3-195410657-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410657
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410657
    reference: chr 3
allele count: 4
allele frequency: 5.027525703225158e-5
allele num: 79562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.86T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1722T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.37T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1835T>C
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.10T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.189T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1853T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1854T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.136T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.343T>C
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7089
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19797
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8857
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-195410659-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410659
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410658
    reference: chr 3
allele count: 1
allele frequency: 1.248969600079934e-5
allele num: 80066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1857delA
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.346delA
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.192delA
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.40delA
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1838delA
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1856delA
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1725delA
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.89delA
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.13delA
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.139delA
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: CA
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

3-195410662-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410662
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410662
    reference: chr 3
allele count: 2
allele frequency: 2.463357556349304e-5
allele num: 81190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.42G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1859G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.141G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1727G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.91G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1840G>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.15G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1858G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.348G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.194G>T
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8859
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

3-195410664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410664
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410664
    reference: chr 3
allele count: 1
allele frequency: 1.221657544956998e-5
allele num: 81856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.350G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.196G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.17G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1860G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.93G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1729G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1842G>A
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.44G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1861G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.143G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17080
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-195410677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410677
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410677
    reference: chr 3
allele count: 2
allele frequency: 2.355657110550988e-5
allele num: 84902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.363C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.209C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1742C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1873C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1874C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.57C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1855C>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.30C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.106C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.156C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20225
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

3-195410687-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410687
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410687
    reference: chr 3
allele count: 4012
allele frequency: 5.402784885130222e-2
allele num: 74258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.373T>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1752T>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1865T>A
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.166T>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.116T>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.67T>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1883T>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1884T>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.40T>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.219T>A
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 3.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 1.25e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 13101
  bin: 7.5e0
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 2.75e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 14759
  bin: 2.25e1
  variant carriers: 554
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 9.75e1
  variant carriers: 1561
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 3.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 1.75e1
  variant carriers: 561
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 3.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 3.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 13590
  bin: 6.25e1
  variant carriers: 126
num of homozygotes: 15
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

3-195410689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410689
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410689
    reference: chr 3
allele count: 4025
allele frequency: 5.351112765561435e-2
allele num: 75218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.69C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1867C>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1754C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.375C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.168C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1886C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.221C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.42C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1885C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.118C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 1.25e1
  variant carriers: 292
genotype depth: GenotypeDepth
  all individuals: 13136
  bin: 7.5e0
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 9.75e1
  variant carriers: 1563
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 1.75e1
  variant carriers: 537
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 6258
  bin: 2.75e1
  variant carriers: 346
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 3.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 14450
  bin: 2.25e1
  variant carriers: 581
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 7.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 13676
  bin: 6.25e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.25e1
  variant carriers: 158
num of homozygotes: 15
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

3-195410692-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410692
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410692
    reference: chr 3
allele count: 1
allele frequency: 1.155989179941276e-5
allele num: 86506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.224T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1889T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.171T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.45T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1870T>C
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1757T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.378T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.72T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.121T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1888T>C
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19965
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

3-195410694-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410694
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410694
    reference: chr 3
allele count: 1
allele frequency: 1.15950095079078e-5
allele num: 86244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1891G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.380G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1872G>A
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1890G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.123G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1759G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.173G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.47G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.226G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.74G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

3-195410706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410706
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410706
    reference: chr 3
allele count: 1
allele frequency: 1.178050561930118e-5
allele num: 84886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.59C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.135C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1903C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1884C>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.392C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.86C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1771C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.238C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.185C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1902C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21817
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS

3-195410711-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410711
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410711
    reference: chr 3
allele count: 2
allele frequency: 2.389828888251601e-5
allele num: 83688
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1889C>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.190C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1776C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.140C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1908C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.91C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.397C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.243C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.64C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1907C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11095
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22680
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

3-195410714-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410714
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410714
    reference: chr 3
allele count: 1
allele frequency: 1.199990400076799e-5
allele num: 83334
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1892A>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.400A>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.193A>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.143A>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1911A>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1779A>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1910A>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.94A>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.246A>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.67A>T
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8879
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

3-195410719-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410719
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410719
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 81794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.251G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1915G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1916G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.405G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1784G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1897G>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.148G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.72G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.198G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.99G>T
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16222
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

3-195410721-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410721
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410721
    reference: chr 3
allele count: 2
allele frequency: 2.461114392596968e-5
allele num: 81264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.74C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1917C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1918C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.101C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1899C>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.150C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1786C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.407C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.200C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.253C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16245
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23496
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

3-195410722-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410722
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410722
    reference: chr 3
allele count: 2
allele frequency: 2.48015873015873e-5
allele num: 80640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1787G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1918G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1900G>A
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.151G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.102G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.408G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.254G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1919G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.75G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.201G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8878
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3858
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

3-195410724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410724
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410724
    reference: chr 3
allele count: 3
allele frequency: 3.735059760956175e-5
allele num: 80320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1921C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1920C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.203C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.104C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.256C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1902C>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.153C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.410C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.77C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1789C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15290
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

3-195410725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410725
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410725
    reference: chr 3
allele count: 5
allele frequency: 6.25e-5
allele num: 80000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1790G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.204G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.78G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.154G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1922G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1921G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1903G>A
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.411G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.105G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.257G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9488
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

3-195410729-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410729
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410729
    reference: chr 3
allele count: 2
allele frequency: 2.542006660057449e-5
allele num: 78678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1926C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.109C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.158C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.415C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1794C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.82C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1907C>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.261C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1925C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.208C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15980
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4846
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

3-195410737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410737
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410737
    reference: chr 3
allele count: 2
allele frequency: 2.639776146982736e-5
allele num: 75764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+1G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+1G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1933G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+1G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+1G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+1G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+1G>A
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1934G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+1G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+1G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4686
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 6.75e1
  variant carriers: 0
hgvs: n.1914+1G>A
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-195410742-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410742
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410742
    reference: chr 3
allele count: 15
allele frequency: 2.076296993521953e-4
allele num: 72244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1938T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+6T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+6T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+6T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+6T>C
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1939T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+6T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+6T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+6T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+6T>C
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14993
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17774
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3812
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 5.25e1
  variant carriers: 1
hgvs: n.1914+6T>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

3-195410749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410749
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410749
    reference: chr 3
allele count: 1
allele frequency: 1.445880685925797e-5
allele num: 69162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+13C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+13C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+13C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1946C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+13C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+13C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+13C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+13C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+13C>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1945C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14381
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-195410751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410751
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410751
    reference: chr 3
allele count: 26470
allele frequency: 3.937347533765693e-1
allele num: 67228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+15C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1947C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+15C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+15C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+15C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+15C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1948C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+15C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+15C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+15C>T
  variant of: http://identifiers.org/hgnc/27408
canonical: false
consequence: non coding transcript exon
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 2.75e1
  variant carriers: 894
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 1.75e1
  variant carriers: 5508
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 2.25e1
  variant carriers: 2170
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.25e1
  variant carriers: 441
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 7280
  bin: 9.75e1
  variant carriers: 5405
genotype depth: GenotypeDepth
  all individuals: 15296
  bin: 1.25e1
  variant carriers: 9497
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 2.5e0
  variant carriers: 685
genotype depth: GenotypeDepth
  all individuals: 17366
  bin: 7.5e0
  variant carriers: 7228
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 246
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 3.25e1
  variant carriers: 330
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 5.25e1
  variant carriers: 556
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 8.75e1
  variant carriers: 1189
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 8.25e1
  variant carriers: 1261
num of homozygotes: 543
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-195410752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410752
    reference: chr 3
allele count: 2
allele frequency: 3.478018920422927e-5
allele num: 57504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+16G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1948G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+16G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+16G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+16G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1949G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+16G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+16G>A
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+16G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+16G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20579
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

