15-89436389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89436389
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89436389
    reference: chr 15
allele count: 1
allele frequency: 9.002520705797624e-5
allele num: 11108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140511
  ensembl protein: ENSP00000456458
  ensembl transcript: ENST00000558770
  gene symbol: HAPLN3
  hgvsc: ENST00000558770.1:c.-48+2301C>T
  variant of: http://identifiers.org/hgnc/21446
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140511
  ensembl protein: ENSP00000352606
  ensembl transcript: ENST00000359595
  gene symbol: HAPLN3
  hgvsc: ENST00000359595.3:c.-48+2301C>T
  variant of: http://identifiers.org/hgnc/21446
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140511
  ensembl transcript: ENST00000563808
  gene symbol: HAPLN3
  hgvsc: ENST00000563808.1:n.55+2301C>T
  variant of: http://identifiers.org/hgnc/21446
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140511
  ensembl protein: ENSP00000456985
  ensembl transcript: ENST00000562281
  gene symbol: HAPLN3
  hgvsc: ENST00000562281.1:c.-48+2301C>T
  variant of: http://identifiers.org/hgnc/21446
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140511
  ensembl protein: ENSP00000457180
  ensembl transcript: ENST00000562889
  gene symbol: HAPLN3
  hgvsc: ENST00000562889.1:c.1-46C>T
  variant of: http://identifiers.org/hgnc/21446
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

15-89442575-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442575
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442575
    reference: chr 15
allele count: 1
allele frequency: 8.311170212765958e-6
allele num: 120320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*51C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*51C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.755C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*51C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1190C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*51C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*20+31C>G
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2807
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38319
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

15-89442578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442578
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442578
    reference: chr 15
allele count: 92
allele frequency: 7.645132875733351e-4
allele num: 120338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*20+28C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1187C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*48C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*48C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.752C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*48C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*48C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

15-89442583-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442583
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442583
    reference: chr 15
allele count: 788
allele frequency: 6.545937863432463e-3
allele num: 120380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1182C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*43C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*43C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*20+23C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.747C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 2.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 7379
  bin: 4.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 2.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 3.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 4.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 6.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 5.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 3.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 6.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 7.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2729
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 28
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

15-89442583-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442583
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442583
    reference: chr 15
allele count: 11
allele frequency: 9.137730520019937e-5
allele num: 120380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*43C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*43C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*43C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.747C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1182C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*43C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*20+23C>G
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3932
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

15-89442590-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442590
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442590
    reference: chr 15
allele count: 1
allele frequency: 8.292148993333113e-6
allele num: 120596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*36A>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*36A>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*36A>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1175A>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*36A>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.740A>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*20+16A>G
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4693
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

15-89442591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442591
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442591
    reference: chr 15
allele count: 3
allele frequency: 2.487397187582913e-5
allele num: 120608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1174C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.739C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*35C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*20+15C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*35C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4678
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

15-89442592-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442592
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442591
    reference: chr 15
allele count: 10
allele frequency: 8.289811821271657e-5
allele num: 120630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*33delT
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*20+13delT
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1172delT
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*33delT
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*33delT
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*33delT
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.737delT
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7417
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7764
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GA
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

15-89442600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442600
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442600
    reference: chr 15
allele count: 1
allele frequency: 8.273214640280627e-6
allele num: 120872
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*26C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*26C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*26C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1165C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*20+6C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.730C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*26C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38619
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4989
  bin: 6.25e1
  variant carriers: 0
hgvs: c.*20+6C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

15-89442606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442606
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442606
    reference: chr 15
allele count: 12338
allele frequency: 1.019804271639225e-1
allele num: 120984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1159G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*20G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*20G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.724G>A
  variant of: http://identifiers.org/hgnc/7036
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 5.25e1
  variant carriers: 799
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 3.25e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 2.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 6.25e1
  variant carriers: 1000
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 9.75e1
  variant carriers: 2311
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 4.25e1
  variant carriers: 472
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 4.75e1
  variant carriers: 628
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 8.25e1
  variant carriers: 758
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 2.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 6.75e1
  variant carriers: 969
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 5.75e1
  variant carriers: 902
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 3.75e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 7.75e1
  variant carriers: 806
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 7.25e1
  variant carriers: 940
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 9.25e1
  variant carriers: 532
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 8.75e1
  variant carriers: 619
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 2
hgvs: c.*20G>A
num of homozygotes: 863
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

