1-32542800-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542800
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542800
    reference: chr 1
allele count: 12
allele frequency: 9.885167306456661e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.690C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1377C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.471C>T
  hgvsp: ENST00000336294.5:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.889C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.126C>T
  hgvsp: ENST00000427288.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.244C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.581C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1377C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.496C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.387C>T
  hgvsp: ENST00000438825.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.633C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+353C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser157Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

1-32542812-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542812
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542812
    reference: chr 1
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.483C>G
  hgvsp: ENSP00000338165.5:p.Phe161Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1389C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.508C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.901C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.256C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.138C>G
  hgvsp: ENSP00000391719.1:p.Phe46Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1389C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.399C>G
  hgvsp: ENSP00000414616.1:p.Phe133Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.702C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+365C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.593C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.645C>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe161Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

1-32542815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542815
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542815
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.904C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1392C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.402C>T
  hgvsp: ENST00000438825.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.259C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.486C>T
  hgvsp: ENST00000336294.5:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.511C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.705C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.141C>T
  hgvsp: ENST00000427288.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.648C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.596C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+368C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1392C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu162Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-32542819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542819
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542819
    reference: chr 1
allele count: 20
allele frequency: 1.647283629295292e-4
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.652C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.600C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1396C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.406C>T
  hgvsp: ENSP00000414616.1:p.Arg136Cys
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1396C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.490C>T
  hgvsp: ENSP00000338165.5:p.Arg164Cys
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.908C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+372C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.263C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.145C>T
  hgvsp: ENSP00000391719.1:p.Arg49Cys
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.515C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.709C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg164Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

1-32542820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542820
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542820
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.491G>A
  hgvsp: ENSP00000338165.5:p.Arg164His
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.516G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.407G>A
  hgvsp: ENSP00000414616.1:p.Arg136His
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1397G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+373G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.909G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.653G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.146G>A
  hgvsp: ENSP00000391719.1:p.Arg49His
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.601G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1397G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.710G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.264G>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg164His
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

1-32542821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542821
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542821
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+374C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.602C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.654C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.492C>T
  hgvsp: ENST00000336294.5:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.517C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1398C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.711C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.265C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1398C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.147C>T
  hgvsp: ENST00000427288.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.408C>T
  hgvsp: ENST00000438825.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.910C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg164Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

1-32542827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542827
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542827
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.660C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.523C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1404C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.608C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.153C>T
  hgvsp: ENST00000427288.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.271C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.498C>T
  hgvsp: ENST00000336294.5:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.414C>T
  hgvsp: ENST00000438825.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1404C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+380C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.916C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.717C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr166Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-32542828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542828
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542828
    reference: chr 1
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+381G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.154G>A
  hgvsp: ENSP00000391719.1:p.Val52Ile
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.415G>A
  hgvsp: ENSP00000414616.1:p.Val139Ile
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.499G>A
  hgvsp: ENSP00000338165.5:p.Val167Ile
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.272G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.917G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.609G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.718G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1405G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1405G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.524G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.661G>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val167Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

1-32542831-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542831
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542831
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+384C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.920C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.502C>G
  hgvsp: ENSP00000338165.5:p.Leu168Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.527C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.721C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.157C>G
  hgvsp: ENSP00000391719.1:p.Leu53Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.418C>G
  hgvsp: ENSP00000414616.1:p.Leu140Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.275C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1408C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1408C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.612C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.664C>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu168Val
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

1-32542834-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542834
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542834
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.421A>G
  hgvsp: ENSP00000414616.1:p.Thr141Ala
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.615A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.278A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.667A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.505A>G
  hgvsp: ENSP00000338165.5:p.Thr169Ala
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.724A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.530A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.160A>G
  hgvsp: ENSP00000391719.1:p.Thr54Ala
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.923A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1411A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1411A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+387A>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr169Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

1-32542835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542835
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542835
    reference: chr 1
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.506C>T
  hgvsp: ENSP00000338165.5:p.Thr169Met
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.725C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.422C>T
  hgvsp: ENSP00000414616.1:p.Thr141Met
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.161C>T
  hgvsp: ENSP00000391719.1:p.Thr54Met
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.531C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.279C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.668C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1412C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+388C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1412C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.616C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.924C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr169Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

1-32542836-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542836
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542836
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.423G>A
  hgvsp: ENST00000438825.1:c.423G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.726G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.280G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+389G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.532G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.162G>A
  hgvsp: ENST00000427288.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1413G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.507G>A
  hgvsp: ENST00000336294.5:c.507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.617G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.925G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1413G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.669G>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr169Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-32542844-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542844
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542844
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.540G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+397G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1421G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.734G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.431G>T
  hgvsp: ENSP00000414616.1:p.Gly144Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.933G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.625G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.515G>T
  hgvsp: ENSP00000338165.5:p.Gly172Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.677G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.288G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.170G>T
  hgvsp: ENSP00000391719.1:p.Gly57Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1421G>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly172Val
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-32542849-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542849
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542849
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1426A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.630A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.938A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.436A>G
  hgvsp: ENSP00000414616.1:p.Ser146Gly
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+402A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1426A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.682A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.520A>G
  hgvsp: ENSP00000338165.5:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.175A>G
  hgvsp: ENSP00000391719.1:p.Ser59Gly
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.293A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.739A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.545A>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser174Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

1-32542850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542850
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542850
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.521G>A
  hgvsp: ENSP00000338165.5:p.Ser174Asn
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.294G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.683G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.939G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.437G>A
  hgvsp: ENSP00000414616.1:p.Ser146Asn
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1427G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+403G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.740G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.176G>A
  hgvsp: ENSP00000391719.1:p.Ser59Asn
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1427G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.546G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.631G>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser174Asn
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-32542851-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542851
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542851
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.547T>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.940T>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.438T>A
  hgvsp: ENSP00000414616.1:p.Ser146Arg
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.632T>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.295T>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.177T>A
  hgvsp: ENSP00000391719.1:p.Ser59Arg
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1428T>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+404T>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.522T>A
  hgvsp: ENSP00000338165.5:p.Ser174Arg
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.741T>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.684T>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1428T>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser174Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