3-195410756-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410756
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410756
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 55798
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1952T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+20T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+20T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+20T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+20T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+20T>G
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+20T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1953T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+20T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+20T>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11342
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

http://identifiers.org/exac.variant/3-195410760-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410760
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410760
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 52104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+24C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1957C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+24C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+24C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+24C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1956C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+24C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+24C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+24C>A
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+24C>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12642
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

3-195410761-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410761
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410761
    reference: chr 3
allele count: 565
allele frequency: 1.086287779743136e-2
allele num: 52012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+25A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+25A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1957A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+25A>G
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+25A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+25A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+25A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1958A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+25A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+25A>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 1.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 12870
  bin: 1.25e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 9.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 20784
  bin: 7.5e0
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 3.75e1
  variant carriers: 3
num of homozygotes: 1
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-195410768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410768
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410768
    reference: chr 3
allele count: 1
allele frequency: 2.010858636637844e-5
allele num: 49730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1964A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+32A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+32A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+32A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+32A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+32A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+32A>G
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1965A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+32A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+32A>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13610
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-195410770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410770
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410770
    reference: chr 3
allele count: 22
allele frequency: 4.595204277717437e-4
allele num: 47876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+34C>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+34C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1966C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+34C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1967C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+34C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+34C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+34C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+34C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+34C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11352
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8711
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14379
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

3-195410772-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410772
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410772
    reference: chr 3
allele count: 1
allele frequency: 2.258764004336827e-5
allele num: 44272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+36C>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+36C>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1968C>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+36C>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+36C>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1969C>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+36C>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+36C>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+36C>G
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+36C>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10212
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

3-195410778-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410778
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410778
    reference: chr 3
allele count: 6
allele frequency: 1.383380983122752e-4
allele num: 43372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1975C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+42C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+42C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+42C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+42C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+42C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+42C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1974C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+42C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+42C>T
  variant of: http://identifiers.org/hgnc/27408
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9485
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23139
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5185
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

3-195410779-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410779
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410779
    reference: chr 3
allele count: 1
allele frequency: 2.302025782688766e-5
allele num: 43440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+43G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+43G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+43G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+43G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+43G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+43G>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+43G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+43G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1976G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1975G>T
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5907
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14705
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

3-195410782-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410782
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410782
    reference: chr 3
allele count: 1
allele frequency: 2.3285055651283e-5
allele num: 42946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1979C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+46C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+46C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+46C>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+46C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+46C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+46C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1978C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+46C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+46C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23543
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8704
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-195410783-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410783
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410783
    reference: chr 3
allele count: 1
allele frequency: 2.36854571293226e-5
allele num: 42220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1979C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+47C>A
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+47C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+47C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+47C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+47C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1980C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+47C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+47C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+47C>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23713
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6210
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

3-195410784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410784
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410784
    reference: chr 3
allele count: 1
allele frequency: 2.366639844748426e-5
allele num: 42254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+48C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+48C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1981C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+48C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1980C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+48C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+48C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+48C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+48C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+48C>T
  variant of: http://identifiers.org/hgnc/27408
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23722
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

3-195410785-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410785
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410785
    reference: chr 3
allele count: 1
allele frequency: 2.433800623052959e-5
allele num: 41088
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+49G>A
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+49G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+49G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+49G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1981G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+49G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1982G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+49G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+49G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+49G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

3-195410785-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195410785
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195410785
    reference: chr 3
allele count: 2
allele frequency: 4.867601246105919e-5
allele num: 41088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608699
  gene symbol: LINC00969
  hgvsc: ENST00000608699.1:n.89+49G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215837
  ensembl transcript: ENST00000455183
  gene symbol: SDHAP2
  hgvsc: ENST00000455183.1:n.1914+49G>T
  variant of: http://identifiers.org/hgnc/27408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1801+49G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000414625
  gene symbol: LINC00969
  hgvsc: ENST00000414625.2:n.1981G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.422+49G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000601648
  gene symbol: LINC00969
  hgvsc: ENST00000601648.1:n.215+49G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.116+49G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000445430
  gene symbol: LINC00969
  hgvsc: ENST00000445430.1:n.1982G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+49G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.165+49G>T
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13566
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6198
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-195415377-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415377
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415377
    reference: chr 3
allele count: 2
allele frequency: 2.533569799847986e-4
allele num: 7894
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.203-27T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.123T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.423-27T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.232-27T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4641T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.500-27T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.500-27T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1802-27T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.288-27T>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2967
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-195415413-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415413
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415413
    reference: chr 3
allele count: 1
allele frequency: 8.163265306122449e-5
allele num: 12250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1811A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.212A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.509A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4677A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.432A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.159A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.509A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.297A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.241A>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

3-195415415-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415415
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415415
    reference: chr 3
allele count: 4
allele frequency: 3.256268316509281e-4
allele num: 12284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.243A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.161A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1813A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.214A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.299A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.511A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4679A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.434A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.511A>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

3-195415417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415417
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415417
    reference: chr 3
allele count: 1
allele frequency: 8.134049129656744e-5
allele num: 12294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.216G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4681G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.301G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.513G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1815G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.245G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.436G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.513G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.163G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5162
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

3-195415421-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415421
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415421
    reference: chr 3
allele count: 1
allele frequency: 8.147303242626691e-5
allele num: 12274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.249A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.220A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.517A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.305A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.517A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.440A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4685A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1819A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.167A>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

3-195415423-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415423
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415423
    reference: chr 3
allele count: 1669
allele frequency: 1.341424208326636e-1
allele num: 12442
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4687A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.222A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.519A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.519A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1821A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.442A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.169A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.307A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.251A>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 7.5e0
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 2.5e0
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 3.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 2.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 31
num of homozygotes: 354
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-195415450-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415450
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415448
    reference: chr 3
allele count: 14
allele frequency: 1.158748551564311e-3
allele num: 12082
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.279_280delAT
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4715_268+4716delAT
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.335_336delAT
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.197_198delAT
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.470_471delAT
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.547_548delAT
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1849_1850delAT
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.547_548delAT
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.250_251delAT
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 2
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: CAT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

3-195415457-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415457
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415457
    reference: chr 3
allele count: 9
allele frequency: 7.568113017154389e-4
allele num: 11892
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.5T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.285T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.553T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.256T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.203T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.476T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.553T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1855T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.341T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4721T>C
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-195415462-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415462
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415462
    reference: chr 3
allele count: 5
allele frequency: 4.317043688482128e-4
allele num: 11582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.290G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.558G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.346G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.10G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.481G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.261G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.208G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.558G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1860G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4726G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

3-195415470-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415470
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415470
    reference: chr 3
allele count: 21
allele frequency: 1.976284584980237e-3
allele num: 10626
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.269A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1868A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.566A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.489A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.18A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.566A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.216A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.354A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.298A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4734A>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 4
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

3-195415493-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415493
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415493
    reference: chr 3
allele count: 4
allele frequency: 5.091649694501018e-4
allele num: 7856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.41C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.377C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.589C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.239C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4757C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1891C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.512C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.292C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.321C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.589C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

3-195415497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415497
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415497
    reference: chr 3
allele count: 6
allele frequency: 7.698229407236335e-4
allele num: 7794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1895C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.325C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.516C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.45C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.381C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.593C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.243C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.296C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.593C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4761C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

3-195415498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415498
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415498
    reference: chr 3
allele count: 1
allele frequency: 1.305483028720627e-4
allele num: 7660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.46G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.244G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.382G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.517G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4762G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1896G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.297G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.594G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.326G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.594G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-195415523-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415523
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415523
    reference: chr 3
allele count: 14
allele frequency: 2.048580626280363e-3
allele num: 6834
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1921T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.322T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.407T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.619T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.71T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.269T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.619T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.542T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.351T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.6T>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4787T>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

