16-19710917-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19710917
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 19710917
    reference: chr 16
allele count: 4
allele frequency: 3.299404457495422e-5
allele num: 121234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103544
  ensembl protein: ENSP00000251143
  ensembl transcript: ENST00000251143
  gene symbol: C16orf62
  hgvsc: ENST00000251143.5:c.2740G>A
  hgvsp: ENSP00000251143.5:p.Val914Ile
  variant of: http://identifiers.org/hgnc/24641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103544
  ensembl protein: ENSP00000442468
  ensembl transcript: ENST00000542263
  gene symbol: C16orf62
  hgvsc: ENST00000542263.1:c.2728G>A
  hgvsp: ENSP00000442468.1:p.Val910Ile
  variant of: http://identifiers.org/hgnc/24641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103544
  ensembl protein: ENSP00000395973
  ensembl transcript: ENST00000417362
  gene symbol: C16orf62
  hgvsc: ENST00000417362.2:c.2461G>A
  hgvsp: ENSP00000395973.2:p.Val821Ile
  variant of: http://identifiers.org/hgnc/24641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103544
  ensembl protein: ENSP00000457973
  ensembl transcript: ENST00000543152
  gene symbol: C16orf62
  hgvsc: ENST00000543152.1:c.1987G>A
  hgvsp: ENSP00000457973.1:p.Val663Ile
  variant of: http://identifiers.org/hgnc/24641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103544
  ensembl protein: ENSP00000398009
  ensembl transcript: ENST00000448695
  gene symbol: C16orf62
  hgvsc: ENST00000448695.1:c.2290G>A
  hgvsp: ENSP00000398009.1:p.Val764Ile
  variant of: http://identifiers.org/hgnc/24641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103544
  ensembl protein: ENSP00000400815
  ensembl transcript: ENST00000438132
  gene symbol: C16orf62
  hgvsc: ENST00000438132.3:c.3007G>A
  hgvsp: ENSP00000400815.3:p.Val1003Ile
  variant of: http://identifiers.org/hgnc/24641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103544
  ensembl protein: ENSP00000457779
  ensembl transcript: ENST00000542027
  gene symbol: C16orf62
  hgvsc: ENST00000542027.3:c.110G>A
  hgvsp: ENSP00000457779.2:p.Val38Ile
  variant of: http://identifiers.org/hgnc/24641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103544
  ensembl transcript: ENST00000566850
  gene symbol: C16orf62
  hgvsc: ENST00000566850.1:n.220G>A
  variant of: http://identifiers.org/hgnc/24641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4562
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val1003Ile
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

12-124914240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914240
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914240
    reference: chr 12
allele count: 8
allele frequency: 1.366026910730141e-4
allele num: 58564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1065G>A
  hgvsp: ENST00000429285.2:c.1065G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1068G>A
  hgvsp: ENST00000420698.1:c.1068G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1068G>A
  hgvsp: ENST00000356219.3:c.1068G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1068G>A
  hgvsp: ENST00000405201.1:c.1068G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-223G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1068G>A
  hgvsp: ENST00000397355.1:c.1068G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1068G>A
  hgvsp: ENST00000458234.1:c.1068G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1065G>A
  hgvsp: ENST00000404621.1:c.1065G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.40G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln356Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

12-124914269-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914269
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914269
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 45900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1056-20G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1056-17G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.28-17G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1056-17G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-235-17G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1056-17G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1056-17G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1056-20G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1056-17G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24908
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

12-124914281-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914281
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914281
    reference: chr 12
allele count: 2
allele frequency: 5.406866720735334e-5
allele num: 36990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1056-29G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-235-29G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1056-29G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1056-29G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1056-32G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1056-29G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1056-29G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.28-29G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1056-32G>C
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23437
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10201
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3721
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

12-124914281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914281
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914281
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 36990
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1056-29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1056-32G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1056-32G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.28-29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1056-29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1056-29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-235-29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1056-29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1056-29G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23437
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17771
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum

12-124914282-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914282
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914282
    reference: chr 12
allele count: 4
allele frequency: 1.128095211235828e-4
allele num: 35458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1056-30C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.28-30C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1056-30C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1056-30C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-235-30C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1056-30C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1056-30C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1056-33C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1056-33C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23270
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9623
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4209
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

12-124914290-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914290
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914290
    reference: chr 12
allele count: 1
allele frequency: 3.397431541754433e-5
allele num: 29434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.28-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1056-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1056-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1056-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1056-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1056-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-235-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1056-41C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1056-41C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19878
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6505
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

12-124914292-TGGTCGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914292
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914286
    reference: chr 12
allele count: 1
allele frequency: 3.423485107839781e-5
allele num: 29210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1056-49_1056-44delCCGACC
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1056-46_1056-41delCCGACC
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1056-46_1056-41delCCGACC
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1056-46_1056-41delCCGACC
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.28-46_28-41delCCGACC
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1056-46_1056-41delCCGACC
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1056-49_1056-44delCCGACC
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1056-46_1056-41delCCGACC
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-235-46_-235-41delCCGACC
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6632
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20630
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: TGGTCGG
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

12-124914293-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914293
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914293
    reference: chr 12
allele count: 1
allele frequency: 3.505082369435682e-5
allele num: 28530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1056-41C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1056-44C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1056-41C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1056-41C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1056-41C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-235-41C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1056-44C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1056-41C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.28-41C>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6818
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

12-124914294-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914294
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914294
    reference: chr 12
allele count: 92
allele frequency: 3.277053501460426e-3
allele num: 28074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1056-45C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1056-42C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1056-42C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-235-42C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1056-42C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.28-42C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1056-42C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1056-45C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1056-42C>G
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 1.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20046
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 24383
  bin: 7.5e0
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6944
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.75e1
  variant carriers: 4
num of homozygotes: 1
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