15-89442608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442608
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442608
    reference: chr 15
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.722C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*18C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1157C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*18C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 8.25e1
  variant carriers: 0
hgvs: c.*18C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

15-89442609-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442609
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442609
    reference: chr 15
allele count: 4
allele frequency: 3.30376463980706e-5
allele num: 121074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*17C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*17C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*17C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.721C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1156C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*17C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*17C>G
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

15-89442611-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442611
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442611
    reference: chr 15
allele count: 3
allele frequency: 2.477209671026556e-5
allele num: 121104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*15C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1154C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*15C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*15C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*15C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*15C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.719C>A
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

15-89442612-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442612
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442612
    reference: chr 15
allele count: 2
allele frequency: 1.651309488424321e-5
allele num: 121116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*14C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*14C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*14C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1153C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*14C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.718C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*14C>A
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41796
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

15-89442614-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442614
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442614
    reference: chr 15
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*12C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*12C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*12C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*12C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*12C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1151C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.716C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

15-89442620-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442620
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442620
    reference: chr 15
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.710A>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*6A>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*6A>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*6A>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*6A>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*6A>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1145A>C
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2550
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4318
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41779
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

15-89442624-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442624
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442624
    reference: chr 15
allele count: 2
allele frequency: 1.649620587264929e-5
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1141G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.706G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.*2G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.*2G>A
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4364
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/15-89442629-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442629
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442629
    reference: chr 15
allele count: 3
allele frequency: 2.473614775725594e-5
allele num: 121280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1137T>G
  hgvsp: ENSP00000442386.1:p.Cys379Trp
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.1029T>G
  hgvsp: ENSP00000444332.1:p.Cys343Trp
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1136T>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1161T>G
  hgvsp: ENSP00000456281.1:p.Cys387Trp
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1161T>G
  hgvsp: ENSP00000268150.8:p.Cys387Trp
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.701T>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.1005T>G
  hgvsp: ENSP00000268151.7:p.Cys335Trp
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Cys387Trp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

15-89442630-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442630
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442630
    reference: chr 15
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1160G>A
  hgvsp: ENSP00000268150.8:p.Cys387Tyr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.1004G>A
  hgvsp: ENSP00000268151.7:p.Cys335Tyr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1160G>A
  hgvsp: ENSP00000456281.1:p.Cys387Tyr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.700G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1135G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1136G>A
  hgvsp: ENSP00000442386.1:p.Cys379Tyr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.1028G>A
  hgvsp: ENSP00000444332.1:p.Cys343Tyr
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys387Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-89442635-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442635
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442635
    reference: chr 15
allele count: 9
allele frequency: 7.419376112906417e-5
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1131G>A
  hgvsp: ENST00000539437.1:c.1131G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1155G>A
  hgvsp: ENST00000566497.1:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.999G>A
  hgvsp: ENST00000268151.7:c.999G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1155G>A
  hgvsp: ENST00000268150.8:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.695G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1130G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.1023G>A
  hgvsp: ENST00000542878.1:c.1023G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu385Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

15-89442638-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442638
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442638
    reference: chr 15
allele count: 2
allele frequency: 1.648505629646725e-5
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1128G>A
  hgvsp: ENST00000539437.1:c.1128G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1152G>A
  hgvsp: ENST00000566497.1:c.1152G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1152G>A
  hgvsp: ENST00000268150.8:c.1152G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.996G>A
  hgvsp: ENST00000268151.7:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.692G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1127G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.1020G>A
  hgvsp: ENST00000542878.1:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41834
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu384Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

15-89442641-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442641
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442641
    reference: chr 15
allele count: 6
allele frequency: 4.944620253164557e-5
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1149G>A
  hgvsp: ENST00000268150.8:c.1149G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1149G>A
  hgvsp: ENST00000566497.1:c.1149G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1124G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1125G>A
  hgvsp: ENST00000539437.1:c.1125G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.993G>A
  hgvsp: ENST00000268151.7:c.993G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.689G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.1017G>A
  hgvsp: ENST00000542878.1:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6684
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu383Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