3-195447983-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195447983
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195447983
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 27438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000455807
  gene symbol: LINC00969
  hgvsc: ENST00000455807.2:n.363-3568C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600288
  gene symbol: LINC00969
  hgvsc: ENST00000600288.1:n.378-3568C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000595086
  gene symbol: LINC00969
  hgvsc: ENST00000595086.1:n.211-8536C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600197
  gene symbol: LINC00969
  hgvsc: ENST00000600197.1:n.689-12038C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594446
  gene symbol: LINC00969
  hgvsc: ENST00000594446.1:n.211-8231C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000432194
  gene symbol: LINC00969
  hgvsc: ENST00000432194.3:n.262-1389C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597662
  gene symbol: LINC00969
  hgvsc: ENST00000597662.1:n.378-8231C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599566
  gene symbol: LINC00969
  hgvsc: ENST00000599566.1:n.211-3568C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176945
  ensembl protein: ENSP00000396774
  ensembl transcript: ENST00000436408
  gene symbol: MUC20
  hgvsc: ENST00000436408.1:c.76+29C>T
  variant of: http://identifiers.org/hgnc/23282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176945
  ensembl transcript: ENST00000485430
  gene symbol: MUC20
  hgvsc: ENST00000485430.1:n.133+29C>T
  variant of: http://identifiers.org/hgnc/23282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176945
  ensembl transcript: ENST00000480350
  gene symbol: MUC20
  hgvsc: ENST00000480350.1:n.109+29C>T
  variant of: http://identifiers.org/hgnc/23282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176945
  ensembl protein: ENSP00000325431
  ensembl transcript: ENST00000320736
  gene symbol: MUC20
  hgvsc: ENST00000320736.6:c.76+29C>T
  variant of: http://identifiers.org/hgnc/23282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176945
  ensembl protein: ENSP00000414350
  ensembl transcript: ENST00000447234
  gene symbol: MUC20
  hgvsc: ENST00000447234.2:c.76+29C>T
  variant of: http://identifiers.org/hgnc/23282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594976
  gene symbol: LINC00969
  hgvsc: ENST00000594976.1:n.378-1389C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18069
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

3-195415526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415526
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415526
    reference: chr 3
allele count: 1
allele frequency: 1.502403846153846e-4
allele num: 6656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.354C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.622C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.272C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.545C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.622C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.410C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.74C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4790C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.9C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.325C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1924C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

3-195415527-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415527
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415527
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 6592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.623T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.546T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4791T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.75T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1925T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.623T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.411T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.326T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.10T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.355T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.273T>C
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

3-195415529-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195415529
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195415529
    reference: chr 3
allele count: 1
allele frequency: 1.561036528254761e-4
allele num: 6406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.77C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.328C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000429897
  gene symbol: LINC00969
  hgvsc: ENST00000429897.1:n.1927C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.413C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.275C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000600527
  gene symbol: LINC00969
  hgvsc: ENST00000600527.1:n.548C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.12C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000598992
  gene symbol: LINC00969
  hgvsc: ENST00000598992.1:n.625C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.625C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.268+4793C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.357C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-195426230-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426230
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426230
    reference: chr 3
allele count: 38
allele frequency: 3.954790500176925e-4
allele num: 96086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8775T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+152T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8775T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+152T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8775T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8775T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+152T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+152T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8775T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+152T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+152T>C
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11627
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21306
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.25e1
  variant carriers: 5
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

3-195426231-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426231
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426231
    reference: chr 3
allele count: 5
allele frequency: 5.162622612287042e-5
allele num: 96850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8774G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+153G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8774G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8774G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+153G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+153G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8774G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+153G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+153G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+153G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8774G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29673
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

3-195426231-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426231
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426231
    reference: chr 3
allele count: 5
allele frequency: 5.162622612287042e-5
allele num: 96850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+153G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+153G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+153G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8774G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8774G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+153G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+153G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8774G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8774G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8774G>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+153G>T
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21543
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

3-195426241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426241
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426241
    reference: chr 3
allele count: 55
allele frequency: 4.763719512195122e-4
allele num: 115456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+163T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8764T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8764T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+163T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+163T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+163T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8764T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+163T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8764T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8764T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+163T>C
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14128
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8655
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24075
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

3-195426248-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426248
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426248
    reference: chr 3
allele count: 1
allele frequency: 8.739883584750651e-6
allele num: 114418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8757G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+170G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8757G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8757G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+170G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+170G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+170G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8757G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8757G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+170G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+170G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

3-195426254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426254
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426254
    reference: chr 3
allele count: 1
allele frequency: 8.811193740527967e-6
allele num: 113492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8751G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+176G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8751G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+176G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+176G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8751G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+176G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8751G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+176G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8751G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+176G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS

3-195426255-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426255
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426255
    reference: chr 3
allele count: 2
allele frequency: 1.766534765404183e-5
allele num: 113216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8750G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+177G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+177G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8750G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+177G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8750G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+177G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+177G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8750G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+177G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8750G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6444
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

3-195426256-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426256
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426256
    reference: chr 3
allele count: 1
allele frequency: 8.834702712253733e-6
allele num: 113190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8749G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+178G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8749G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+178G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+178G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8749G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8749G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+178G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8749G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+178G>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+178G>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12777
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS

3-195426263-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426263
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426261
    reference: chr 3
allele count: 1
allele frequency: 8.982304859426929e-6
allele num: 111330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+188_675+189delAG
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8739_653-8738delAG
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+188_394+189delAG
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+188_645+189delAG
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8739_597-8738delAG
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8739_515-8738delAG
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+188_169+189delAG
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8739_65-8738delAG
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+188_60+189delAG
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8739_152-8738delAG
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+188_1271+189delAG
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23276
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: AAG
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

3-195426264-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426264
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426264
    reference: chr 3
allele count: 1
allele frequency: 9.085127646043428e-6
allele num: 110070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8741A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8741A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8741A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+186A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+186A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+186A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8741A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+186A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+186A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8741A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+186A>G
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22509
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/3-195426269-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426269
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426269
    reference: chr 3
allele count: 1
allele frequency: 9.163719003720471e-6
allele num: 109126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+191C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+191C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8736C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8736C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8736C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+191C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+191C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8736C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+191C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+191C>A
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8736C>A
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

3-195426269-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426269
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426269
    reference: chr 3
allele count: 1
allele frequency: 9.163719003720471e-6
allele num: 109126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8736C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8736C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+191C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+191C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8736C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8736C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+191C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+191C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+191C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+191C>T
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8736C>T
  variant of: http://identifiers.org/hgnc/48729
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

3-195426276-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426276
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426276
    reference: chr 3
allele count: 2
allele frequency: 1.888823829401432e-5
allele num: 105886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+198A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+198A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8729A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+198A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+198A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+198A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8729A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+198A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207650
  ensembl transcript: ENST00000384917
  gene symbol: MIR570
  hgvsc: ENST00000384917.1:n.5A>G
  variant of: http://identifiers.org/hgnc/32826
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8729A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8729A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8729A>G
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

3-195426278-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426278
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426278
    reference: chr 3
allele count: 2
allele frequency: 1.89897455374098e-5
allele num: 105320
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207650
  ensembl transcript: ENST00000384917
  gene symbol: MIR570
  hgvsc: ENST00000384917.1:n.7A>G
  variant of: http://identifiers.org/hgnc/32826
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+200A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8727A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+200A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+200A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8727A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+200A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8727A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+200A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8727A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8727A>G
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+200A>G
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