12-124914294-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914294
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914294
    reference: chr 12
allele count: 73
allele frequency: 2.600270713115338e-3
allele num: 28074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1056-42C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1056-42C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1056-45C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1056-45C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.28-42C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1056-42C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1056-42C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-235-42C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1056-42C>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24383
  bin: 7.5e0
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20046
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 1.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20403
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 6.75e1
  variant carriers: 3
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

12-124914296-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914296
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914296
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 27178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1056-44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1056-47G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1056-44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1056-44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-235-44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1056-44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.28-44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1056-44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1056-47G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24643
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20191
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5891
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

12-124914297-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124914297
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124914297
    reference: chr 12
allele count: 2
allele frequency: 7.641754546843955e-5
allele num: 26172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1056-45C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1056-45C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1056-48C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1056-45C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1056-45C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-235-45C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1056-48C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1056-45C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.28-45C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24904
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20266
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/12-124915119-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915119
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915119
    reference: chr 12
allele count: 2
allele frequency: 1.833247781770184e-5
allele num: 109096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+42G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+42G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+42G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+42G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+42G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+42G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+42G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+42G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+42G>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4076
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12384
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

12-124915119-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915119
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915119
    reference: chr 12
allele count: 44
allele frequency: 4.033145119894405e-4
allele num: 109096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+42G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+42G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+42G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+42G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+42G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+42G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+42G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+42G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+42G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10317
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4076
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

12-124915120-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915120
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915120
    reference: chr 12
allele count: 1
allele frequency: 9.144278424989484e-6
allele num: 109358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+41C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+41C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+41C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+41C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+41C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+41C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+41C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+41C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+41C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4079
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

12-124915126-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915126
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915126
    reference: chr 12
allele count: 3
allele frequency: 2.735828408842197e-5
allele num: 109656
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+35A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+35A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+35A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+35A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+35A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+35A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+35A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+35A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+35A>G
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

12-124915129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915129
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915129
    reference: chr 12
allele count: 5
allele frequency: 4.555310581075418e-5
allele num: 109762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+32G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+32G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+32G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+32G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+32G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+32G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+32G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+32G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+32G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

12-124915130-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915130
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915130
    reference: chr 12
allele count: 1
allele frequency: 9.096035947534065e-6
allele num: 109938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+31C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+31C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+31C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+31C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+31C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+31C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+31C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+31C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+31C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7247
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

12-124915130-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915130
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915130
    reference: chr 12
allele count: 1
allele frequency: 9.096035947534065e-6
allele num: 109938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+31C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+31C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+31C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+31C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+31C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+31C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+31C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+31C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+31C>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12340
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

12-124915131-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915131
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915131
    reference: chr 12
allele count: 1
allele frequency: 9.092727636436378e-6
allele num: 109978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+30A>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+30A>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+30A>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+30A>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+30A>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+30A>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+30A>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+30A>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+30A>C
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

12-124915132-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915132
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915132
    reference: chr 12
allele count: 4
allele frequency: 3.638679159465114e-5
allele num: 109930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+29G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+29G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12340
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3189
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-124915133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915133
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915133
    reference: chr 12
allele count: 4
allele frequency: 3.628315373172236e-5
allele num: 110244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+28C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+28C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+28C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+28C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+28C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+28C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+28C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+28C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+28C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10744
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

12-124915133-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915133
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915133
    reference: chr 12
allele count: 3
allele frequency: 2.721236529879177e-5
allele num: 110244
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+28C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+28C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+28C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+28C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+28C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+28C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+28C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+28C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+28C>G
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4084
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

12-124915135-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915135
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915135
    reference: chr 12
allele count: 1
allele frequency: 9.024130525023914e-6
allele num: 110814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+26C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+26C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+26C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+26C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+26C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+26C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+26C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+26C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+26C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12332
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

12-124915136-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915136
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915136
    reference: chr 12
allele count: 75
allele frequency: 6.76089856849241e-4
allele num: 110932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+25C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 9288
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10853
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13280
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

12-124915143-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915143
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915143
    reference: chr 12
allele count: 1
allele frequency: 8.935272883233854e-6
allele num: 111916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+18C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4592
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

12-124915144-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915144
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915144
    reference: chr 12
allele count: 1
allele frequency: 8.923631561100105e-6
allele num: 112062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+17C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+17C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+17C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+17C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+17C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+17C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+17C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+17C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+17C>G
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-124915151-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915151
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915151
    reference: chr 12
allele count: 1
allele frequency: 8.834546611067921e-6
allele num: 113192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+10G>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/12-124915152-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915152
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915152
    reference: chr 12
allele count: 1
allele frequency: 8.806382866301495e-6
allele num: 113554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+9G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+9G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+9G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+9G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+9G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+9G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+9G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+9G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+9G>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

12-124915155-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915155
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915155
    reference: chr 12
allele count: 2
allele frequency: 1.751374829240954e-5
allele num: 114196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1055+6C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.27+6C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1055+6C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1055+6C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1055+6C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1055+6C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-236+6C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1055+6C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1055+6C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1055+6C>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

12-124915171-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915171
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915171
    reference: chr 12
allele count: 2
allele frequency: 1.70695070326369e-5
allele num: 117168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1045C>T
  hgvsp: ENSP00000402808.1:p.Arg349Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1045C>T
  hgvsp: ENSP00000384202.1:p.Arg349Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1045C>T
  hgvsp: ENSP00000405367.1:p.Arg349Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1045C>T
  hgvsp: ENSP00000380513.1:p.Arg349Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1045C>T
  hgvsp: ENSP00000348551.3:p.Arg349Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-246C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.813C>T
  hgvsp: ENSP00000443689.1:p.Arg272Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1045C>T
  hgvsp: ENSP00000400281.2:p.Arg349Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.17C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1045C>T
  hgvsp: ENSP00000384018.1:p.Arg349Cys
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7703
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg349Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