1-32542859-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542859
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542859
    reference: chr 1
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.446G>A
  hgvsp: ENSP00000414616.1:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.530G>A
  hgvsp: ENSP00000338165.5:p.Arg177Gln
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.640G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.692G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.948G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1436G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.185G>A
  hgvsp: ENSP00000391719.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.555G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+412G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1436G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.749G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.303G>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg177Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

1-32542871-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542871
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542871
    reference: chr 1
allele count: 11
allele frequency: 9.06065698000066e-5
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.960A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.458A>G
  hgvsp: ENSP00000414616.1:p.His153Arg
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.567A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.704A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+424A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1448A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.761A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1448A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.542A>G
  hgvsp: ENSP00000338165.5:p.His181Arg
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.652A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.315A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.197A>G
  hgvsp: ENSP00000391719.1:p.His66Arg
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His181Arg
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

1-32542873-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542873
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542873
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.654C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1450C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+426C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.962C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.544C>T
  hgvsp: ENSP00000338165.5:p.Leu182Phe
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.317C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.763C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.569C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.199C>T
  hgvsp: ENSP00000391719.1:p.Leu67Phe
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.460C>T
  hgvsp: ENSP00000414616.1:p.Leu154Phe
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.706C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1450C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu182Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

1-32542877-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542877
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542877
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.573T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.658T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.464T>G
  hgvsp: ENSP00000414616.1:p.Phe155Cys
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.321T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.710T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.203T>G
  hgvsp: ENSP00000391719.1:p.Phe68Cys
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.548T>G
  hgvsp: ENSP00000338165.5:p.Phe183Cys
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.767T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+430T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1454T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.966T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1454T>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe183Cys
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-32542884-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542884
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542884
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.328C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1461C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+437C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.580C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1461C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.665C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.210C>G
  hgvsp: ENST00000427288.1:c.210C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.471C>G
  hgvsp: ENST00000438825.1:c.471C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.774C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.717C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.555C>G
  hgvsp: ENST00000336294.5:c.555C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.973C>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr185Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

1-32542890-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542890
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542890
    reference: chr 1
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.780C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.979C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.586C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.216C>T
  hgvsp: ENST00000427288.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+443C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.561C>T
  hgvsp: ENST00000336294.5:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1467C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.477C>T
  hgvsp: ENST00000438825.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1467C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.334C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.671C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.723C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser187Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-32542908-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542908
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542908
    reference: chr 1
allele count: 3
allele frequency: 2.47255464345762e-5
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.352C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.495C>T
  hgvsp: ENST00000438825.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.798C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.604C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.579C>T
  hgvsp: ENST00000336294.5:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.741C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.689C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.234C>T
  hgvsp: ENST00000427288.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1485C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.997C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+461C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1485C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Phe193Phe
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

1-32542914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542914
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542914
    reference: chr 1
allele count: 2
allele frequency: 1.648886177387175e-5
allele num: 121294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.804C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.747C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1491C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.240C>T
  hgvsp: ENST00000427288.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.610C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+467C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1491C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.695C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1003C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.501C>T
  hgvsp: ENST00000438825.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.358C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.585C>T
  hgvsp: ENST00000336294.5:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys195Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-32542920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542920
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542920
    reference: chr 1
allele count: 2
allele frequency: 1.649538953862396e-5
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.809+1G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.363+1G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.615+1G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.590+1G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.700+1G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1008+1G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1497G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+473G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.506+1G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.752+1G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.245+1G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1497G>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.590+1G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-32542925-TACCCCTCACTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542925
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542913
    reference: chr 1
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 7802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.590+17_590+28delTCACCCCTCACT
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: TACCCCTCACTTC
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-32542926-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542926
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542927
    reference: chr 1
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1507dupC
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1008+11dupC
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.700+11dupC
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+483dupC
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.590+11dupC
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1507dupC
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.752+11dupC
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.615+11dupC
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.506+11dupC
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.809+11dupC
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.363+11dupC
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.245+11dupC
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.590+11dupC
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-32542932-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542932
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542932
    reference: chr 1
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.363+13C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.809+13C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.752+13C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1509C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.700+13C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.590+13C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1509C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.245+13C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1008+13C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.506+13C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.615+13C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+485C>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

1-32542940-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542940
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542940
    reference: chr 1
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.615+21C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.752+21C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.506+21C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.700+21C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1517C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.590+21C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.363+21C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1517C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.809+21C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+493C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1008+21C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.245+21C>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

1-32542941-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542941
    reference: chr 1
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.363+22C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+494C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.506+22C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.809+22C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.615+22C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1518C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.700+22C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1518C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1008+22C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.752+22C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.590+22C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.245+22C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

1-32542943-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542943
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542943
    reference: chr 1
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.506+24T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.245+24T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1520T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.700+24T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.363+24T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.590+24T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.752+24T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.615+24T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1008+24T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+496T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.809+24T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1520T>C
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

1-32542957-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542957
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542957
    reference: chr 1
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1534C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.590+38C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+510C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.700+38C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.363+38C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.615+38C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.506+38C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.245+38C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1008+38C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1534C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.809+38C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.752+38C>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

1-32542963-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542963
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542963
    reference: chr 1
allele count: 1
allele frequency: 8.29462508294625e-6
allele num: 120560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.245+44C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+516C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.615+44C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.590+44C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.700+44C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1008+44C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.752+44C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.363+44C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1540C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1540C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.506+44C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.809+44C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

1-32542969-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542969
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542969
    reference: chr 1
allele count: 1
allele frequency: 8.316008316008316e-6
allele num: 120250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.506+50C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.752+50C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.809+50C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.590+50C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.363+50C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1546C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.615+50C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+522C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.700+50C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1546C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.245+50C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1008+50C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

1-32542971-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542971
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542971
    reference: chr 1
allele count: 1
allele frequency: 8.325840077263796e-6
allele num: 120108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.700+52C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.363+52C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1548C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.615+52C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+524C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.506+52C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.809+52C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1548C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.245+52C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.590+52C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1008+52C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.752+52C>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

1-32542971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32542971
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32542971
    reference: chr 1
allele count: 1
allele frequency: 8.325840077263796e-6
allele num: 120108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.752+52C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1008+52C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.363+52C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-11+1548C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.245+52C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.590+52C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.615+52C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.506+52C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.435+524C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.700+52C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.351+1548C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.809+52C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