3-195426281-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195426281
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195426281
    reference: chr 3
allele count: 10
allele frequency: 9.641342074816814e-5
allele num: 103720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000420851
  gene symbol: LINC00969
  hgvsc: ENST00000420851.2:n.515-8724T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000602127
  gene symbol: LINC00969
  hgvsc: ENST00000602127.1:n.653-8724T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451982
  gene symbol: LINC00969
  hgvsc: ENST00000451982.2:n.675+203T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207650
  ensembl transcript: ENST00000384917
  gene symbol: MIR570
  hgvsc: ENST00000384917.1:n.10T>C
  variant of: http://identifiers.org/hgnc/32826
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000431767
  gene symbol: LINC00969
  hgvsc: ENST00000431767.1:n.152-8724T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597482
  gene symbol: LINC00969
  hgvsc: ENST00000597482.1:n.1271+203T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000594715
  gene symbol: LINC00969
  hgvsc: ENST00000594715.1:n.394+203T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000599448
  gene symbol: LINC00969
  hgvsc: ENST00000599448.1:n.645+203T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000438608
  gene symbol: LINC00969
  hgvsc: ENST00000438608.1:n.60+203T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000597034
  gene symbol: LINC00969
  hgvsc: ENST00000597034.1:n.597-8724T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000451228
  gene symbol: LINC00969
  hgvsc: ENST00000451228.1:n.65-8724T>C
  variant of: http://identifiers.org/hgnc/48729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242086
  ensembl transcript: ENST00000608737
  gene symbol: LINC00969
  hgvsc: ENST00000608737.1:n.169+203T>C
  variant of: http://identifiers.org/hgnc/48729
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18105
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10061
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2487
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1979
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.468007629616785e-4
allele num: 11534
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 4.5e0

FS
type: SiteQuality
SIO_000300: 2.209e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

MQ
type: SiteQuality
SIO_000300: 5.846e1

VQSLOD
type: SiteQuality
SIO_000300: -2.508e0

DP
type: SiteQuality
SIO_000300: 2.113484e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

GenotypeQuality
all individuals: 514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2079
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16573
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19375
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8857
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7998
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.45602795573675e-4
allele num: 6868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

DP
type: SiteQuality
SIO_000300: 2.119999e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 4.059e0

MQ
type: SiteQuality
SIO_000300: 5.651e1

QD
type: SiteQuality
SIO_000300: 6.28e0

GenotypeQuality
all individuals: 615
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19207
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 326
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17999
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.560178051703475e-5
allele num: 11682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.357934449422306e-5
allele num: 42410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6952
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.514e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.133505e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.398e0

FS
type: SiteQuality
SIO_000300: 9.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.583e0

QD
type: SiteQuality
SIO_000300: 9.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

GenotypeQuality
all individuals: 1720
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18987
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18228
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8859
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11720
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.427755568246716e-4
allele num: 7004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.367e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.511e1

DP
type: SiteQuality
SIO_000300: 2.139757e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.13e-1

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8861
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44806
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.677008217340265e-4
allele num: 11926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7234
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 3.351e0

QD
type: SiteQuality
SIO_000300: 5.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.888e1

MQRankSum
type: SiteQuality
SIO_000300: 2.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.58e0

DP
type: SiteQuality
SIO_000300: 2.172806e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

GenotypeQuality
all individuals: 1543
bin: 1.75e1
variant carriers: 14

GenotypeQuality
all individuals: 329
bin: 8.25e1
variant carriers: 158

GenotypeQuality
all individuals: 2335
bin: 7.5e0
variant carriers: 14

GenotypeQuality
all individuals: 1284
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 848
bin: 5.75e1
variant carriers: 84

GenotypeQuality
all individuals: 413
bin: 7.25e1
variant carriers: 125

GenotypeQuality
all individuals: 1117
bin: 5.25e1
variant carriers: 110

GenotypeQuality
all individuals: 6890
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14384
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 902
bin: 4.75e1
variant carriers: 52

GenotypeQuality
all individuals: 803
bin: 4.25e1
variant carriers: 12

GenotypeQuality
all individuals: 203
bin: 8.75e1
variant carriers: 94

GenotypeQuality
all individuals: 339
bin: 9.25e1
variant carriers: 191

GenotypeQuality
all individuals: 484
bin: 7.75e1
variant carriers: 206

GenotypeQuality
all individuals: 9238
bin: 9.75e1
variant carriers: 2715

GenotypeQuality
all individuals: 1197
bin: 6.75e1
variant carriers: 172

Latino
type: Population
allele count: 363
allele frequency: 4.987633965375103e-2
allele num: 7278
num of homozygotes: 1

African
type: Population
allele count: 165
allele frequency: 2.408056042031523e-2
allele num: 6852
num of homozygotes: 0

Other
type: Population
allele count: 40
allele frequency: 7.142857142857142e-2
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 180
allele frequency: 4.682622268470343e-2
allele num: 3844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2120
allele frequency: 5.500207555002076e-2
allele num: 38544
num of homozygotes: 2

South Asian
type: Population
allele count: 877
allele frequency: 8.028194800439399e-2
allele num: 10924
num of homozygotes: 11

East Asian
type: Population
allele count: 267
allele frequency: 4.267902813299233e-2
allele num: 6256
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.31e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.559e0

QD
type: SiteQuality
SIO_000300: 2.57e0

FS
type: SiteQuality
SIO_000300: 7.199e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: -1.381e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

MQ
type: SiteQuality
SIO_000300: 5.366e1

DP
type: SiteQuality
SIO_000300: 2.367428e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

GenotypeQuality
all individuals: 14810
bin: 2.25e1
variant carriers: 13

GenotypeQuality
all individuals: 6316
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 883
bin: 4.25e1
variant carriers: 14

GenotypeQuality
all individuals: 972
bin: 4.75e1
variant carriers: 55

GenotypeQuality
all individuals: 9258
bin: 9.75e1
variant carriers: 2713

GenotypeQuality
all individuals: 413
bin: 7.25e1
variant carriers: 129

GenotypeQuality
all individuals: 1145
bin: 3.75e1
variant carriers: 22

GenotypeQuality
all individuals: 851
bin: 5.75e1
variant carriers: 83

GenotypeQuality
all individuals: 1381
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1753
bin: 2.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1533
bin: 1.75e1
variant carriers: 18

GenotypeQuality
all individuals: 337
bin: 9.25e1
variant carriers: 191

GenotypeQuality
all individuals: 1128
bin: 5.25e1
variant carriers: 111

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 96

GenotypeQuality
all individuals: 1187
bin: 6.75e1
variant carriers: 171

GenotypeQuality
all individuals: 465
bin: 7.75e1
variant carriers: 203

Other
type: Population
allele count: 40
allele frequency: 6.920415224913495e-2
allele num: 578
num of homozygotes: 0

Latino
type: Population
allele count: 365
allele frequency: 4.928436402916554e-2
allele num: 7406
num of homozygotes: 1

African
type: Population
allele count: 166
allele frequency: 2.427610412401287e-2
allele num: 6838
num of homozygotes: 0

South Asian
type: Population
allele count: 880
allele frequency: 7.992733878292461e-2
allele num: 11010
num of homozygotes: 11

European (Non-Finnish)
type: Population
allele count: 2126
allele frequency: 5.443187055148753e-2
allele num: 39058
num of homozygotes: 2

East Asian
type: Population
allele count: 268
allele frequency: 4.208542713567839e-2
allele num: 6368
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 180
allele frequency: 4.545454545454546e-2
allele num: 3960
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 5.356e1

FS
type: SiteQuality
SIO_000300: 6.856e0

VQSLOD
type: SiteQuality
SIO_000300: -1.476e0

MQRankSum
type: SiteQuality
SIO_000300: -3.559e0

QD
type: SiteQuality
SIO_000300: 2.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.658e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.04e-2