12-124915184-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915184
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915184
    reference: chr 12
allele count: 1
allele frequency: 8.395318770253707e-6
allele num: 119114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.4C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1032C>T
  hgvsp: ENST00000404621.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1032C>T
  hgvsp: ENST00000397355.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1032C>T
  hgvsp: ENST00000356219.3:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1032C>T
  hgvsp: ENST00000429285.2:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-259C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1032C>T
  hgvsp: ENST00000458234.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1032C>T
  hgvsp: ENST00000420698.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1032C>T
  hgvsp: ENST00000405201.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.800C>T
  hgvsp: ENST00000542927.1:c.800C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg344Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

12-124915185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915185
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915185
    reference: chr 12
allele count: 4
allele frequency: 3.355198040564344e-5
allele num: 119218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.799G>A
  hgvsp: ENSP00000443689.1:p.Arg267His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1031G>A
  hgvsp: ENSP00000402808.1:p.Arg344His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196498
  ensembl transcript: ENST00000494460
  gene symbol: NCOR2
  hgvsc: ENST00000494460.1:n.3G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1031G>A
  hgvsp: ENSP00000384018.1:p.Arg344His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1031G>A
  hgvsp: ENSP00000405367.1:p.Arg344His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1031G>A
  hgvsp: ENSP00000348551.3:p.Arg344His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1031G>A
  hgvsp: ENSP00000380513.1:p.Arg344His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1031G>A
  hgvsp: ENSP00000384202.1:p.Arg344His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1031G>A
  hgvsp: ENSP00000400281.2:p.Arg344His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-260G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12287
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Arg344His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP

12-124915190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915190
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915190
    reference: chr 12
allele count: 2
allele frequency: 1.669755714738934e-5
allele num: 119778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1026G>A
  hgvsp: ENST00000458234.1:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1026G>A
  hgvsp: ENST00000356219.3:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1026G>A
  hgvsp: ENST00000405201.1:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1026G>A
  hgvsp: ENST00000404621.1:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-265G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.794G>A
  hgvsp: ENST00000542927.1:c.794G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1026G>A
  hgvsp: ENST00000397355.1:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1026G>A
  hgvsp: ENST00000420698.1:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.732G>A
  hgvsp: ENST00000448008.1:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1026G>A
  hgvsp: ENST00000429285.2:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys342Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

12-124915205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915205
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915205
    reference: chr 12
allele count: 1
allele frequency: 8.308684236764266e-6
allele num: 120356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1011C>T
  hgvsp: ENST00000405201.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1011C>T
  hgvsp: ENST00000397355.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1011C>T
  hgvsp: ENST00000356219.3:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.779C>T
  hgvsp: ENST00000542927.1:c.779C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1011C>T
  hgvsp: ENST00000420698.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.717C>T
  hgvsp: ENST00000448008.1:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1011C>T
  hgvsp: ENST00000458234.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1011C>T
  hgvsp: ENST00000429285.2:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1011C>T
  hgvsp: ENST00000404621.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-280C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7942
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe337Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

12-124915214-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915214
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915214
    reference: chr 12
allele count: 1
allele frequency: 8.300270588821196e-6
allele num: 120478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-289G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.708G>A
  hgvsp: ENST00000448008.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1002G>A
  hgvsp: ENST00000420698.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.770G>A
  hgvsp: ENST00000542927.1:c.770G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1002G>A
  hgvsp: ENST00000458234.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1002G>A
  hgvsp: ENST00000404621.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1002G>A
  hgvsp: ENST00000397355.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1002G>A
  hgvsp: ENST00000429285.2:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1002G>A
  hgvsp: ENST00000405201.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1002G>A
  hgvsp: ENST00000356219.3:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu334Glu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-124915216-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915216
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915216
    reference: chr 12
allele count: 1
allele frequency: 8.298617450332775e-6
allele num: 120502
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.706G>C
  hgvsp: ENSP00000403034.1:p.Glu236Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.1000G>C
  hgvsp: ENSP00000384018.1:p.Glu334Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.1000G>C
  hgvsp: ENSP00000348551.3:p.Glu334Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.1000G>C
  hgvsp: ENSP00000400281.2:p.Glu334Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.1000G>C
  hgvsp: ENSP00000384202.1:p.Glu334Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.1000G>C
  hgvsp: ENSP00000380513.1:p.Glu334Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.1000G>C
  hgvsp: ENSP00000405367.1:p.Glu334Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.768G>C
  hgvsp: ENSP00000443689.1:p.Glu257Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-291G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.1000G>C
  hgvsp: ENSP00000402808.1:p.Glu334Gln
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu334Gln
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

12-124915228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915228
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915228
    reference: chr 12
allele count: 2
allele frequency: 1.658512314453935e-5
allele num: 120590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.988C>T
  hgvsp: ENSP00000400281.2:p.Arg330Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-303C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.988C>T
  hgvsp: ENSP00000402808.1:p.Arg330Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.988C>T
  hgvsp: ENSP00000384018.1:p.Arg330Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.988C>T
  hgvsp: ENSP00000384202.1:p.Arg330Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.988C>T
  hgvsp: ENSP00000380513.1:p.Arg330Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.756C>T
  hgvsp: ENSP00000443689.1:p.Arg253Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.694C>T
  hgvsp: ENSP00000403034.1:p.Arg232Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.988C>T
  hgvsp: ENSP00000405367.1:p.Arg330Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.988C>T
  hgvsp: ENSP00000348551.3:p.Arg330Cys
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3198
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg330Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

12-124915238-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915238
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915238
    reference: chr 12
allele count: 3
allele frequency: 2.48719096652241e-5
allele num: 120618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.978G>A
  hgvsp: ENST00000429285.2:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.978G>A
  hgvsp: ENST00000397355.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.978G>A
  hgvsp: ENST00000405201.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.746G>A
  hgvsp: ENST00000542927.1:c.746G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.978G>A
  hgvsp: ENST00000458234.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.684G>A
  hgvsp: ENST00000448008.1:c.684G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.978G>A
  hgvsp: ENST00000420698.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.978G>A
  hgvsp: ENST00000404621.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.978G>A
  hgvsp: ENST00000356219.3:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-313G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu326Glu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