15-89442648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442648
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442648
    reference: chr 15
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1118G>A
  hgvsp: ENSP00000442386.1:p.Arg373His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1142G>A
  hgvsp: ENSP00000456281.1:p.Arg381His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.682G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.1010G>A
  hgvsp: ENSP00000444332.1:p.Arg337His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1117G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1142G>A
  hgvsp: ENSP00000268150.8:p.Arg381His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.986G>A
  hgvsp: ENSP00000268151.7:p.Arg329His
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4425
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg381His
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

15-89442655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442655
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442655
    reference: chr 15
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.979G>A
  hgvsp: ENSP00000268151.7:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.675G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1110G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1135G>A
  hgvsp: ENSP00000268150.8:p.Ala379Thr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.1003G>A
  hgvsp: ENSP00000444332.1:p.Ala335Thr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1135G>A
  hgvsp: ENSP00000456281.1:p.Ala379Thr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1111G>A
  hgvsp: ENSP00000442386.1:p.Ala371Thr
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4438
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala379Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-89442656-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442656
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442656
    reference: chr 15
allele count: 8
allele frequency: 6.590220113351786e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1134C>T
  hgvsp: ENST00000268150.8:c.1134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.1002C>T
  hgvsp: ENST00000542878.1:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1110C>T
  hgvsp: ENST00000539437.1:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.674C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1134C>T
  hgvsp: ENST00000566497.1:c.1134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1109C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.978C>T
  hgvsp: ENST00000268151.7:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile378Ile
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

15-89442658-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442658
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442658
    reference: chr 15
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1107A>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1132A>G
  hgvsp: ENSP00000456281.1:p.Ile378Val
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.1000A>G
  hgvsp: ENSP00000444332.1:p.Ile334Val
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.976A>G
  hgvsp: ENSP00000268151.7:p.Ile326Val
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.672A>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1132A>G
  hgvsp: ENSP00000268150.8:p.Ile378Val
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1108A>G
  hgvsp: ENSP00000442386.1:p.Ile370Val
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41849
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile378Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

15-89442660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442660
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442660
    reference: chr 15
allele count: 10
allele frequency: 8.237367996177861e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1106G>A
  hgvsp: ENSP00000442386.1:p.Arg369His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.670G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1105G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1130G>A
  hgvsp: ENSP00000456281.1:p.Arg377His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1130G>A
  hgvsp: ENSP00000268150.8:p.Arg377His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.998G>A
  hgvsp: ENSP00000444332.1:p.Arg333His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.974G>A
  hgvsp: ENSP00000268151.7:p.Arg325His
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg377His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

15-89442661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442661
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442661
    reference: chr 15
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1104C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.997C>T
  hgvsp: ENSP00000444332.1:p.Arg333Cys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.973C>T
  hgvsp: ENSP00000268151.7:p.Arg325Cys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1129C>T
  hgvsp: ENSP00000268150.8:p.Arg377Cys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1105C>T
  hgvsp: ENSP00000442386.1:p.Arg369Cys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1129C>T
  hgvsp: ENSP00000456281.1:p.Arg377Cys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.669C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg377Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

15-89442687-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442687
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442687
    reference: chr 15
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1103G>A
  hgvsp: ENSP00000456281.1:p.Arg368His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.971G>A
  hgvsp: ENSP00000444332.1:p.Arg324His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.643G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1079G>A
  hgvsp: ENSP00000442386.1:p.Arg360His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.947G>A
  hgvsp: ENSP00000268151.7:p.Arg316His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1103G>A
  hgvsp: ENSP00000268150.8:p.Arg368His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1078G>A
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg368His
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

15-89442689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442689
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442689
    reference: chr 15
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1076G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1101G>A
  hgvsp: ENST00000566497.1:c.1101G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.641G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1101G>A
  hgvsp: ENST00000268150.8:c.1101G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.969G>A
  hgvsp: ENST00000542878.1:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1077G>A
  hgvsp: ENST00000539437.1:c.1077G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.945G>A
  hgvsp: ENST00000268151.7:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41855
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val367Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-89442692-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442692
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442692
    reference: chr 15
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1098T>C
  hgvsp: ENST00000268150.8:c.1098T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.942T>C
  hgvsp: ENST00000268151.7:c.942T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.638T>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.966T>C
  hgvsp: ENST00000542878.1:c.966T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1098T>C
  hgvsp: ENST00000566497.1:c.1098T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1073T>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1074T>C
  hgvsp: ENST00000539437.1:c.1074T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr366Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