1-32552563-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32552563
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32552563
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 4
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.507-4713A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.701-4713A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000266203
  ensembl transcript: ENST00000577515
  gene symbol: MIR5585
  hgvsc: ENST00000577515.1:n.14A>G
  variant of: http://identifiers.org/hgnc/43452
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.246-4713A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.591-4713A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.810-4713A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-10-4710A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.352-4713A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.364-4713A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1009-4713A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.436-4713A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.616-4713A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.753-4713A>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: mature miRNA
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

1-32552567-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32552567
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32552567
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 6
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.364-4709G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.810-4709G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000266203
  ensembl transcript: ENST00000577515
  gene symbol: MIR5585
  hgvsc: ENST00000577515.1:n.18G>T
  variant of: http://identifiers.org/hgnc/43452
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.701-4709G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.591-4709G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.436-4709G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.246-4709G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.753-4709G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.507-4709G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.616-4709G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.352-4709G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-10-4706G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1009-4709G>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: mature miRNA
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

1-32557237-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557237
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557237
    reference: chr 1
allele count: 1
allele frequency: 9.16791961568081e-6
allele num: 109076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.246-39C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.436-39C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.810-39C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.352-39C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.591-39C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.753-39C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.364-39C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.616-39C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.701-39C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.507-39C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-10-36C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1009-39C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17101
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-32557241-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557241
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557241
    reference: chr 1
allele count: 12
allele frequency: 1.098478607129126e-4
allele num: 109242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.701-35G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.507-35G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.810-35G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1009-35G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.436-35G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.616-35G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.753-35G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-10-32G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.352-35G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.364-35G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.246-35G>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.591-35G>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17574
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21348
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

1-32557244-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557244
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557244
    reference: chr 1
allele count: 747
allele frequency: 6.829651843183148e-3
allele num: 109376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.507-32A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.436-32A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.591-32A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.364-32A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.616-32A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1009-32A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.246-32A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-10-29A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.352-32A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.701-32A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.753-32A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.810-32A>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 18014
  bin: 2.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 1.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 3.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 21798
  bin: 2.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 2
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-32557247-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557247
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557247
    reference: chr 1
allele count: 27
allele frequency: 2.465753424657534e-4
allele num: 109500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-10-26C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.436-29C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.591-29C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.352-29C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.616-29C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.364-29C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.810-29C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.507-29C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.701-29C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.753-29C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1009-29C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.246-29C>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18537
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22220
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

1-32557249-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557249
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557249
    reference: chr 1
allele count: 2
allele frequency: 1.82425160078078e-5
allele num: 109634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-10-24T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.701-27T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.753-27T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.591-27T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.436-27T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.616-27T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.364-27T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1009-27T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.810-27T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.352-27T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.246-27T>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.507-27T>C
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

1-32557252-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557252
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557252
    reference: chr 1
allele count: 3
allele frequency: 2.734780944046382e-5
allele num: 109698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.753-24C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.810-24C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.507-24C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1009-24C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.436-24C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.616-24C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.352-24C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.591-24C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.246-24C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.701-24C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-10-21C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.364-24C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19040
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-32557257-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557257
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557257
    reference: chr 1
allele count: 42
allele frequency: 3.819640226268211e-4
allele num: 109958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.436-19C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.364-19C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.507-19C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.701-19C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.591-19C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.616-19C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.246-19C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-10-16C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.352-19C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.753-19C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1009-19C>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.810-19C>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 19510
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6453
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22912
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-32557261-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557261
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557261
    reference: chr 1
allele count: 2
allele frequency: 1.814421018253075e-5
allele num: 110228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.753-15C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1009-15C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.507-15C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.701-15C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.436-15C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.810-15C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.616-15C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.364-15C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.591-15C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.352-15C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.246-15C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-10-12C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22900
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

1-32557262-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557262
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557262
    reference: chr 1
allele count: 2
allele frequency: 1.812645011600928e-5
allele num: 110336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.616-14G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.507-14G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.364-14G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.352-14G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.436-14G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.591-14G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.-10-11G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.753-14G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.701-14G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.246-14G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1009-14G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.810-14G>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22873
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/1-32557289-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557289
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557289
    reference: chr 1
allele count: 1
allele frequency: 8.84016973125884e-6
allele num: 113120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.377A>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1022A>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.7A>C
  hgvsp: ENSP00000362737.4:p.Ile3Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.259A>C
  hgvsp: ENSP00000391719.1:p.Ile87Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.365A>C
  hgvsp: ENSP00000390889.1:p.His122Pro
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.604A>C
  hgvsp: ENSP00000338165.5:p.Ile202Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.714A>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.520A>C
  hgvsp: ENSP00000414616.1:p.Ile174Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.629A>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.449A>C
  hgvsp: ENSP00000390057.2:p.His150Pro
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.823A>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.766A>C
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile202Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

1-32557289-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557289
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557289
    reference: chr 1
allele count: 1
allele frequency: 8.84016973125884e-6
allele num: 113120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.449A>G
  hgvsp: ENSP00000390057.2:p.His150Arg
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.766A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.520A>G
  hgvsp: ENSP00000414616.1:p.Ile174Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.7A>G
  hgvsp: ENSP00000362737.4:p.Ile3Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.365A>G
  hgvsp: ENSP00000390889.1:p.His122Arg
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.604A>G
  hgvsp: ENSP00000338165.5:p.Ile202Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.259A>G
  hgvsp: ENSP00000391719.1:p.Ile87Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1022A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.377A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.823A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.714A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.629A>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile202Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