12-124915245-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915245
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915245
    reference: chr 12
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.971C>T
  hgvsp: ENSP00000400281.2:p.Ala324Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.971C>T
  hgvsp: ENSP00000384202.1:p.Ala324Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.739C>T
  hgvsp: ENSP00000443689.1:p.Ala247Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.971C>T
  hgvsp: ENSP00000380513.1:p.Ala324Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.971C>T
  hgvsp: ENSP00000405367.1:p.Ala324Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-320C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.971C>T
  hgvsp: ENSP00000348551.3:p.Ala324Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.971C>T
  hgvsp: ENSP00000402808.1:p.Ala324Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.677C>T
  hgvsp: ENSP00000403034.1:p.Ala226Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.971C>T
  hgvsp: ENSP00000384018.1:p.Ala324Val
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala324Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

12-124915248-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915248
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915248
    reference: chr 12
allele count: 2
allele frequency: 1.65812731101494e-5
allele num: 120618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.968G>A
  hgvsp: ENSP00000405367.1:p.Arg323Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.736G>A
  hgvsp: ENSP00000443689.1:p.Arg246Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.968G>A
  hgvsp: ENSP00000380513.1:p.Arg323Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.968G>A
  hgvsp: ENSP00000384018.1:p.Arg323Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.968G>A
  hgvsp: ENSP00000348551.3:p.Arg323Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.968G>A
  hgvsp: ENSP00000402808.1:p.Arg323Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.968G>A
  hgvsp: ENSP00000384202.1:p.Arg323Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.968G>A
  hgvsp: ENSP00000400281.2:p.Arg323Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.674G>A
  hgvsp: ENSP00000403034.1:p.Arg225Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-323G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg323Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-124915250-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915250
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915250
    reference: chr 12
allele count: 2
allele frequency: 1.65812731101494e-5
allele num: 120618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.672G>T
  hgvsp: ENST00000448008.1:c.672G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.734G>T
  hgvsp: ENST00000542927.1:c.734G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.966G>T
  hgvsp: ENST00000397355.1:c.966G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.966G>T
  hgvsp: ENST00000404621.1:c.966G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.966G>T
  hgvsp: ENST00000420698.1:c.966G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.966G>T
  hgvsp: ENST00000356219.3:c.966G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.966G>T
  hgvsp: ENST00000429285.2:c.966G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.966G>T
  hgvsp: ENST00000405201.1:c.966G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.966G>T
  hgvsp: ENST00000458234.1:c.966G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-325G>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg322Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

12-124915252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915252
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915252
    reference: chr 12
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.732C>T
  hgvsp: ENSP00000443689.1:p.Arg245Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.964C>T
  hgvsp: ENSP00000348551.3:p.Arg322Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-327C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.964C>T
  hgvsp: ENSP00000405367.1:p.Arg322Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.964C>T
  hgvsp: ENSP00000402808.1:p.Arg322Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.964C>T
  hgvsp: ENSP00000400281.2:p.Arg322Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.964C>T
  hgvsp: ENSP00000384202.1:p.Arg322Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.964C>T
  hgvsp: ENSP00000384018.1:p.Arg322Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.964C>T
  hgvsp: ENSP00000380513.1:p.Arg322Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.670C>T
  hgvsp: ENSP00000403034.1:p.Arg224Trp
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg322Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

12-124915268-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915268
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915268
    reference: chr 12
allele count: 11
allele frequency: 9.122271611490745e-5
allele num: 120584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.716C>T
  hgvsp: ENST00000542927.1:c.716C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.948C>T
  hgvsp: ENST00000420698.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.948C>T
  hgvsp: ENST00000429285.2:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.948C>T
  hgvsp: ENST00000405201.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.948C>T
  hgvsp: ENST00000397355.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.948C>T
  hgvsp: ENST00000458234.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.948C>T
  hgvsp: ENST00000356219.3:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-343C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.654C>T
  hgvsp: ENST00000448008.1:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.948C>T
  hgvsp: ENST00000404621.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7933
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile316Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

12-124915273-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915273
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915273
    reference: chr 12
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.711C>A
  hgvsp: ENSP00000443689.1:p.Arg238Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.943C>A
  hgvsp: ENSP00000348551.3:p.Arg315Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.943C>A
  hgvsp: ENSP00000384018.1:p.Arg315Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.943C>A
  hgvsp: ENSP00000380513.1:p.Arg315Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-348C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.943C>A
  hgvsp: ENSP00000384202.1:p.Arg315Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.943C>A
  hgvsp: ENSP00000402808.1:p.Arg315Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.943C>A
  hgvsp: ENSP00000405367.1:p.Arg315Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.943C>A
  hgvsp: ENSP00000400281.2:p.Arg315Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.649C>A
  hgvsp: ENSP00000403034.1:p.Arg217Ser
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg315Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

12-124915282-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915282
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915282
    reference: chr 12
allele count: 6
allele frequency: 4.980079681274901e-5
allele num: 120480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.934A>C
  hgvsp: ENSP00000348551.3:p.Lys312Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.934A>C
  hgvsp: ENSP00000384018.1:p.Lys312Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.640A>C
  hgvsp: ENSP00000403034.1:p.Lys214Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-357A>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.934A>C
  hgvsp: ENSP00000405367.1:p.Lys312Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.702A>C
  hgvsp: ENSP00000443689.1:p.Lys235Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.934A>C
  hgvsp: ENSP00000380513.1:p.Lys312Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.934A>C
  hgvsp: ENSP00000384202.1:p.Lys312Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.934A>C
  hgvsp: ENSP00000402808.1:p.Lys312Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.934A>C
  hgvsp: ENSP00000400281.2:p.Lys312Gln
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys312Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