DP
type: SiteQuality
SIO_000300: 2.362414e6

GenotypeQuality
all individuals: 1795
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8884
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 726
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19395
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7298
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.149689583812371e-4
allele num: 8698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.762e0

VQSLOD
type: SiteQuality
SIO_000300: -2.046e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.20044e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.829e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

MQ
type: SiteQuality
SIO_000300: 5.565e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

QD
type: SiteQuality
SIO_000300: 3.5e0

GenotypeQuality
all individuals: 849
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20186
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8883
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 640
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19095
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.185314685314685e-5
allele num: 45760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7200
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.267e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQ
type: SiteQuality
SIO_000300: 5.386e1

QD
type: SiteQuality
SIO_000300: 3.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.355e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

DP
type: SiteQuality
SIO_000300: 2.195616e6

GenotypeQuality
all individuals: 604
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17368
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.217786648924373e-5
allele num: 45090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7020
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.66e1

DP
type: SiteQuality
SIO_000300: 2.164186e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.48e0

VQSLOD
type: SiteQuality
SIO_000300: -2.961e0

MQRankSum
type: SiteQuality
SIO_000300: -1.766e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

QD
type: SiteQuality
SIO_000300: 2.75e0

FS
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
all individuals: 370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2523
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
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variant carriers: 0

GenotypeQuality
all individuals: 463
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variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8881
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.493574188909859e-5
allele num: 44508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7156
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.133121e6

MQ
type: SiteQuality
SIO_000300: 5.5e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

FS
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.779e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

QD
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 1282
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23080
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
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variant carriers: 0

GenotypeQuality
all individuals: 352
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variant carriers: 0

GenotypeQuality
all individuals: 14304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.257030650476234e-5
allele num: 44306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.06e0

DP
type: SiteQuality
SIO_000300: 2.120531e6

FS
type: SiteQuality
SIO_000300: 5.28e0

MQRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.86e-1

MQ
type: SiteQuality
SIO_000300: 5.435e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.045e0

VQSLOD
type: SiteQuality
SIO_000300: -2.343e0

GenotypeQuality
all individuals: 325
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11560
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8878
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43546
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.501e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.024e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.253e1

DP
type: SiteQuality
SIO_000300: 2.0876e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
all individuals: 3144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10863
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8878
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1651
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3620
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.25e1
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GenotypeQuality
all individuals: 189
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GenotypeQuality
all individuals: 353
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
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GenotypeQuality
all individuals: 3404
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 939
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7814
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.075030750307503e-4
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43262
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

FS
type: SiteQuality
SIO_000300: 2.285e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.347e0

MQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

QD
type: SiteQuality
SIO_000300: 3.97e0

MQ
type: SiteQuality
SIO_000300: 5.561e1

DP
type: SiteQuality
SIO_000300: 2.07626e6

GenotypeQuality
all individuals: 432
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 3608
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variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
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variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
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variant carriers: 0

GenotypeQuality
all individuals: 378
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GenotypeQuality
all individuals: 23325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.289656951250967e-4
allele num: 7754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6988
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.508e1

QD
type: SiteQuality
SIO_000300: 5.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

DP
type: SiteQuality
SIO_000300: 2.065698e6

MQRankSum
type: SiteQuality
SIO_000300: 6.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.003e0

VQSLOD
type: SiteQuality
SIO_000300: -1.393e0

FS
type: SiteQuality
SIO_000300: 4.896e0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23527
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3986
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3274
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.023787226072299e-5
allele num: 42712
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.05e-1

MQ
type: SiteQuality
SIO_000300: 4.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

FS
type: SiteQuality
SIO_000300: 1.0298e1

QD
type: SiteQuality
SIO_000300: 4.84e0

MQRankSum
type: SiteQuality
SIO_000300: -3.05e0

VQSLOD
type: SiteQuality
SIO_000300: -3.196e0

DP
type: SiteQuality
SIO_000300: 2.058972e6

GenotypeQuality
all individuals: 990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.044899492767237e-5
allele num: 42584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.737619461337967e-4
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.123e0

VQSLOD
type: SiteQuality
SIO_000300: -2.219e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

FS
type: SiteQuality
SIO_000300: 7.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

MQ
type: SiteQuality
SIO_000300: 5.038e1

QD
type: SiteQuality
SIO_000300: 3.24e0

DP
type: SiteQuality
SIO_000300: 2.052697e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

GenotypeQuality
all individuals: 2296
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23050
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 8879
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variant carriers: 1

GenotypeQuality
all individuals: 3563
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 127
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.769627015167414e-5
allele num: 41932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4286
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.758e0

DP
type: SiteQuality
SIO_000300: 2.024047e6

VQSLOD
type: SiteQuality
SIO_000300: -1.312e0

MQ
type: SiteQuality
SIO_000300: 5.52e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

QD
type: SiteQuality
SIO_000300: 6.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

FS
type: SiteQuality
SIO_000300: 4.883e0

GenotypeQuality
all individuals: 739
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5942
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 258
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variant carriers: 0

GenotypeQuality
all individuals: 256
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 213
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GenotypeQuality
all individuals: 8878
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variant carriers: 1

GenotypeQuality
all individuals: 3756
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7046
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.403675970047651e-4
allele num: 5876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4134
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.634e0

DP
type: SiteQuality
SIO_000300: 1.985393e6

QD
type: SiteQuality
SIO_000300: 3.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.668e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.379e1

GenotypeQuality
all individuals: 602
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6695
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GenotypeQuality
all individuals: 2754
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
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GenotypeQuality
all individuals: 3005
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18051
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variant carriers: 0

GenotypeQuality
all individuals: 253
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GenotypeQuality
all individuals: 1223
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variant carriers: 0

GenotypeQuality
all individuals: 3122
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variant carriers: 0

GenotypeQuality
all individuals: 1047
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GenotypeQuality
all individuals: 143
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GenotypeQuality
all individuals: 255
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GenotypeQuality
all individuals: 8889
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 4165
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variant carriers: 0

GenotypeQuality
all individuals: 4807
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10904
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.007518796992481e-4
allele num: 6650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38284
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 2.036979003447195e-3
allele num: 6382
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

FS
type: SiteQuality
SIO_000300: 2.961e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.506e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.214e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.325e1

DP
type: SiteQuality
SIO_000300: 1.962481e6

QD
type: SiteQuality
SIO_000300: 8.67e0

GenotypeQuality
all individuals: 885
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4835
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7141
bin: 7.5e0
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GenotypeQuality
all individuals: 247
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GenotypeQuality
all individuals: 356
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GenotypeQuality
all individuals: 516
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GenotypeQuality
all individuals: 5493
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variant carriers: 0

GenotypeQuality
all individuals: 256
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GenotypeQuality
all individuals: 16111
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GenotypeQuality
all individuals: 2112
bin: 6.25e1
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GenotypeQuality
all individuals: 3006
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GenotypeQuality
all individuals: 123
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GenotypeQuality
all individuals: 561
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GenotypeQuality
all individuals: 8878
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variant carriers: 1

GenotypeQuality
all individuals: 3805
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.358038555118848e-5
allele num: 10686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 1.949898e6

MQ
type: SiteQuality
SIO_000300: 5.371e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.034e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.869e0