1-32557293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557293
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557293
    reference: chr 1
allele count: 3
allele frequency: 2.637362637362637e-5
allele num: 113750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.263C>T
  hgvsp: ENSP00000391719.1:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.369C>T
  hgvsp: ENST00000441402.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.718C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.381C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.524C>T
  hgvsp: ENSP00000414616.1:p.Pro175Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.11C>T
  hgvsp: ENSP00000362737.4:p.Pro4Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.633C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.453C>T
  hgvsp: ENST00000456834.2:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.608C>T
  hgvsp: ENSP00000338165.5:p.Pro203Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.770C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1026C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.827C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro203Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-32557294-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557294
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557294
    reference: chr 1
allele count: 2
allele frequency: 1.753217153476629e-5
allele num: 114076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.370G>A
  hgvsp: ENSP00000390889.1:p.Val124Ile
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.525G>A
  hgvsp: ENST00000438825.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1027G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.454G>A
  hgvsp: ENSP00000390057.2:p.Val152Ile
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.634G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.828G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.719G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.382G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.264G>A
  hgvsp: ENST00000427288.1:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.12G>A
  hgvsp: ENST00000373634.4:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.771G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.609G>A
  hgvsp: ENST00000336294.5:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val152Ile
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

1-32557310-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557310
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557310
    reference: chr 1
allele count: 1
allele frequency: 8.51368148614824e-6
allele num: 117458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.398T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.470T>G
  hgvsp: ENSP00000390057.2:p.Leu157Trp
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.625T>G
  hgvsp: ENSP00000338165.5:p.Cys209Gly
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.541T>G
  hgvsp: ENSP00000414616.1:p.Cys181Gly
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.735T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.386T>G
  hgvsp: ENSP00000390889.1:p.Leu129Trp
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.28T>G
  hgvsp: ENSP00000362737.4:p.Cys10Gly
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.844T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.280T>G
  hgvsp: ENSP00000391719.1:p.Cys94Gly
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.650T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1043T>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.787T>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21779
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys209Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

1-32557310-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557310
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557311
    reference: chr 1
allele count: 1
allele frequency: 8.51368148614824e-6
allele num: 117458
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.788dupG
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1044dupG
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.281dupG
  hgvsp: ENSP00000391719.1:p.Cys94TrpfsTer66
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.29dupG
  hgvsp: ENSP00000362737.4:p.Cys10TrpfsTer66
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.542dupG
  hgvsp: ENSP00000414616.1:p.Cys181TrpfsTer?
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.626dupG
  hgvsp: ENSP00000338165.5:p.Cys209TrpfsTer66
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.651dupG
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.387dupG
  hgvsp: ENSP00000390889.1:p.Arg130AlafsTer32
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.471dupG
  hgvsp: ENSP00000390057.2:p.Arg158AlafsTer32
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.736dupG
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.845dupG
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.399dupG
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys209TrpfsTer66
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

1-32557312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557312
    reference: chr 1
allele count: 1
allele frequency: 8.497909514259493e-6
allele num: 117676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.543C>T
  hgvsp: ENST00000438825.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1045C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.400C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.652C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.789C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.627C>T
  hgvsp: ENST00000336294.5:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.30C>T
  hgvsp: ENST00000373634.4:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.846C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.388C>T
  hgvsp: ENSP00000390889.1:p.Arg130Ter
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.472C>T
  hgvsp: ENSP00000390057.2:p.Arg158Ter
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.282C>T
  hgvsp: ENST00000427288.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.737C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg158Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-32557314-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557314
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557314
    reference: chr 1
allele count: 11
allele frequency: 9.352150994728788e-5
allele num: 117620
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.629A>C
  hgvsp: ENSP00000338165.5:p.Asp210Ala
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.284A>C
  hgvsp: ENSP00000391719.1:p.Asp95Ala
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.545A>C
  hgvsp: ENSP00000414616.1:p.Asp182Ala
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.32A>C
  hgvsp: ENSP00000362737.4:p.Asp11Ala
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1047A>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.848A>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.739A>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.402A>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.791A>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.474A>C
  hgvsp: ENST00000456834.2:c.474A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.654A>C
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.390A>C
  hgvsp: ENST00000441402.1:c.390A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7297
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21928
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24923
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp210Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-32557314-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557314
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557314
    reference: chr 1
allele count: 1
allele frequency: 8.501955449753444e-6
allele num: 117620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.848A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.402A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.791A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.390A>G
  hgvsp: ENST00000441402.1:c.390A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.284A>G
  hgvsp: ENSP00000391719.1:p.Asp95Gly
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.32A>G
  hgvsp: ENSP00000362737.4:p.Asp11Gly
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.545A>G
  hgvsp: ENSP00000414616.1:p.Asp182Gly
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.629A>G
  hgvsp: ENSP00000338165.5:p.Asp210Gly
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.654A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.739A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1047A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.474A>G
  hgvsp: ENST00000456834.2:c.474A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp210Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

1-32557320-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557320
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557320
    reference: chr 1
allele count: 2
allele frequency: 1.675406704977633e-5
allele num: 119374
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.635G>A
  hgvsp: ENSP00000338165.5:p.Arg212His
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.290G>A
  hgvsp: ENSP00000391719.1:p.Arg97His
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.660G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.745G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.396G>A
  hgvsp: ENST00000441402.1:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.480G>A
  hgvsp: ENST00000456834.2:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.854G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.38G>A
  hgvsp: ENSP00000362737.4:p.Arg13His
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.797G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.551G>A
  hgvsp: ENSP00000414616.1:p.Arg184His
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1053G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.408G>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22739
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg212His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum

1-32557321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557321
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557321
    reference: chr 1
allele count: 1
allele frequency: 8.368060785593547e-6
allele num: 119502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.397C>T
  hgvsp: ENSP00000390889.1:p.Gln133Ter
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1054C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.636C>T
  hgvsp: ENST00000336294.5:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.798C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.39C>T
  hgvsp: ENST00000373634.4:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.746C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.552C>T
  hgvsp: ENST00000438825.1:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.409C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.481C>T
  hgvsp: ENSP00000390057.2:p.Gln161Ter
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.291C>T
  hgvsp: ENST00000427288.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.855C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.661C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln161Ter
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

1-32557329-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557329
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557329
    reference: chr 1
allele count: 2
allele frequency: 1.662593313049695e-5
allele num: 120294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.863G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.417G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.560G>A
  hgvsp: ENSP00000414616.1:p.Ser187Asn
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.754G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.806G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.489G>A
  hgvsp: ENST00000456834.2:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.644G>A
  hgvsp: ENSP00000338165.5:p.Ser215Asn
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.47G>A
  hgvsp: ENSP00000362737.4:p.Ser16Asn
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.669G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.405G>A
  hgvsp: ENST00000441402.1:c.405G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.299G>A
  hgvsp: ENSP00000391719.1:p.Ser100Asn
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1062G>A
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23287
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser215Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