12-124915313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915313
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915313
    reference: chr 12
allele count: 1
allele frequency: 8.402937667008386e-6
allele num: 119006
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.903C>T
  hgvsp: ENST00000405201.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.671C>T
  hgvsp: ENST00000542927.1:c.671C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.903C>T
  hgvsp: ENST00000458234.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.903C>T
  hgvsp: ENST00000397355.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-388C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.903C>T
  hgvsp: ENST00000420698.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.903C>T
  hgvsp: ENST00000356219.3:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.609C>T
  hgvsp: ENST00000448008.1:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.903C>T
  hgvsp: ENST00000404621.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.903C>T
  hgvsp: ENST00000429285.2:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg301Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

12-124915315-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915315
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915315
    reference: chr 12
allele count: 1
allele frequency: 8.41864224137931e-6
allele num: 118784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-390C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.901C>A
  hgvsp: ENSP00000400281.2:p.Arg301Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.901C>A
  hgvsp: ENSP00000402808.1:p.Arg301Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.901C>A
  hgvsp: ENSP00000405367.1:p.Arg301Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.901C>A
  hgvsp: ENSP00000380513.1:p.Arg301Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.669C>A
  hgvsp: ENSP00000443689.1:p.Arg224Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.901C>A
  hgvsp: ENSP00000384018.1:p.Arg301Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.901C>A
  hgvsp: ENSP00000384202.1:p.Arg301Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.607C>A
  hgvsp: ENSP00000403034.1:p.Arg203Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.901C>A
  hgvsp: ENSP00000348551.3:p.Arg301Ser
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg301Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

12-124915325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915325
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915325
    reference: chr 12
allele count: 2
allele frequency: 1.697302985555952e-5
allele num: 117834
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.659G>A
  hgvsp: ENST00000542927.1:c.659G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.891G>A
  hgvsp: ENST00000397355.1:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.891G>A
  hgvsp: ENST00000458234.1:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.597G>A
  hgvsp: ENST00000448008.1:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.891G>A
  hgvsp: ENST00000356219.3:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.891G>A
  hgvsp: ENST00000405201.1:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.891G>A
  hgvsp: ENST00000429285.2:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.891G>A
  hgvsp: ENST00000420698.1:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.891G>A
  hgvsp: ENST00000404621.1:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-400G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12265
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Lys297Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

12-124915337-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915337
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915337
    reference: chr 12
allele count: 2
allele frequency: 1.7174753112924e-5
allele num: 116450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-4C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-4C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-4C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-4C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-4C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-4C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-4C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-4C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-4C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-4C>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11609
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9308
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
hgvs: c.883-4C>A
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

12-124915342-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915342
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915342
    reference: chr 12
allele count: 1
allele frequency: 8.612967684145249e-6
allele num: 116104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-9C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-9C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-9C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-9C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-9C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-9C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-9C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-9C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-9C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-9C>G
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-124915343-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915343
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915343
    reference: chr 12
allele count: 2
allele frequency: 1.725536210377375e-5
allele num: 115906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-10G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-10G>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4597
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

12-124915343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915343
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915343
    reference: chr 12
allele count: 12
allele frequency: 1.035321726226425e-4
allele num: 115906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-10G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-10G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-10G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-10G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-10G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-10G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-10G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-10G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-10G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-10G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11508
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4095
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

12-124915344-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915344
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915344
    reference: chr 12
allele count: 7
allele frequency: 6.042713350943527e-5
allele num: 115842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-11C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-11C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-11C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-11C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-11C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-11C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-11C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-11C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-11C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-11C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11499
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3040
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

12-124915348-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915348
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915348
    reference: chr 12
allele count: 1
allele frequency: 8.672274737663689e-6
allele num: 115310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-15C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-15C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-15C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-15C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-15C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-15C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-15C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-15C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-15C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-15C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

12-124915351-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915351
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915351
    reference: chr 12
allele count: 3
allele frequency: 2.604980723142649e-5
allele num: 115164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-18C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-18C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4574
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12240
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

12-124915357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915357
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915357
    reference: chr 12
allele count: 244
allele frequency: 2.133501215396184e-3
allele num: 114366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-24G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-24G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-24G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-24G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-24G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-24G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-24G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-24G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-24G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-24G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 11111
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13248
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4076
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4029
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12331
  bin: 9.75e1
  variant carriers: 241
num of homozygotes: 2
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

12-124915358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915358
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915358
    reference: chr 12
allele count: 5
allele frequency: 4.37009456884647e-5
allele num: 114414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-25C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13280
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

12-124915364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915364
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915364
    reference: chr 12
allele count: 1
allele frequency: 8.773622979873309e-6
allele num: 113978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-31A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-31A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-31A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-31A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-31A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-31A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-31A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-31A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-31A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-31A>G
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4191
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15934
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

12-124915365-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915365
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915365
    reference: chr 12
allele count: 1
allele frequency: 8.780556336049453e-6
allele num: 113888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-32C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-32C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-32C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-32C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-32C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-32C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-32C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-32C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-32C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-32C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7232
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/12-124915368-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915368
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915368
    reference: chr 12
allele count: 2
allele frequency: 1.76186616864583e-5
allele num: 113516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-35G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-35G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-35G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-35G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-35G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-35G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-35G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-35G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-35G>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-35G>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12966
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4098
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD

12-124915371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915371
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915371
    reference: chr 12
allele count: 3
allele frequency: 2.66132036974611e-5
allele num: 112726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-38C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-38C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12407
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

12-124915374-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915374
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915374
    reference: chr 12
allele count: 1
allele frequency: 8.898380494749955e-6
allele num: 112380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-41G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-41G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-41G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-41G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-41G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-41G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-41G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-41G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-41G>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-41G>C
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3564
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