15-89442695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442695
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442695
    reference: chr 15
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.635C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1095C>T
  hgvsp: ENST00000566497.1:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1095C>T
  hgvsp: ENST00000268150.8:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.963C>T
  hgvsp: ENST00000542878.1:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1070C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1071C>T
  hgvsp: ENST00000539437.1:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.939C>T
  hgvsp: ENST00000268151.7:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg365Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/15-89442696-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442696
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442696
    reference: chr 15
allele count: 5
allele frequency: 4.11834475487612e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.938G>T
  hgvsp: ENSP00000268151.7:p.Arg313Leu
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1069G>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1094G>T
  hgvsp: ENSP00000268150.8:p.Arg365Leu
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.962G>T
  hgvsp: ENSP00000444332.1:p.Arg321Leu
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.634G>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1094G>T
  hgvsp: ENSP00000456281.1:p.Arg365Leu
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1070G>T
  hgvsp: ENSP00000442386.1:p.Arg357Leu
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41858
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg365Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-89442696-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442696
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442696
    reference: chr 15
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1094G>A
  hgvsp: ENSP00000456281.1:p.Arg365His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1094G>A
  hgvsp: ENSP00000268150.8:p.Arg365His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.938G>A
  hgvsp: ENSP00000268151.7:p.Arg313His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1069G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.634G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1070G>A
  hgvsp: ENSP00000442386.1:p.Arg357His
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.962G>A
  hgvsp: ENSP00000444332.1:p.Arg321His
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41858
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg365His
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

15-89442697-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442697
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442697
    reference: chr 15
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1069C>T
  hgvsp: ENSP00000442386.1:p.Arg357Cys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.633C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1093C>T
  hgvsp: ENSP00000456281.1:p.Arg365Cys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.937C>T
  hgvsp: ENSP00000268151.7:p.Arg313Cys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.961C>T
  hgvsp: ENSP00000444332.1:p.Arg321Cys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1093C>T
  hgvsp: ENSP00000268150.8:p.Arg365Cys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1068C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg365Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

15-89442698-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442698
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442698
    reference: chr 15
allele count: 6
allele frequency: 4.942013705851344e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1092T>C
  hgvsp: ENST00000566497.1:c.1092T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.632T>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1092T>C
  hgvsp: ENST00000268150.8:c.1092T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1068T>C
  hgvsp: ENST00000539437.1:c.1068T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.960T>C
  hgvsp: ENST00000542878.1:c.960T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1067T>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.936T>C
  hgvsp: ENST00000268151.7:c.936T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala364Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

15-89442708-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442708
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442708
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.950C>T
  hgvsp: ENSP00000444332.1:p.Pro317Leu
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1057C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.622C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.926C>T
  hgvsp: ENSP00000268151.7:p.Pro309Leu
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1058C>T
  hgvsp: ENSP00000442386.1:p.Pro353Leu
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1082C>T
  hgvsp: ENSP00000268150.8:p.Pro361Leu
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1082C>T
  hgvsp: ENSP00000456281.1:p.Pro361Leu
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4447
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro361Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

15-89442710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442710
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442710
    reference: chr 15
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1055G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.948G>A
  hgvsp: ENST00000542878.1:c.948G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1080G>A
  hgvsp: ENST00000268150.8:c.1080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.924G>A
  hgvsp: ENST00000268151.7:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1056G>A
  hgvsp: ENST00000539437.1:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1080G>A
  hgvsp: ENST00000566497.1:c.1080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.620G>A
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr360Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

15-89442711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442711
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442711
    reference: chr 15
allele count: 8
allele frequency: 6.589351607801793e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1054C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1079C>T
  hgvsp: ENSP00000456281.1:p.Thr360Met
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.619C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.923C>T
  hgvsp: ENSP00000268151.7:p.Thr308Met
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1079C>T
  hgvsp: ENSP00000268150.8:p.Thr360Met
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.947C>T
  hgvsp: ENSP00000444332.1:p.Thr316Met
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1055C>T
  hgvsp: ENSP00000442386.1:p.Thr352Met
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr360Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