1-32557340-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557340
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557340
    reference: chr 1
allele count: 5
allele frequency: 4.141404101646622e-5
allele num: 120732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.571C>G
  hgvsp: ENSP00000414616.1:p.His191Asp
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.428C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1073C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.765C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.416C>G
  hgvsp: ENSP00000390889.1:p.Pro139Arg
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.655C>G
  hgvsp: ENSP00000338165.5:p.His219Asp
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.817C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.58C>G
  hgvsp: ENSP00000362737.4:p.His20Asp
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.310C>G
  hgvsp: ENSP00000391719.1:p.His104Asp
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.680C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.874C>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.500C>G
  hgvsp: ENSP00000390057.2:p.Pro167Arg
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7546
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His219Asp
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP

1-32557342-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557342
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557342
    reference: chr 1
allele count: 1
allele frequency: 8.278693953241936e-6
allele num: 120792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.573C>T
  hgvsp: ENST00000438825.1:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.60C>T
  hgvsp: ENST00000373634.4:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1075C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.502C>T
  hgvsp: ENSP00000390057.2:p.His168Tyr
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.819C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.876C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.418C>T
  hgvsp: ENSP00000390889.1:p.His140Tyr
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.312C>T
  hgvsp: ENST00000427288.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.682C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.430C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000466321
  gene symbol: TMEM39B
  hgvsc: ENST00000466321.1:n.767C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.657C>T
  hgvsp: ENST00000336294.5:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23551
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His168Tyr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

1-32557346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557346
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557346
    reference: chr 1
allele count: 55
allele frequency: 4.551247041689423e-4
allele num: 120846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1079G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.64G>A
  hgvsp: ENSP00000362737.4:p.Ala22Thr
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.686G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000414616
  ensembl transcript: ENST00000438825
  gene symbol: TMEM39B
  hgvsc: ENST00000438825.1:c.577G>A
  hgvsp: ENST00000438825.1:c.577G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.661G>A
  hgvsp: ENSP00000338165.5:p.Ala221Thr
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.823G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.434G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.880G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.422G>A
  hgvsp: ENSP00000390889.1:p.Gly141Asp
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.506G>A
  hgvsp: ENSP00000390057.2:p.Gly169Asp
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.316G>A
  hgvsp: ENSP00000391719.1:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23618
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7572
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25081
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Ala221Thr
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

1-32557351-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557351
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557351
    reference: chr 1
allele count: 1
allele frequency: 8.269246671628215e-6
allele num: 120930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.691C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.666C>T
  hgvsp: ENST00000336294.5:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.439C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.828C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.69C>T
  hgvsp: ENST00000373634.4:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.427C>T
  hgvsp: ENSP00000390889.1:p.His143Tyr
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.511C>T
  hgvsp: ENSP00000390057.2:p.His171Tyr
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1084C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.885C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.321C>T
  hgvsp: ENST00000427288.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25024
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8774
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His171Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-32557352-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557352
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557352
    reference: chr 1
allele count: 39
allele frequency: 3.224153039797623e-4
allele num: 120962
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.512A>G
  hgvsp: ENSP00000390057.2:p.His171Arg
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.322A>G
  hgvsp: ENSP00000391719.1:p.Met108Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.886A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1085A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.70A>G
  hgvsp: ENSP00000362737.4:p.Met24Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.428A>G
  hgvsp: ENSP00000390889.1:p.His143Arg
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.667A>G
  hgvsp: ENSP00000338165.5:p.Met223Val
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.440A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.829A>G
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.692A>G
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23715
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25030
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 40711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met223Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

1-32557352-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557352
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557352
    reference: chr 1
allele count: 1
allele frequency: 8.267059076404159e-6
allele num: 120962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.829A>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.886A>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.667A>T
  hgvsp: ENSP00000338165.5:p.Met223Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.322A>T
  hgvsp: ENSP00000391719.1:p.Met108Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.70A>T
  hgvsp: ENSP00000362737.4:p.Met24Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.440A>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.692A>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.512A>T
  hgvsp: ENSP00000390057.2:p.His171Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.428A>T
  hgvsp: ENSP00000390889.1:p.His143Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1085A>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met223Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

1-32557357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557357
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557357
    reference: chr 1
allele count: 1
allele frequency: 8.267059076404159e-6
allele num: 120962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.891G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.697G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.834G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.445G>A
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.433G>A
  hgvsp: ENSP00000390889.1:p.Ala145Thr
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.75G>A
  hgvsp: ENST00000373634.4:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.327G>A
  hgvsp: ENST00000427288.1:c.327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.517G>A
  hgvsp: ENSP00000390057.2:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.672G>A
  hgvsp: ENST00000336294.5:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1090G>A
  variant of: http://identifiers.org/hgnc/25510
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala173Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

1-32557361-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32557361
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32557361
    reference: chr 1
allele count: 4
allele frequency: 3.305621208865676e-5
allele num: 121006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000498613
  gene symbol: TMEM39B
  hgvsc: ENST00000498613.1:n.449C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000487305
  gene symbol: TMEM39B
  hgvsc: ENST00000487305.1:n.1094C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000476968
  gene symbol: TMEM39B
  hgvsc: ENST00000476968.1:n.895C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390057
  ensembl transcript: ENST00000456834
  gene symbol: TMEM39B
  hgvsc: ENST00000456834.2:c.521C>T
  hgvsp: ENSP00000390057.2:p.Pro174Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000362737
  ensembl transcript: ENST00000373634
  gene symbol: TMEM39B
  hgvsc: ENST00000373634.4:c.79C>T
  hgvsp: ENSP00000362737.4:p.Arg27Trp
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000390889
  ensembl transcript: ENST00000441402
  gene symbol: TMEM39B
  hgvsc: ENST00000441402.1:c.437C>T
  hgvsp: ENSP00000390889.1:p.Pro146Leu
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000391719
  ensembl transcript: ENST00000427288
  gene symbol: TMEM39B
  hgvsc: ENST00000427288.1:c.331C>T
  hgvsp: ENSP00000391719.1:p.Arg111Trp
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121775
  ensembl protein: ENSP00000338165
  ensembl transcript: ENST00000336294
  gene symbol: TMEM39B
  hgvsc: ENST00000336294.5:c.676C>T
  hgvsp: ENSP00000338165.5:p.Arg226Trp
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000468135
  gene symbol: TMEM39B
  hgvsc: ENST00000468135.1:n.838C>T
  variant of: http://identifiers.org/hgnc/25510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121775
  ensembl transcript: ENST00000472503
  gene symbol: TMEM39B
  hgvsc: ENST00000472503.1:n.701C>T
  variant of: http://identifiers.org/hgnc/25510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24858
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg226Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C