12-124915379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915379
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915379
    reference: chr 12
allele count: 3
allele frequency: 2.698424120313737e-5
allele num: 111176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-46G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-46G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-46G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-46G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-46G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-46G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-46G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-46G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-46G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-46G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8349
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

12-124915384-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124915384
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124915384
    reference: chr 12
allele count: 4
allele frequency: 3.616636528028933e-5
allele num: 110600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.651-51C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.883-51C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-408-51C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.883-51C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.883-51C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.883-51C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.883-51C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.589-51C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.883-51C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.883-51C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9613
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5231
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

12-124922432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124922432
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124922432
    reference: chr 12
allele count: 1
allele frequency: 1.47920241405834e-5
allele num: 67604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.882+44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.882+44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.882+44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.882+44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.882+44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-409+44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.650+44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.588+44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.882+44G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.882+44G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17573
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

12-124922441-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124922441
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124922441
    reference: chr 12
allele count: 1
allele frequency: 1.442668359397542e-5
allele num: 69316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.882+35T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.882+35T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.650+35T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.588+35T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.882+35T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.882+35T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.882+35T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.882+35T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.882+35T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-409+35T>C
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16485
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5059
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7048
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

12-124922445-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124922445
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124922445
    reference: chr 12
allele count: 1
allele frequency: 1.418963021823651e-5
allele num: 70474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.882+31T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.882+31T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000405367
  ensembl transcript: ENST00000420698
  gene symbol: NCOR2
  hgvsc: ENST00000420698.1:c.882+31T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.882+31T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.882+31T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.-409+31T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.882+31T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000403034
  ensembl transcript: ENST00000448008
  gene symbol: NCOR2
  hgvsc: ENST00000448008.1:c.588+31T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.882+31T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000443689
  ensembl transcript: ENST00000542927
  gene symbol: NCOR2
  hgvsc: ENST00000542927.1:c.650+31T>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

GenotypeQuality
all individuals: 3580
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9095
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4966
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.002761270184285e-5
allele num: 66636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

FS
type: SiteQuality
SIO_000300: 1.101e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

DP
type: SiteQuality
SIO_000300: 1.625681e6

QD
type: SiteQuality
SIO_000300: 1.233e1

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

GenotypeQuality
all individuals: 1839
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 496
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2221
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4612
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.235850261913888e-4
allele num: 31308
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.173913043478261e-3
allele num: 460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4826
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.577e0

DP
type: SiteQuality
SIO_000300: 7.76131e5

FS
type: SiteQuality
SIO_000300: 6.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

QD
type: SiteQuality
SIO_000300: 9.17e0

GenotypeQuality
all individuals: 1748
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 503
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5236
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12039
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31265
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23962
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 6.43992e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.59e0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17771
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3985
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.067919692439129e-4
allele num: 18728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2422
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.4e-1

FS
type: SiteQuality
SIO_000300: 1.687e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

DP
type: SiteQuality
SIO_000300: 5.74647e5

MQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

QD
type: SiteQuality
SIO_000300: 9.98e0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23052
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 332
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2671
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3721
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3985
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.4e-1

QD
type: SiteQuality
SIO_000300: 9.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

DP
type: SiteQuality
SIO_000300: 5.74647e5

FS
type: SiteQuality
SIO_000300: 1.687e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 1284
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18571
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.351610095735422e-4
allele num: 2298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.123216893182073e-4
allele num: 17806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.444444444444445e-4
allele num: 2250
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.544e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.65e-2

DP
type: SiteQuality
SIO_000300: 5.63869e5

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

GenotypeQuality
all individuals: 14137
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20411
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2842
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.018528916339136e-5
allele num: 14248
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.09e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.184e0

VQSLOD
type: SiteQuality
SIO_000300: -9.772e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

FS
type: SiteQuality
SIO_000300: 3.245e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.191e5

QD
type: SiteQuality
SIO_000300: 1.504e1

GenotypeQuality
all individuals: 390
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14412
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4835
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14106
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.175640724194686e-4
allele num: 8506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -5.277e0

DP
type: SiteQuality
SIO_000300: 5.14973e5

MQ
type: SiteQuality
SIO_000300: 4.675e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.943e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.07e-2

GenotypeQuality
all individuals: 20594
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13621
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2738
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13696
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.426735218508997e-4
allele num: 1556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.17e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.792e-1

FS
type: SiteQuality
SIO_000300: 4.484e0

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

DP
type: SiteQuality
SIO_000300: 5.1103e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 8.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5489
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 20403
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2164
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 12940
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 387
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 757
bin: 9.75e1
variant carriers: 121

GenotypeQuality
all individuals: 975
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 458
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2639
bin: 6.25e1
variant carriers: 7

African
type: Population
allele count: 86
allele frequency: 3.159441587068332e-2
allele num: 2722
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 4.465614766299494e-4
allele num: 13436
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.99e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 5.07212e5

VQSLOD
type: SiteQuality
SIO_000300: 6.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5489
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 452
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 12940
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6944
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 757
bin: 9.75e1
variant carriers: 89

GenotypeQuality
all individuals: 358
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 458
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 387
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2639
bin: 6.25e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

African
type: Population
allele count: 68
allele frequency: 2.498163115356355e-2
allele num: 2722
num of homozygotes: 1

Latino
type: Population
allele count: 2
allele frequency: 1.470588235294118e-3
allele num: 1360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.569728700618753e-4
allele num: 8404
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.485e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.07212e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.99e-2

GenotypeQuality
all individuals: 325
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7191
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20393
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 12231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2396
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1250
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 5.02481e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.33e-2

QD
type: SiteQuality
SIO_000300: 1.303e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 333
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6888
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.25e1
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GenotypeQuality
all individuals: 893
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7494
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 1

South Asian
type: Population
allele count: 2
allele frequency: 2.421893921046258e-4
allele num: 8258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.48e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.117e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.97859e5

GenotypeQuality
all individuals: 625
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7140
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.204614645088928e-5
allele num: 62410
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.942074e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.504e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