15-89442716-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442716
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442716
    reference: chr 15
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.614T>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1074T>C
  hgvsp: ENST00000566497.1:c.1074T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1050T>C
  hgvsp: ENST00000539437.1:c.1050T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.942T>C
  hgvsp: ENST00000542878.1:c.942T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.918T>C
  hgvsp: ENST00000268151.7:c.918T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1074T>C
  hgvsp: ENST00000268150.8:c.1074T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1049T>C
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6867
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41863
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe358Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

15-89442722-GTTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442722
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442719
    reference: chr 15
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.933_935delGAA
  hgvsp: ENSP00000444332.1:p.Lys311del
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.909_911delGAA
  hgvsp: ENSP00000268151.7:p.Lys303del
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1065_1067delGAA
  hgvsp: ENSP00000268150.8:p.Lys355del
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1040_*1042delGAA
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1065_1067delGAA
  hgvsp: ENSP00000456281.1:p.Lys355del
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1041_1043delGAA
  hgvsp: ENSP00000442386.1:p.Lys347del
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.605_607delGAA
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys355del
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: GTTC
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

15-89442723-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442723
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442723
    reference: chr 15
allele count: 44
allele frequency: 3.624262792000264e-4
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1067A>T
  hgvsp: ENSP00000268150.8:p.Asn356Ile
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1043A>T
  hgvsp: ENSP00000442386.1:p.Asn348Ile
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.607A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.935A>T
  hgvsp: ENSP00000444332.1:p.Asn312Ile
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.911A>T
  hgvsp: ENSP00000268151.7:p.Asn304Ile
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1067A>T
  hgvsp: ENSP00000456281.1:p.Asn356Ile
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1042A>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41884
  bin: 9.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn356Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/15-89442728-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442728
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442728
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.930G>T
  hgvsp: ENSP00000444332.1:p.Lys310Asn
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1062G>T
  hgvsp: ENSP00000268150.8:p.Lys354Asn
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1038G>T
  hgvsp: ENSP00000442386.1:p.Lys346Asn
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1062G>T
  hgvsp: ENSP00000456281.1:p.Lys354Asn
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.906G>T
  hgvsp: ENSP00000268151.7:p.Lys302Asn
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1037G>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.602G>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41886
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys354Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

15-89442732-TGGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442732
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442729
    reference: chr 15
allele count: 22
allele frequency: 1.812041841693435e-4
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1055_1057delCCC
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.923_925delCCC
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.595_597delCCC
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.899_901delCCC
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1031_1033delCCC
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1055_1057delCCC
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1030_*1032delCCC
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41890
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser352_His353delinsTyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: TGGG
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

15-89442733-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442733
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442733
    reference: chr 15
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1057C>T
  hgvsp: ENSP00000456281.1:p.His353Tyr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.901C>T
  hgvsp: ENSP00000268151.7:p.His301Tyr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1032C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.925C>T
  hgvsp: ENSP00000444332.1:p.His309Tyr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.597C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1033C>T
  hgvsp: ENSP00000442386.1:p.His345Tyr
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1057C>T
  hgvsp: ENSP00000268150.8:p.His353Tyr
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His353Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

15-89442739-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442739
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442739
    reference: chr 15
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.919C>A
  hgvsp: ENSP00000444332.1:p.His307Asn
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1051C>A
  hgvsp: ENSP00000268150.8:p.His351Asn
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1026C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.895C>A
  hgvsp: ENSP00000268151.7:p.His299Asn
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1051C>A
  hgvsp: ENSP00000456281.1:p.His351Asn
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.591C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1027C>A
  hgvsp: ENSP00000442386.1:p.His343Asn
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His351Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

15-89442740-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442740
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442740
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.590C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1025C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.918C>G
  hgvsp: ENSP00000444332.1:p.Asn306Lys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1050C>G
  hgvsp: ENSP00000456281.1:p.Asn350Lys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1026C>G
  hgvsp: ENSP00000442386.1:p.Asn342Lys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.894C>G
  hgvsp: ENSP00000268151.7:p.Asn298Lys
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1050C>G
  hgvsp: ENSP00000268150.8:p.Asn350Lys
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn350Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

15-89442741-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442741
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442741
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1049A>G
  hgvsp: ENSP00000268150.8:p.Asn350Ser
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1025A>G
  hgvsp: ENSP00000442386.1:p.Asn342Ser
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1049A>G
  hgvsp: ENSP00000456281.1:p.Asn350Ser
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.893A>G
  hgvsp: ENSP00000268151.7:p.Asn298Ser
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1024A>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.917A>G
  hgvsp: ENSP00000444332.1:p.Asn306Ser
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.589A>G
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn350Ser
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