GenotypeDepth
all individuals: 2834
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4278
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4548
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28258
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4132
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.267441860465116e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.381e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

DP
type: SiteQuality
SIO_000300: 2.650432e6

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeDepth
all individuals: 3988
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4279
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4555
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10365
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28248
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.649e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 2.649914e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 1.035e1

GenotypeDepth
all individuals: 387
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8329
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28249
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4279
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.649854e6

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 1.178e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e0

QD
type: SiteQuality
SIO_000300: 1.123e1

GenotypeDepth
all individuals: 7814
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6527
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28250
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10366
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.648186994306263e-4
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.058361052313275e-3
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

DP
type: SiteQuality
SIO_000300: 2.651509e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeDepth
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8342
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28242
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.234e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.649e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

FS
type: SiteQuality
SIO_000300: 1.133e0

DP
type: SiteQuality
SIO_000300: 2.649304e6

MQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.91e-1

GenotypeDepth
all individuals: 386
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 777
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28242
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10373
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.44e-1

DP
type: SiteQuality
SIO_000300: 2.649369e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.512e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 2.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

QD
type: SiteQuality
SIO_000300: 1.603e1

GenotypeDepth
all individuals: 7817
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6531
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2505
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28243
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4135
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 1.723e0

DP
type: SiteQuality
SIO_000300: 2.649339e6

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

QD
type: SiteQuality
SIO_000300: 1.52e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

GenotypeDepth
all individuals: 3986
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7325
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28242
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4277
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.89e-1

FS
type: SiteQuality
SIO_000300: 1.134e0

DP
type: SiteQuality
SIO_000300: 2.649497e6

QD
type: SiteQuality
SIO_000300: 1.547e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeDepth
all individuals: 387
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 776
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28241
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10369
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4554
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4137
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.784e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 2.649224e6

QD
type: SiteQuality
SIO_000300: 1.199e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.399999999999999e-1

GenotypeDepth
all individuals: 1062
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28240
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4137
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.54e-1

DP
type: SiteQuality
SIO_000300: 2.649199e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

FS
type: SiteQuality
SIO_000300: 3.991e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.092e1

GenotypeDepth
all individuals: 675
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 777
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28239
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4136
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.289e1

FS
type: SiteQuality
SIO_000300: 1.823e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-3

DP
type: SiteQuality
SIO_000300: 2.649271e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 2835
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5630
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2505
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28238
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.207e1

FS
type: SiteQuality
SIO_000300: 3.554e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 2.649097e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.881e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeDepth
all individuals: 776
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28239
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4554
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2505
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.123e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.162e0

MQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 2.64905e6

VQSLOD
type: SiteQuality
SIO_000300: -6.859999999999999e-2

FS
type: SiteQuality
SIO_000300: 4.926e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.811e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

GenotypeDepth
all individuals: 775
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 676
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10375
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28240
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.64904e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e0

QD
type: SiteQuality
SIO_000300: 1.136e1

FS
type: SiteQuality
SIO_000300: 8.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e0

VQSLOD
type: SiteQuality
SIO_000300: -6.755e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 1062
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3986
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28240
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4554
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.649072e6

QD
type: SiteQuality
SIO_000300: 1.156e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.265e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.433e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.942e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e0

GenotypeDepth
all individuals: 2835
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7325
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4554
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28239
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

FS
type: SiteQuality
SIO_000300: 1.329e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.366e0

VQSLOD
type: SiteQuality
SIO_000300: -1.049e0

QD
type: SiteQuality
SIO_000300: 9.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

DP
type: SiteQuality
SIO_000300: 2.649021e6

GenotypeDepth
all individuals: 386
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28239
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4554
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.093e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.285e1

DP
type: SiteQuality
SIO_000300: 2.649028e6

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

VQSLOD
type: SiteQuality
SIO_000300: 9.99e-1

GenotypeDepth
all individuals: 387
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 675
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28245
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4550
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.662628709872804e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

DP
type: SiteQuality
SIO_000300: 2.649236e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.204e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeDepth
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3987
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10369
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28234
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.65e-1

DP
type: SiteQuality
SIO_000300: 2.648765e6

MQRankSum
type: SiteQuality
SIO_000300: -1.305e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.89e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

FS
type: SiteQuality
SIO_000300: 1.1094e1

VQSLOD
type: SiteQuality
SIO_000300: -1.666e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

QD
type: SiteQuality
SIO_000300: 1.28e1

GenotypeDepth
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28233
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2507
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10367
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4275
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

FS
type: SiteQuality
SIO_000300: 8.355e0

MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.416e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.92e-1

DP
type: SiteQuality
SIO_000300: 2.648727e6

QD
type: SiteQuality
SIO_000300: 1.586e1

GenotypeDepth
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2505
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4550
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10350
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28233
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

QD
type: SiteQuality
SIO_000300: 1.124e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.328e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 2.64849e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

GenotypeDepth
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1062
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4171
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28231
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4131
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.208e0

FS
type: SiteQuality
SIO_000300: 2.0947e1

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

DP
type: SiteQuality
SIO_000300: 2.648261e6

QD
type: SiteQuality
SIO_000300: 1.131e1

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.924e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 8344
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1794
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28229
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4517
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4158
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99868058054456e-5
allele num: 66696
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.846e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.038e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.89e-1