GenotypeQuality
all individuals: 1315
bin: 1.25e1
variant carriers: 487

GenotypeQuality
all individuals: 7438
bin: 2.5e0
variant carriers: 138

GenotypeQuality
all individuals: 550
bin: 3.75e1
variant carriers: 327

GenotypeQuality
all individuals: 1588
bin: 1.75e1
variant carriers: 746

GenotypeQuality
all individuals: 4560
bin: 7.5e0
variant carriers: 373

GenotypeQuality
all individuals: 648
bin: 4.75e1
variant carriers: 596

GenotypeQuality
all individuals: 896
bin: 7.25e1
variant carriers: 839

GenotypeQuality
all individuals: 1195
bin: 6.25e1
variant carriers: 522

GenotypeQuality
all individuals: 24569
bin: 9.75e1
variant carriers: 22136

GenotypeQuality
all individuals: 474
bin: 4.25e1
variant carriers: 425

GenotypeQuality
all individuals: 901
bin: 9.25e1
variant carriers: 863

GenotypeQuality
all individuals: 594
bin: 5.75e1
variant carriers: 561

GenotypeQuality
all individuals: 1174
bin: 7.75e1
variant carriers: 1117

GenotypeQuality
all individuals: 1069
bin: 2.75e1
variant carriers: 299

GenotypeQuality
all individuals: 7550
bin: 2.25e1
variant carriers: 640

GenotypeQuality
all individuals: 848
bin: 6.75e1
variant carriers: 713

Other
type: Population
allele count: 209
allele frequency: 4.034749034749035e-1
allele num: 518
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 1565
allele frequency: 4.250407387289517e-1
allele num: 3682
num of homozygotes: 25

African
type: Population
allele count: 2471
allele frequency: 4.103287944204583e-1
allele num: 6022
num of homozygotes: 57

Latino
type: Population
allele count: 1740
allele frequency: 3.151032234697573e-1
allele num: 5522
num of homozygotes: 13

European (Non-Finnish)
type: Population
allele count: 16269
allele frequency: 4.527215048975957e-1
allele num: 35936
num of homozygotes: 367

South Asian
type: Population
allele count: 3711
allele frequency: 3.487781954887218e-1
allele num: 10640
num of homozygotes: 74

East Asian
type: Population
allele count: 505
allele frequency: 1.028932355338223e-1
allele num: 4908
num of homozygotes: 3

FS
type: SiteQuality
SIO_000300: 4.183e0

VQSLOD
type: SiteQuality
SIO_000300: 3.753e1

MQ
type: SiteQuality
SIO_000300: 5.027e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

DP
type: SiteQuality
SIO_000300: 2.389475e6

QD
type: SiteQuality
SIO_000300: 1.041e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.872e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

GenotypeQuality
all individuals: 2318
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10481
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GenotypeQuality
all individuals: 587
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GenotypeQuality
all individuals: 8720
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variant carriers: 3

GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 200
bin: 4.75e1
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GenotypeQuality
all individuals: 604
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GenotypeQuality
all individuals: 2737
bin: 3.25e1
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GenotypeQuality
all individuals: 101
bin: 5.75e1
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GenotypeQuality
all individuals: 1034
bin: 3.75e1
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GenotypeQuality
all individuals: 181
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GenotypeQuality
all individuals: 127
bin: 5.25e1
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GenotypeQuality
all individuals: 157
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GenotypeQuality
all individuals: 2983
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3188
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.745318352059925e-4
allele num: 5340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28842
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 5.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

MQ
type: SiteQuality
SIO_000300: 5.051e1

VQSLOD
type: SiteQuality
SIO_000300: -1.482e0

DP
type: SiteQuality
SIO_000300: 1.907453e6

GenotypeQuality
all individuals: 485
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11495
bin: 7.5e0
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GenotypeQuality
all individuals: 240
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GenotypeQuality
all individuals: 3053
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GenotypeQuality
all individuals: 2763
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GenotypeQuality
all individuals: 2678
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GenotypeQuality
all individuals: 1983
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 23411
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8718
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3116
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.88949e6

QD
type: SiteQuality
SIO_000300: 9.26e0

MQ
type: SiteQuality
SIO_000300: 5.121e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.191e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8718
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12809
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20654
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3619
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3443
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4282
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

MQ
type: SiteQuality
SIO_000300: 4.948e1

MQRankSum
type: SiteQuality
SIO_000300: -2.063e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.913e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2

FS
type: SiteQuality
SIO_000300: 2.39e0

QD
type: SiteQuality
SIO_000300: 3.4e0

VQSLOD
type: SiteQuality
SIO_000300: -2.753e0

DP
type: SiteQuality
SIO_000300: 1.86168e6

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 9173
bin: 9.75e1
variant carriers: 587

GenotypeQuality
all individuals: 3389
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2659
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 155
bin: 7.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1038
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 12778
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 158
bin: 8.25e1
variant carriers: 24

GenotypeQuality
all individuals: 158
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1329
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 18

GenotypeQuality
all individuals: 2884
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 19

GenotypeQuality
all individuals: 3144
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 20906
bin: 2.25e1
variant carriers: 4

Latino
type: Population
allele count: 16
allele frequency: 3.727865796831314e-3
allele num: 4292
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 2.668308702791462e-3
allele num: 4872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 23
allele frequency: 7.839127471029312e-3
allele num: 2934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 475
allele frequency: 1.862745098039216e-2
allele num: 25500
num of homozygotes: 1

South Asian
type: Population
allele count: 38
allele frequency: 3.917525773195876e-3
allele num: 9700
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 4.916e1

FS
type: SiteQuality
SIO_000300: 5.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.362e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

DP
type: SiteQuality
SIO_000300: 1.861018e6

GenotypeQuality
all individuals: 8704
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13940
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.154204054503157e-5
allele num: 24072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -2.828e0

MQ
type: SiteQuality
SIO_000300: 4.708e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

QD
type: SiteQuality
SIO_000300: 3.27e0

DP
type: SiteQuality
SIO_000300: 1.832404e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.58e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e0

GenotypeQuality
all individuals: 2841
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 139
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2726
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4821
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1096
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3666
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 4.658385093167702e-3
allele num: 4508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22972
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.670940170940171e-4
allele num: 3744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.038e0

MQ
type: SiteQuality
SIO_000300: 4.95e1

DP
type: SiteQuality
SIO_000300: 1.820274e6

VQSLOD
type: SiteQuality
SIO_000300: -1.519e0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 9.340000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.77e-2

QD
type: SiteQuality
SIO_000300: 2.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

GenotypeQuality
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14497
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5840
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6271
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8704
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 181
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.785604900459418e-5
allele num: 20896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2636
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.804254e6

QD
type: SiteQuality
SIO_000300: 2.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.94e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.277e0

MQ
type: SiteQuality
SIO_000300: 5.206e1

VQSLOD
type: SiteQuality
SIO_000300: -1.545e0

FS
type: SiteQuality
SIO_000300: 4.779e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
all individuals: 14632
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15114
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5945
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2578
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8706
bin: 9.75e1
variant carriers: 6

South Asian
type: Population
allele count: 4
allele frequency: 4.330879168471199e-4
allele num: 9236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.798157946306095e-5
allele num: 20412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 1.7981e6

QD
type: SiteQuality
SIO_000300: 4.55e0

FS
type: SiteQuality
SIO_000300: 1.865e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.096e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.01e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.943e-1

GenotypeQuality
all individuals: 186
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8705
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4753
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2641
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15617
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.887585532746823e-5
allele num: 20460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3538
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.797707e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.365e0

MQ
type: SiteQuality
SIO_000300: 5.004e1

GenotypeQuality
all individuals: 1156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5470
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14751
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
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GenotypeQuality
all individuals: 6080
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14530
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3132
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.860411899313501e-4
allele num: 3496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2550
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.531e0

MQRankSum
type: SiteQuality
SIO_000300: -3.401e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 4.835e1