15-89442749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442749
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442749
    reference: chr 15
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1041C>T
  hgvsp: ENST00000566497.1:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1041C>T
  hgvsp: ENST00000268150.8:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.909C>T
  hgvsp: ENST00000542878.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.885C>T
  hgvsp: ENST00000268151.7:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1017C>T
  hgvsp: ENST00000539437.1:c.1017C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.581C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1016C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn347Asn
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

15-89442760-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442760
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442760
    reference: chr 15
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1005T>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1030T>A
  hgvsp: ENSP00000456281.1:p.Phe344Ile
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1006T>A
  hgvsp: ENSP00000442386.1:p.Phe336Ile
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.898T>A
  hgvsp: ENSP00000444332.1:p.Phe300Ile
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1030T>A
  hgvsp: ENSP00000268150.8:p.Phe344Ile
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.874T>A
  hgvsp: ENSP00000268151.7:p.Phe292Ile
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.570T>A
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe344Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

15-89442763-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442763
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442763
    reference: chr 15
allele count: 6
allele frequency: 4.942013705851344e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871A>T
  hgvsp: ENSP00000268151.7:p.Ile291Phe
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027A>T
  hgvsp: ENSP00000268150.8:p.Ile343Phe
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027A>T
  hgvsp: ENSP00000456281.1:p.Ile343Phe
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895A>T
  hgvsp: ENSP00000444332.1:p.Ile299Phe
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003A>T
  hgvsp: ENSP00000442386.1:p.Ile335Phe
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile343Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

15-89442763-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442763
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442763
    reference: chr 15
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895A>G
  hgvsp: ENSP00000444332.1:p.Ile299Val
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002A>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003A>G
  hgvsp: ENSP00000442386.1:p.Ile335Val
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567A>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027A>G
  hgvsp: ENSP00000268150.8:p.Ile343Val
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871A>G
  hgvsp: ENSP00000268151.7:p.Ile291Val
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027A>G
  hgvsp: ENSP00000456281.1:p.Ile343Val
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile343Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-89442764-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442764
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442764
    reference: chr 15
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-1G>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-1G>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-1G>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-1G>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-1G>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-1G>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-1G>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1027-1G>T
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

15-89442776-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442776
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442776
    reference: chr 15
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-13G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-13G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-13G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-13G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-13G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-13G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-13G>C
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-89442776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442776
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442776
    reference: chr 15
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-13G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-13G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-13G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-13G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-13G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-13G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-13G>A
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

15-89442777-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442777
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442777
    reference: chr 15
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-14C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-14C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-14C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-14C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-14C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-14C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-14C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

15-89442780-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442780
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442780
    reference: chr 15
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-17A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-17A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-17A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-17A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-17A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-17A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-17A>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

15-89442781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442781
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442781
    reference: chr 15
allele count: 16
allele frequency: 1.317892031695303e-4
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-18C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-18C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-18C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-18C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-18C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-18C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-18C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

15-89442783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442783
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442783
    reference: chr 15
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-20G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-20G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-20G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-20G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-20G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-20G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-20G>A
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41903
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4411
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

15-89442786-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442786
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442786
    reference: chr 15
allele count: 156
allele frequency: 1.284944730902921e-3
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-23C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-23C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-23C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-23C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-23C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-23C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-23C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41933
  bin: 9.75e1
  variant carriers: 154
genotype quality: GenotypeQuality
  all individuals: 4358
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

15-89442786-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442786
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442786
    reference: chr 15
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-23C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-23C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-23C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-23C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-23C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-23C>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-23C>G
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41933
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

15-89442795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442795
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442795
    reference: chr 15
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-32C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-32C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-32C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-32C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-32C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-32C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-32C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-89442796-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442796
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442796
    reference: chr 15
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-33T>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-33T>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-33T>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-33T>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-33T>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-33T>G
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-33T>G
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41962
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

15-89442798-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442798
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442798
    reference: chr 15
allele count: 77
allele frequency: 6.342564372909836e-4
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-35G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-35G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-35G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-35G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-35G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-35G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-35G>C
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 9.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41963
  bin: 9.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

