individuals: 178
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GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001200480192077e-5
allele num: 66640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.916e0

MQRankSum
type: SiteQuality
SIO_000300: -1.444e0

QD
type: SiteQuality
SIO_000300: 1.804e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 5.666e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.737769e6

GenotypeQuality
all individuals: 580
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.012e0

DP
type: SiteQuality
SIO_000300: 1.737493e6

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.43e1

VQSLOD
type: SiteQuality
SIO_000300: -9.900000000000001e-3

InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.06e-1

FS
type: SiteQuality
SIO_000300: 2.501e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.037e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 823
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.45e-1

InbreedingCoeff
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SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 6.786e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

DP
type: SiteQuality
SIO_000300: 1.73853e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

QD
type: SiteQuality
SIO_000300: 1.084e1

GenotypeQuality
all individuals: 1553
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.023e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 6.027e0

InbreedingCoeff
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.549e1

MQRankSum
type: SiteQuality
SIO_000300: -1.327e0

DP
type: SiteQuality
SIO_000300: 1.738817e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999310158663508e-5
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.174e0

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.878e0

QD
type: SiteQuality
SIO_000300: 1.274e1

DP
type: SiteQuality
SIO_000300: 1.739091e6

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: -2.683e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

MQRankSum
type: SiteQuality
SIO_000300: -9.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

QD
type: SiteQuality
SIO_000300: 1.5e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.233e0

DP
type: SiteQuality
SIO_000300: 1.739033e6

FS
type: SiteQuality
SIO_000300: 3.561e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 168
bin: 8.75e1
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GenotypeQuality
all individuals: 177
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variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.347e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.739438e6

MQ
type: SiteQuality
SIO_000300: 6.003e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.113e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.04e0

VQSLOD
type: SiteQuality
SIO_000300: 4.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
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QD
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MQ
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
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African
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South Asian
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Latino
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num of homozygotes: 0

QD
type: SiteQuality
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000030000300003e-5
allele num: 66666
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.134e1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.7384e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

QD
type: SiteQuality
SIO_000300: 1.263e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

DP
type: SiteQuality
SIO_000300: 1.737493e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 1.0823e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.38e-1

DP
type: SiteQuality
SIO_000300: 1.736542e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.062e0

QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.075e1

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.252000000000001e0

DP
type: SiteQuality
SIO_000300: 1.736499e6

FS
type: SiteQuality
SIO_000300: 1.0012e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: -5.038e-1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 16
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.735307e6

VQSLOD
type: SiteQuality
SIO_000300: -7.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.545e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

QD
type: SiteQuality
SIO_000300: 1.15e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.081e0

FS
type: SiteQuality
SIO_000300: 8.382999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 46068
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GenotypeQuality
all individuals: 9038
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501095799933952e-5
allele num: 66618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.186e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.085e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

DP
type: SiteQuality
SIO_000300: 1.733987e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1844
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.574e0

DP
type: SiteQuality
SIO_000300: 1.733802e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

QD
type: SiteQuality
SIO_000300: 1.372e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.9e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.734021e6

FS
type: SiteQuality
SIO_000300: 6.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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East Asian
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allele count: 10
allele frequency: 1.160362032954282e-3
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.312e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.404713237946375e-4
allele num: 66536
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

FS
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.124e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9007
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.286e0

QD
type: SiteQuality
SIO_000300: 6.84e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.441e0

DP
type: SiteQuality
SIO_000300: 1.726966e6