DP
type: SiteQuality
SIO_000300: 2.646768e6

QD
type: SiteQuality
SIO_000300: 1.362e1

MQ
type: SiteQuality
SIO_000300: 5.903e1

GenotypeDepth
all individuals: 2832
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4514
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28223
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999490086685263e-5
allele num: 66678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.023e0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 2.645817e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.515e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.398e1

GenotypeDepth
all individuals: 8336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28214
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4148
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.81e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

VQSLOD
type: SiteQuality
SIO_000300: -8.01e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.223e0

DP
type: SiteQuality
SIO_000300: 2.644164e6

FS
type: SiteQuality
SIO_000300: 2.633e0

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-1

QD
type: SiteQuality
SIO_000300: 1.055e1

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9676
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28212
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4476
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4148
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4130
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: -5.045e0

QD
type: SiteQuality
SIO_000300: 3.42e0

VQSLOD
type: SiteQuality
SIO_000300: -4.606e-1

DP
type: SiteQuality
SIO_000300: 2.641186e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 8.994e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.27e-1

MQ
type: SiteQuality
SIO_000300: 5.301e1

GenotypeDepth
all individuals: 7802
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3984
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 771
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28210
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 4.662e0

QD
type: SiteQuality
SIO_000300: 1.133e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.655e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.641221e6

GenotypeDepth
all individuals: 385
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28204
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

DP
type: SiteQuality
SIO_000300: 2.637583e6

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 2.758e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 2832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4334
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4110
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2440
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28196
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2439
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.04e-1

DP
type: SiteQuality
SIO_000300: 2.631917e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 2.119e0

MQRankSum
type: SiteQuality
SIO_000300: -1.985e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.661999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.6e-1

QD
type: SiteQuality
SIO_000300: 1.447e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.87e-1

GenotypeDepth
all individuals: 3985
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4342
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8771
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28194
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2440
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.631697e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.519999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.722e0

QD
type: SiteQuality
SIO_000300: 1.216e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.687e0

FS
type: SiteQuality
SIO_000300: 1.345e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeDepth
all individuals: 883
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4345
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4239
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.13195977434388e-5
allele num: 16308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.085e0

DP
type: SiteQuality
SIO_000300: 2.629688e6

VQSLOD
type: SiteQuality
SIO_000300: -5.116000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

QD
type: SiteQuality
SIO_000300: 1.472e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.41e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

GenotypeDepth
all individuals: 5623
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4062
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28170
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 832
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7144
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4039
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503985561738607e-5
allele num: 66490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

FS
type: SiteQuality
SIO_000300: 2.412e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.392e0

VQSLOD
type: SiteQuality
SIO_000300: -1.056e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 2.611399e6

QD
type: SiteQuality
SIO_000300: 2.18e1

GenotypeDepth
all individuals: 2830
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3943
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4185
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28149
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2398
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505661286437003e-5
allele num: 66416
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.863e1

DP
type: SiteQuality
SIO_000300: 2.602401e6

VQSLOD
type: SiteQuality
SIO_000300: -2.027e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.486e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 1.535e1

GenotypeDepth
all individuals: 770
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4067
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4941
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28118
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3938
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15840
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.444e1

VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 5.158e0

DP
type: SiteQuality
SIO_000300: 2.595081e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.119e0

GenotypeDepth
all individuals: 2829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3939
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2171
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4070
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28117
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508750754375377e-5
allele num: 66280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 2.594366e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.862e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

FS
type: SiteQuality
SIO_000300: 1.611e0

MQRankSum
type: SiteQuality
SIO_000300: -7.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.162e1

GenotypeDepth
all individuals: 5113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4070
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2171
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28117
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3939
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.347594261774788e-5
allele num: 15754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.862e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

FS
type: SiteQuality
SIO_000300: 1.611e0

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.594366e6

MQRankSum
type: SiteQuality
SIO_000300: -7.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

GenotypeDepth
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.696e3

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.053e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-2

QD
type: SiteQuality
SIO_000300: 1.948e1

GenotypeDepth
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.659e3

QD
type: SiteQuality
SIO_000300: 1.079e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.019e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.081e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeDepth
all individuals: 5847
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2251
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28844
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6862
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 589
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583180292571718e-5
allele num: 63164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.168e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.001e0

DP
type: SiteQuality
SIO_000300: 1.37219e6

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 3.702e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeDepth
all individuals: 68
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6984
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30862
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2731
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1490
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.422137947380896e-3
allele num: 8438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.907e0

QD
type: SiteQuality
SIO_000300: 1.267e1

MQRankSum
type: SiteQuality
SIO_000300: -2.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

DP
type: SiteQuality
SIO_000300: 1.387495e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2437
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 283
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31888
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1254
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 628
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2125
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 582
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7042
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 784
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 465
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2167
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1391
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 368
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 246
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2688
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2702
bin: 9.75e1
variant carriers: 737

European (Finnish)
type: Population
allele count: 55
allele frequency: 8.516568597088882e-3
allele num: 6458
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.449388209121246e-4
allele num: 8990
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.693564455070731e-3
allele num: 10038
num of homozygotes: 0

Latino
type: Population
allele count: 37
allele frequency: 3.26278659611993e-3
allele num: 11340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 629
allele frequency: 9.935553168635876e-3
allele num: 63308
num of homozygotes: 2

Other
type: Population
allele count: 5
allele frequency: 6.377551020408163e-3
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.804e0

QD
type: SiteQuality
SIO_000300: 1.191e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e-1

FS
type: SiteQuality
SIO_000300: 7.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.405693e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32431
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 578
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7229
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63372
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.952229299363058e-5
allele num: 10048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 26
allele frequency: 3.072559678562987e-3
allele num: 8462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.179e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

QD
type: SiteQuality
SIO_000300: 1.138e1

FS
type: SiteQuality
SIO_000300: 2.608e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

DP
type: SiteQuality
SIO_000300: 1.410309e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeDepth
all individuals: 689
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 745
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 483
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2627
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.361275088547816e-4
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

DP
type: SiteQuality
SIO_000300: 1.417626e6

FS
type: SiteQuality
SIO_000300: 1.514e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