FS
type: SiteQuality
SIO_000300: 3.845e0

DP
type: SiteQuality
SIO_000300: 1.795865e6

QD
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.059704513256426e-5
allele num: 19764
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.05e-2

QD
type: SiteQuality
SIO_000300: 7.14e0

VQSLOD
type: SiteQuality
SIO_000300: -1.481e0

BaseQRankSum
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SIO_000300: -1.254e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.138e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.794845e6

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.04999495000505e-5
allele num: 19802
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3980
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.5e0

DP
type: SiteQuality
SIO_000300: 1.795245e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 4.988e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.545e0

FS
type: SiteQuality
SIO_000300: 5.82e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.577319587628866e-4
allele num: 3880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19136
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.268e0

MQ
type: SiteQuality
SIO_000300: 5.192e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

FS
type: SiteQuality
SIO_000300: 5.181e0

QD
type: SiteQuality
SIO_000300: 3.87e0

DP
type: SiteQuality
SIO_000300: 1.794771e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.25e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 293
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.012841091492777e-4
allele num: 2492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3880
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.026634382566586e-4
allele num: 3304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2760
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.794771e6

QD
type: SiteQuality
SIO_000300: 3.87e0

FS
type: SiteQuality
SIO_000300: 5.181e0

MQ
type: SiteQuality
SIO_000300: 5.192e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.81e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.268e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2426
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.462293618920125e-4
allele num: 4482
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.53e-2

DP
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SIO_000300: 1.05837e5

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.98e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.779e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

South Asian
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allele frequency: 1.401345291479821e-4
allele num: 7136
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 198
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.59e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.46058e5

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 2.3e1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 5.595970900951316e-4
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East Asian
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DP
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.706e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.475e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.398601398601399e-4
allele num: 7150
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 3522
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 576
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African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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QD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 490
bin: 6.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 65
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
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GenotypeQuality
all individuals: 5080
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.400560224089636e-4
allele num: 7140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3522
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.85e0

FS
type: SiteQuality
SIO_000300: 6.577e0

VQSLOD
type: SiteQuality
SIO_000300: -7.319e0

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

MQ
type: SiteQuality
SIO_000300: 2.448e1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

DP
type: SiteQuality
SIO_000300: 1.46352e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.63e-1

GenotypeQuality
all individuals: 351
bin: 6.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1397
bin: 7.5e0
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GenotypeQuality
all individuals: 53
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 37
bin: 8.25e1
variant carriers: 19

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 12

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 22

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1176
bin: 9.75e1
variant carriers: 1167

GenotypeQuality
all individuals: 4327
bin: 6.25e1
variant carriers: 12

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 13

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 61
bin: 7.75e1
variant carriers: 19

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 5

South Asian
type: Population
allele count: 549
allele frequency: 7.682619647355164e-2
allele num: 7146
num of homozygotes: 104

Latino
type: Population
allele count: 11
allele frequency: 6.25e-2
allele num: 176
num of homozygotes: 3

African
type: Population
allele count: 21
allele frequency: 3.888888888888889e-2
allele num: 540
num of homozygotes: 4

Other
type: Population
allele count: 31
allele frequency: 2.152777777777778e-1
allele num: 144
num of homozygotes: 9

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 130
allele frequency: 1.940298507462687e-1
allele num: 670
num of homozygotes: 16

European (Non-Finnish)
type: Population
allele count: 927
allele frequency: 2.598094170403588e-1
allele num: 3568
num of homozygotes: 218

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.815e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.487e1

DP
type: SiteQuality
SIO_000300: 2.01552e5

MQ
type: SiteQuality
SIO_000300: 2.571e1

QD
type: SiteQuality
SIO_000300: 1.274e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.597e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 1462
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GenotypeQuality
all individuals: 22
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variant carriers: 11

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 4809
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1023
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.008032128514056e-3
allele num: 498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 3.155479059093517e-3
allele num: 3486
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.352941176470588e-3
allele num: 136
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.681818181818182e-3
allele num: 176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7056
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

QD
type: SiteQuality
SIO_000300: 2.003e1

MQ
type: SiteQuality
SIO_000300: 2.627e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

DP
type: SiteQuality
SIO_000300: 1.48814e5

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 1139
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GenotypeQuality
all individuals: 535
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GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 4551
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.294219154443486e-3
allele num: 6954
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.886e0

DP
type: SiteQuality
SIO_000300: 1.44505e5

FS
type: SiteQuality
SIO_000300: 4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 2.433e1

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.5e0
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GenotypeQuality
all individuals: 75
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 1413
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.971291866028708e-4
allele num: 3344
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.936857562408223e-4
allele num: 6810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.323e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.492e0

DP
type: SiteQuality
SIO_000300: 1.40146e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

FS
type: SiteQuality
SIO_000300: 1.0755e1

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 2.475e1

QD
type: SiteQuality
SIO_000300: 5.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 7.5e0
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GenotypeQuality
all individuals: 429
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
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GenotypeQuality
all individuals: 143
bin: 2.75e1
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GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.381620931716656e-4
allele num: 3134
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 3.052699228791774e-3
allele num: 6224
num of homozygotes: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -4.486e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.28808e5

MQ
type: SiteQuality
SIO_000300: 2.584e1

GenotypeQuality
all individuals: 172
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 6.25e1
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GenotypeQuality
all individuals: 192
bin: 2.5e0
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GenotypeQuality
all individuals: 286
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 183
bin: 1.75e1
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GenotypeQuality
all individuals: 2282
bin: 2.25e1
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GenotypeQuality
all individuals: 180
bin: 3.75e1
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GenotypeQuality
all individuals: 112
bin: 4.25e1
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 1322
bin: 7.5e0
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 11
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variant carriers: 2

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.503401360544217e-4
allele num: 2352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.25e-2
allele num: 80
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.182453077258839e-4
allele num: 4582
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.45e0

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.749e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

DP
type: SiteQuality
SIO_000300: 9.3301e4

VQSLOD
type: SiteQuality
SIO_000300: -5.632e0

GenotypeQuality
all individuals: 158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
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GenotypeQuality
all individuals: 1275
bin: 7.5e0
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GenotypeQuality
all individuals: 120
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GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 97
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GenotypeQuality
all individuals: 1698
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GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 174
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 2435
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.25e-2
allele num: 80
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2336
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 1.04602510460251e-2
allele num: 478
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.72e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

FS
type: SiteQuality
SIO_000300: 5.111e0

QD
type: SiteQuality
SIO_000300: 4.21e0

MQ
type: SiteQuality
SIO_000300: 2.541e1

VQSLOD
type: SiteQuality
SIO_000300: -5.569e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.11e-1

DP
type: SiteQuality
SIO_000300: 9.1502e4

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
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GenotypeQuality
all individuals: 1259
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GenotypeQuality
all individuals: 295
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GenotypeQuality
all individuals: 152
bin: 6.75e1
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GenotypeQuality
all individuals: 132
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 1573
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GenotypeQuality
all individuals: 180
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variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 3.25e1
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.220248667850799e-4
allele num: 4504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

VQSLOD
type: SiteQuality
SIO_000300: -8.087e0

DP
type: SiteQuality
SIO_000300: 8.9918e4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.657e0

QD
type: SiteQuality
SIO_000300: 3.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.464e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 7.5e0
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GenotypeQuality
all individuals: 2929
bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 9.75e1
variant carriers: 10

African
type: Population
allele count: 13
allele frequency: 3.009259259259259e-2
allele num: 432
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.162790697674419e-2
allele num: 86
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.109e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.397e0

MQ
type: SiteQuality
SIO_000300: 2.23e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

DP
type: SiteQuality
SIO_000300: 8.0161e4

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

QD
type: SiteQuality
SIO_000300: 6.08e0

GenotypeDepth
all individuals: 195
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 117
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variant carriers: 0