FS
type: SiteQuality
SIO_000300: 2.034e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7140
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.5e0
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GenotypeQuality
all individuals: 14385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12384
bin: 9.75e1
variant carriers: 44

GenotypeQuality
all individuals: 2057
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.613843935266785e-5
allele num: 62410
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.277044854881266e-4
allele num: 11370
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.86046511627907e-4
allele num: 10750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 3.265765765765766e-3
allele num: 8880
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.282051282051282e-3
allele num: 780
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 2.034e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.942074e6

QD
type: SiteQuality
SIO_000300: 1.504e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

GenotypeQuality
all individuals: 180
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4557
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12344
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2059
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variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
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variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.598925522049183e-5
allele num: 62542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

FS
type: SiteQuality
SIO_000300: 5.258e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 1.579e1

DP
type: SiteQuality
SIO_000300: 1.943623e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

GenotypeQuality
all individuals: 351
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12345
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
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GenotypeQuality
all individuals: 1140
bin: 7.5e0
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GenotypeQuality
all individuals: 3188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
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variant carriers: 0

GenotypeQuality
all individuals: 15296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4079
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3831
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.134088417975886e-5
allele num: 10948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.191625175539385e-5
allele num: 62664
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

QD
type: SiteQuality
SIO_000300: 1.188e1

DP
type: SiteQuality
SIO_000300: 1.95049e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.192e0

GenotypeQuality
all individuals: 3875
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 12344
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2067
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15378
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4079
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4551
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.466279589102278e-4
allele num: 8956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.594489444479878e-5
allele num: 62716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.586e0

FS
type: SiteQuality
SIO_000300: 8.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.953763e6

QD
type: SiteQuality
SIO_000300: 1.324e1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4080
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593422352528761e-5
allele num: 62758
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 1.797e0

QD
type: SiteQuality
SIO_000300: 1.322e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.956163e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.85e0

GenotypeQuality
all individuals: 1017
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2068
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.112842198976185e-4
allele num: 8986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.01e-1

FS
type: SiteQuality
SIO_000300: 1.797e0

DP
type: SiteQuality
SIO_000300: 1.956163e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.322e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 258
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7241
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.11358574610245e-4
allele num: 8980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62768
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

FS
type: SiteQuality
SIO_000300: 1.174e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.933e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.06e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: -1.02e0

DP
type: SiteQuality
SIO_000300: 1.956636e6

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e0

GenotypeQuality
all individuals: 4013
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3010
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variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.374705169885892e-5
allele num: 62748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.035e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.459e0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

FS
type: SiteQuality
SIO_000300: 6.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.9593e6

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

GenotypeQuality
all individuals: 7276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 851
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GenotypeQuality
all individuals: 3016
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.180560414745078e-5
allele num: 62882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.256281407035176e-3
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.520681265206813e-4
allele num: 6576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.612e0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 1.963752e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.193317422434368e-4
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.180560414745078e-5
allele num: 62882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.612e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

QD
type: SiteQuality
SIO_000300: 1.351e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

DP
type: SiteQuality
SIO_000300: 1.963752e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 122
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 2067
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.756567425569177e-5
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

DP
type: SiteQuality
SIO_000300: 1.968378e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.764e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 2.407e0

VQSLOD
type: SiteQuality
SIO_000300: -9.7e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.235e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.747e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 74

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 362
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 16430
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7347
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.423780294880719e-4
allele num: 63212
num of homozygotes: 0

African
type: Population
allele count: 62
allele frequency: 6.813186813186814e-3
allele num: 9100
num of homozygotes: 1

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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allele count: 3
allele frequency: 2.632502632502633e-4
allele num: 11396
num of homozygotes: 0

South Asian
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allele frequency: 8.735150244584206e-5
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BaseQRankSum
type: SiteQuality
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MQ
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ReadPosRankSum
type: SiteQuality
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 8.800000000000001e-3

FS
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63610
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.08837614279495e-4
allele num: 9188
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
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FS
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11408
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.570598397989634e-5
allele num: 63670
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.55860349127182e-5
allele num: 64160
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.028e0

MQRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.181e1

DP
type: SiteQuality
SIO_000300: 1.994681e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.204e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 6.32e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.556807921038702e-5
allele num: 64234
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12658
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.253e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.102506825515016e-5
allele num: 64464
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.526904049349539e-5
allele num: 65492
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African
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Other
type: Population
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East Asian
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South Asian
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European (Finnish)
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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QD
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.512721991952319e-5
allele num: 66106
num of homozygotes: 0

East Asian
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European (Finnish)
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African
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Latino
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South Asian
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Other
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InbreedingCoeff
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FS
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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European (Non-Finnish)
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allele frequency: 4.5355587808418e-5
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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African
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South Asian
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QD
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VQSLOD
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SIO_000300: 2.85e0

FS
type: SiteQuality
SIO_000300: 5.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.464e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

DP
type: SiteQuality
SIO_000300: 2.05643e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7871
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22158
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729505361466621e-4
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.207e1

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 3.14e0

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.062494e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.418e0

DP
type: SiteQuality
SIO_000300: 2.06943e6

MQRankSum
type: SiteQuality
SIO_000300: -1.136e0

FS
type: SiteQuality
SIO_000300: 4.253e0

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.48e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

DP
type: SiteQuality
SIO_000300: 2.071087e6

VQSLOD
type: SiteQuality
SIO_000300: -8.8e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.16e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.425e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4121
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

FS
type: SiteQuality
SIO_000300: 1.901e0

VQSLOD
type: SiteQuality
SIO_000300: 4.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

QD
type: SiteQuality
SIO_000300: 1.575e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.509e0

DP
type: SiteQuality
SIO_000300: 2.071374e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000930288389401e-5
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.072597e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.076e0

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 2.072906e6

BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
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SIO_000300: 4.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