QD
type: SiteQuality
SIO_000300: 1.479e1

GenotypeDepth
all individuals: 1615
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2761
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34021
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.100594320933304e-4
allele num: 9086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.152088258471237e-5
allele num: 63450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.473e1

DP
type: SiteQuality
SIO_000300: 1.426111e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.079e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 676
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34110
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2216
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 7557
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 805
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 335
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 424
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 429
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2917
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2039
bin: 9.75e1
variant carriers: 46

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.146435089044113e-5
allele num: 63564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

South Asian
type: Population
allele count: 40
allele frequency: 4.36109899694723e-3
allele num: 9172
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

QD
type: SiteQuality
SIO_000300: 1.255e1

DP
type: SiteQuality
SIO_000300: 1.43839e6

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7622
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570943823048888e-5
allele num: 63656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.074113856068743e-4
allele num: 9310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.579e-1

QD
type: SiteQuality
SIO_000300: 9.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.44808e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

GenotypeDepth
all individuals: 17
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7664
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.980982567353407e-4
allele num: 10096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 1.501e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.06e-1

QD
type: SiteQuality
SIO_000300: 1.246e1

DP
type: SiteQuality
SIO_000300: 1.45291e6

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 701
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1670
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3845
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8071
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36951
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 314
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549955051303512e-5
allele num: 64518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 8.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 1.719e0

DP
type: SiteQuality
SIO_000300: 1.497671e6

QD
type: SiteQuality
SIO_000300: 1.469e1

GenotypeDepth
all individuals: 29
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3845
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36951
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8071
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549955051303512e-5
allele num: 64518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.55e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

DP
type: SiteQuality
SIO_000300: 1.497671e6

FS
type: SiteQuality
SIO_000300: 1.719e0

QD
type: SiteQuality
SIO_000300: 1.469e1

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 37147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.612330198537095e-4
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.69e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.504466e6

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.11e0

GenotypeDepth
all individuals: 13
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8096
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 663
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3528
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.707767328456984e-5
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64740
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.800078400627205e-5
allele num: 10204
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e0

FS
type: SiteQuality
SIO_000300: 6.248e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 1.508655e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeDepth
all individuals: 17
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7072
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8319
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38781
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52592547379986e-5
allele num: 65534
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.017e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 1.662e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.537666e6

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

QD
type: SiteQuality
SIO_000300: 1.543e1

GenotypeDepth
all individuals: 29
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8319
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38781
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52592547379986e-5
allele num: 65534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.543e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 1.662e0

MQ
type: SiteQuality
SIO_000300: 6.017e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

DP
type: SiteQuality
SIO_000300: 1.537666e6

GenotypeDepth
all individuals: 16
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2459
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1931
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38580
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524808636516117e-5
allele num: 65582
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.543135e6

MQRankSum
type: SiteQuality
SIO_000300: 8.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.906e0

QD
type: SiteQuality
SIO_000300: 1.37e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.612e0

GenotypeDepth
all individuals: 819
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 29
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 38097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1687
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2013
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 338
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 390
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 556
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1373
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 525
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 3.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.493032514930325e-3
allele num: 6028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.047108294228777e-5
allele num: 65636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.598e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.454e2

DP
type: SiteQuality
SIO_000300: 1.555542e6

FS
type: SiteQuality
SIO_000300: 1.78524e2

QD
type: SiteQuality
SIO_000300: 9.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

GenotypeDepth
all individuals: 1907
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 793
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 341
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523554147114388e-5
allele num: 65636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.454e2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

FS
type: SiteQuality
SIO_000300: 1.78524e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.598e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.1e-1

DP
type: SiteQuality
SIO_000300: 1.555542e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

GenotypeDepth
all individuals: 16
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39490
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8478
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513546238837597e-5
allele num: 66070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.515506906437321e-5
allele num: 15348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

DP
type: SiteQuality
SIO_000300: 1.56526e6

VQSLOD
type: SiteQuality
SIO_000300: 3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

QD
type: SiteQuality
SIO_000300: 1.094e1

FS
type: SiteQuality
SIO_000300: 1.663e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: -1.478e0

GenotypeDepth
all individuals: 18
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22825
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8461
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.466632177961717e-5
allele num: 15464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66112
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-1

FS
type: SiteQuality
SIO_000300: 4.592e0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

QD
type: SiteQuality
SIO_000300: 1.29e1

DP
type: SiteQuality
SIO_000300: 1.568272e6

GenotypeDepth
all individuals: 72
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 743
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8729
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40646
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507658907248824e-5
allele num: 66328
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.578975e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.971e0

QD
type: SiteQuality
SIO_000300: 1.365e1

MQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.38e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.422e-1

FS
type: SiteQuality
SIO_000300: 1.4765e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeDepth
all individuals: 30
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25242
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23525
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.081094404732561e-4
allele num: 16228
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.984e0

VQSLOD
type: SiteQuality
SIO_000300: -3.179e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.343e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

FS
type: SiteQuality
SIO_000300: 2.1203e1

DP
type: SiteQuality
SIO_000300: 1.58515e6

GenotypeDepth
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1822
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.147792942333702e-5
allele num: 16266
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.585859e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.291e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

GenotypeDepth
all individuals: 73
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2134
bin: 9.75e1
variant carriers: 54

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

South Asian
type: Population
allele count: 55
allele frequency: 3.372991536857598e-3
allele num: 16306
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

FS
type: SiteQuality
SIO_000300: 5.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.578e0

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 1.587447e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

GenotypeQuality
all individuals: 634
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.85e-1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -6.09e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 5.93e-1

DP
type: SiteQuality
SIO_000300: 1.588006e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e-1

GenotypeQuality
all individuals: 2126
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 5.411743483358888e-4
allele num: 66522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.029385034837928e-4
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.65e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.589375e6

GenotypeQuality
all individuals: 2596
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

DP
type: SiteQuality
SIO_000300: 1.589375e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.26e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8748
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.589038e6

VQSLOD
type: SiteQuality
SIO_000300: -1.787e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.068e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

FS
type: SiteQuality
SIO_000300: 9.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.637e0

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

QD
type: SiteQuality
SIO_000300: 9.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8731
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40467
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2525
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216249087813184e-4
allele num: 16444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006524157421605e-5
allele num: 66522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0