GenotypeDepth
all individuals: 162
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1901
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 795
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variant carriers: 0

GenotypeQuality
all individuals: 1164
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 2.5e0
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GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3893
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 3693
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14474
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.71387e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.82e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.18e1

QD
type: SiteQuality
SIO_000300: 4.44e0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
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variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.534211860111505e-4
allele num: 3946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQ
type: SiteQuality
SIO_000300: 2.32e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.158e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.83e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

DP
type: SiteQuality
SIO_000300: 7.8092e4

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2966
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3912
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.75e-2

QD
type: SiteQuality
SIO_000300: 1.635e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.502e0

DP
type: SiteQuality
SIO_000300: 7.6908e4

GenotypeQuality
all individuals: 1304
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 93
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 89
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variant carriers: 1

GenotypeQuality
all individuals: 1129
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
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GenotypeQuality
all individuals: 2958
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 286
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variant carriers: 0

GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 14
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variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.756756756756757e-3
allele num: 148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.95e-2

QD
type: SiteQuality
SIO_000300: 3.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.6636e4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

MQRankSum
type: SiteQuality
SIO_000300: -1.001e0

VQSLOD
type: SiteQuality
SIO_000300: -5.899e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

GenotypeQuality
all individuals: 1285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.25e1
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GenotypeQuality
all individuals: 1355
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GenotypeQuality
all individuals: 302
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GenotypeQuality
all individuals: 530
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GenotypeQuality
all individuals: 9500
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variant carriers: 2

GenotypeQuality
all individuals: 230
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GenotypeQuality
all individuals: 716
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variant carriers: 2

GenotypeQuality
all individuals: 826
bin: 4.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 210
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2808
bin: 2.25e1
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GenotypeQuality
all individuals: 4039
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 596
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 514
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GenotypeQuality
all individuals: 906
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variant carriers: 2

GenotypeQuality
all individuals: 29115
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5261
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5224
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.012072434607646e-4
allele num: 9940
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.580123156236575e-4
allele num: 13966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.635590448151783e-4
allele num: 48912
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.377717391304348e-3
allele num: 8832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.347417840375587e-4
allele num: 8520
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.26e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.091e0

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

QD
type: SiteQuality
SIO_000300: 9.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.192e0

DP
type: SiteQuality
SIO_000300: 2.031015e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e0

MQ
type: SiteQuality
SIO_000300: 5.598e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.89e-1

GenotypeQuality
all individuals: 2890
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
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GenotypeQuality
all individuals: 1304
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 139
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GenotypeQuality
all individuals: 764
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GenotypeQuality
all individuals: 9174
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GenotypeQuality
all individuals: 296
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GenotypeQuality
all individuals: 168
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GenotypeQuality
all individuals: 4036
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 340
bin: 9.25e1
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GenotypeQuality
all individuals: 510
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GenotypeQuality
all individuals: 5324
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
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GenotypeQuality
all individuals: 789
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GenotypeQuality
all individuals: 723
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 7.75e1
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GenotypeQuality
all individuals: 436
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.089324618736383e-4
allele num: 9180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.13140348024069e-5
allele num: 49192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14014
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.731e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: -1.426e0

FS
type: SiteQuality
SIO_000300: 2.95e0

QD
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 2.021332e6

GenotypeQuality
all individuals: 2890
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5324
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.016425435030086e-4
allele num: 49192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.71e-1

FS
type: SiteQuality
SIO_000300: 2.95e0

ReadPosRankSum
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SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 5.731e1

DP
type: SiteQuality
SIO_000300: 2.021332e6

VQSLOD
type: SiteQuality
SIO_000300: -1.426e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 52

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15680
num of homozygotes: 0

African
type: Population
allele count: 52
allele frequency: 5.308289097590854e-3
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63228
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.690100430416069e-4
allele num: 11152
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.05e0

VQSLOD
type: SiteQuality
SIO_000300: -3.394e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

QD
type: SiteQuality
SIO_000300: 6.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-1

MQ
type: SiteQuality
SIO_000300: 5.643e1

DP
type: SiteQuality
SIO_000300: 1.86665e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4766
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.419309282321222e-5
allele num: 15578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.629e0

MQ
type: SiteQuality
SIO_000300: 5.807e1

QD
type: SiteQuality
SIO_000300: 6.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.451e0

DP
type: SiteQuality
SIO_000300: 1.852666e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10990
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.46830530401035e-5
allele num: 15460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62036
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.091e0

QD
type: SiteQuality
SIO_000300: 5.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e0

MQ
type: SiteQuality
SIO_000300: 5.586e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.842141e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

FS
type: SiteQuality
SIO_000300: 1.0354e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4751
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variant carriers: 2

GenotypeQuality
all individuals: 493
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15442
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.383222116301239e-4
allele num: 8392
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.835275e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.085e0

MQ
type: SiteQuality
SIO_000300: 5.735e1

MQRankSum
type: SiteQuality
SIO_000300: 2.19e0

QD
type: SiteQuality
SIO_000300: 1.95e0

FS
type: SiteQuality
SIO_000300: 1.096e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.049e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616396728413022e-5
allele num: 61866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9600
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.753e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.005e0

MQ
type: SiteQuality
SIO_000300: 5.771e1

QD
type: SiteQuality
SIO_000300: 7.39e0

MQRankSum
type: SiteQuality
SIO_000300: -1.269e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.202e0

DP
type: SiteQuality
SIO_000300: 1.834565e6

FS
type: SiteQuality
SIO_000300: 2.103e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15226
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.204529029149603e-4
allele num: 8302
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

QD
type: SiteQuality
SIO_000300: 2.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.866e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

FS
type: SiteQuality
SIO_000300: 2.241e0

VQSLOD
type: SiteQuality
SIO_000300: -7.775e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

DP
type: SiteQuality
SIO_000300: 1.803222e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4741
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variant carriers: 1

GenotypeQuality
all individuals: 598
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.609385327164574e-5
allele num: 15130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.802e1

VQSLOD
type: SiteQuality
SIO_000300: -2.037e0

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

QD
type: SiteQuality
SIO_000300: 7.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

FS
type: SiteQuality
SIO_000300: 4.407e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.777661e6

GenotypeQuality
all individuals: 207
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33247
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.64982045484772e-5
allele num: 15038
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

DP
type: SiteQuality
SIO_000300: 1.760558e6

BaseQRankSum
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SIO_000300: -1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -2.478e0

MQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

MQ
type: SiteQuality
SIO_000300: 5.344e1

FS
type: SiteQuality
SIO_000300: 1.3388e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 4.25e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10399
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15038
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.085069444444444e-4
allele num: 9216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10526
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

FS
type: SiteQuality
SIO_000300: 1.3388e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -2.478e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.344e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

QD
type: SiteQuality
SIO_000300: 4.25e0

DP
type: SiteQuality
SIO_000300: 1.760558e6

GenotypeDepth
all individuals: 1479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4722
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.25281884239539e-4
allele num: 7982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.734003814808392e-5
allele num: 57670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

DP
type: SiteQuality
SIO_000300: 1.690441e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

FS
type: SiteQuality
SIO_000300: 2.271e0

VQSLOD
type: SiteQuality
SIO_000300: -1.652e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 3.38e0

MQ
type: SiteQuality
SIO_000300: 5.719e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-2

GenotypeDepth
all individuals: 306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29270
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variant carriers: 0

GenotypeQuality
all individuals: 524
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variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4417
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.487723214285714e-5
allele num: 57344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14746
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.306e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.499e0

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQ
type: SiteQuality
SIO_000300: 5.516e1

QD
type: SiteQuality
SIO_000300: 3.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.678321e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0