ClippingRankSum
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MQ
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SIO_000300: 5.819e1

InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

South Asian
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ClippingRankSum
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VQSLOD
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FS
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DP
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MQ
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InbreedingCoeff
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QD
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MQRankSum
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SIO_000300: 6.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.2e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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Other
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African
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allele frequency: 0.0e0
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East Asian
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InbreedingCoeff
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VQSLOD
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MQ
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BaseQRankSum
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DP
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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European (Non-Finnish)
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DP
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VQSLOD
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.200480192076831e-4
allele num: 66640
num of homozygotes: 0

Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele num: 11572
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African
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South Asian
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QD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: 2.0e-3

FS
type: SiteQuality
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MQRankSum
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66634
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Latino
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Other
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South Asian
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QD
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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Other
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South Asian
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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FS
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MQRankSum
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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East Asian
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Latino
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European (Non-Finnish)
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Other
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African
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ReadPosRankSum
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BaseQRankSum
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QD
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MQRankSum
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 66144
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Other
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MQRankSum
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
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allele frequency: 2.052966536645453e-4
allele num: 9742
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65892
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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FS
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SIO_000300: 5.09e-1

BaseQRankSum
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QD
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MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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SIO_000300: 5.986e1

VQSLOD
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ReadPosRankSum
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SIO_000300: 2.81e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.527230520174715e-5
allele num: 65478
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 13674
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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VQSLOD
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.529285823520416e-5
allele num: 65390
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

FS
type: SiteQuality
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QD
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DP
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ReadPosRankSum
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MQ
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 3.029385034837928e-4
allele num: 6602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 2.525e0

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

InbreedingCoeff
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QD
type: SiteQuality
SIO_000300: 1.338e1

DP
type: SiteQuality
SIO_000300: 2.002201e6

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
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allele count: 5
allele frequency: 5.146150679291889e-4
allele num: 9716
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.120512898980935e-5
allele num: 65354
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 2.329916123019571e-4
allele num: 8584
num of homozygotes: 0

Other
type: Population
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Latino
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allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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QD
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.124073733847755e-5
allele num: 65316
num of homozygotes: 0

South Asian
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allele num: 13254
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Other
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African
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East Asian
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Latino
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num of homozygotes: 0

European (Finnish)
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allele num: 6602
num of homozygotes: 0

FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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QD
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DP
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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African
type: Population
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East Asian
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
type: Population
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Other
type: Population
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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QD
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DP
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GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 2991
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GenotypeQuality
all individuals: 102
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7330
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 158
allele frequency: 2.436466814705157e-3
allele num: 64848
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 56
allele frequency: 4.522694233564852e-3
allele num: 12382
num of homozygotes: 2

Other
type: Population
allele count: 1
allele frequency: 1.190476190476191e-3
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 7.255389718076285e-4
allele num: 9648
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 1.827676240208877e-3
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.980974e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 3000
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168224299065421e-4
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.083469519903795e-5
allele num: 64862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.612123166209898e-4
allele num: 12406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.22e-1

DP
type: SiteQuality
SIO_000300: 1.974714e6

FS
type: SiteQuality
SIO_000300: 4.255e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.23e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.4e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 222
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16795141322121e-4
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12182
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.961429e6

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.032e0

QD
type: SiteQuality
SIO_000300: 1.237e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.735e0

GenotypeQuality
all individuals: 861
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3184
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GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546742560168286e-5
allele num: 64652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 6.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.535e0

DP
type: SiteQuality
SIO_000300: 1.958641e6

GenotypeQuality
all individuals: 1241
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4071
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7140
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variant carriers: 0

GenotypeQuality
all individuals: 4509
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.099621846134772e-5
allele num: 64524
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.197e0

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

DP
type: SiteQuality
SIO_000300: 1.948543e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.582e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.242e1

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
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variant carriers: 0

GenotypeQuality
all individuals: 3621
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GenotypeQuality
all individuals: 2865
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variant carriers: 1

GenotypeQuality
all individuals: 164
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GenotypeQuality
all individuals: 1094
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12107
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GenotypeQuality
all individuals: 2049
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.603714632876237e-4
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.9e0

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.551e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

VQSLOD
type: SiteQuality
SIO_000300: -1.412e0

DP
type: SiteQuality
SIO_000300: 1.923386e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.109e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1409
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GenotypeQuality
all individuals: 4034
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.735150244584206e-5
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.057e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.597e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.912922e6

QD
type: SiteQuality
SIO_000300: 1.519e1

GenotypeQuality
all individuals: 5707
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variant carriers: 0

GenotypeQuality
all individuals: 4012
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.709871891484552e-5
allele num: 63696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.75e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.236e1

GenotypeQuality
all individuals: 1084
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
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variant carriers: 0

GenotypeQuality
all individuals: 897
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GenotypeQuality
all individuals: 3972
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GenotypeQuality
all individuals: 1829
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variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12093
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8826
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.782715615668365e-5
allele num: 11386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.733503739467954e-5
allele num: 63378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10550
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.379e1

MQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

FS
type: SiteQuality
SIO_000300: 2.296e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.818e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.865241e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4982
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7411
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.799552071668533e-5
allele num: 35720
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.4e-1

DP
type: SiteQuality
SIO_000300: 9.58696e5

FS
type: SiteQuality
SIO_000300: 4.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1223
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.663003663003663e-4
allele num: 2730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.799e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

DP
type: SiteQuality
SIO_000300: 9.96411e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -1.031e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.181e0

QD
type: SiteQuality
SIO_000300: 5.79e0

GenotypeQuality
all individuals: 789
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21666
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4834
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 948
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.676516246453616e-5
allele num: 37362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.65e0

FS
type: SiteQuality
SIO_000300: 6.536e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.809e0

MQRankSum
type: SiteQuality
SIO_000300: -1.35e0