15-89442802-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442802
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442802
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-39G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-39G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-39G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-39G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-39G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-39G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-39G>A
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

15-89442805-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442805
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442805
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-42G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-42G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-42G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-42G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-42G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-42G>C
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-42G>C
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

15-89442806-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442806
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442806
    reference: chr 15
allele count: 5
allele frequency: 4.11868399808893e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1002-43G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1027-43G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.895-43G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.567-43G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1003-43G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-43G>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1027-43G>A
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

15-89442837-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442837
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442837
    reference: chr 15
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1026+50C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1001+50C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.566+50C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1002+50C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1026+50C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.894+50C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-74C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8774
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

15-89442854-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442854
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442854
    reference: chr 15
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1001+33A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.566+33A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1026+33A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1026+33A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-91A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1002+33A>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.894+33A>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33487
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-89442855-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442855
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442855
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-92C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1026+32C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.894+32C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1001+32C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1026+32C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.566+32C>A
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1002+32C>A
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8580
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

15-89442856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442856
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442856
    reference: chr 15
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1002+31C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.894+31C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1026+31C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1001+31C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-93C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.566+31C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1026+31C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-89442861-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89442861
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 89442861
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000444332
  ensembl transcript: ENST00000542878
  gene symbol: MFGE8
  hgvsc: ENST00000542878.1:c.894+26C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000452734
  ensembl transcript: ENST00000558018
  gene symbol: MFGE8
  hgvsc: ENST00000558018.1:c.*1001+26C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268151
  ensembl transcript: ENST00000268151
  gene symbol: MFGE8
  hgvsc: ENST00000268151.7:c.871-98C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000268150
  ensembl transcript: ENST00000268150
  gene symbol: MFGE8
  hgvsc: ENST00000268150.8:c.1026+26C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl transcript: ENST00000560937
  gene symbol: MFGE8
  hgvsc: ENST00000560937.1:n.566+26C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000456281
  ensembl transcript: ENST00000566497
  gene symbol: MFGE8
  hgvsc: ENST00000566497.1:c.1026+26C>T
  variant of: http://identifiers.org/hgnc/7036
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140545
  ensembl protein: ENSP00000442386
  ensembl transcript: ENST00000539437
  gene symbol: MFGE8
  hgvsc: ENST00000539437.1:c.1002+26C>T
  variant of: http://identifiers.org/hgnc/7036
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 791
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 391
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3204
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.434308663224326e-4
allele num: 6972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.759e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.024e0

DP
type: SiteQuality
SIO_000300: 1.19549e5

QD
type: SiteQuality
SIO_000300: 5.83e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

GenotypeQuality
all individuals: 2419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66034
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.388e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.442e0

QD
type: SiteQuality
SIO_000300: 2.617e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 2.697829e6

GenotypeQuality
all individuals: 3034
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 91

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 388
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variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 45
allele frequency: 2.727603345860104e-3
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.706251088281386e-5
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66050
num of homozygotes: 0

East Asian
type: Population
allele count: 46
allele frequency: 5.392731535756155e-3
allele num: 8530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.700012e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.158e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

GenotypeQuality
all individuals: 391
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3028
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3040
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 254
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GenotypeQuality
all individuals: 38710
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variant carriers: 756

GenotypeQuality
all individuals: 2774
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variant carriers: 1

GenotypeQuality
all individuals: 1883
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212121212121212e-4
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 51
allele frequency: 4.434782608695652e-3
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 721
allele frequency: 7.009527513124636e-2
allele num: 10286
num of homozygotes: 28

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.118772322779829e-4
allele num: 66076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.22e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.42e0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

DP
type: SiteQuality
SIO_000300: 2.718016e6

QD
type: SiteQuality
SIO_000300: 1.512e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

GenotypeQuality
all individuals: 2774
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 416
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 2729
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variant carriers: 0

GenotypeQuality
all individuals: 38710
bin: 9.75e1
variant carriers: 11

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 244
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variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.513408801985592e-4
allele num: 66076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.718016e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.22e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

QD
type: SiteQuality
SIO_000300: 1.512e1

GenotypeQuality
all individuals: 3151
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 161
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 38568
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variant carriers: 1

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 2130
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GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66222
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.730119e6

QD
type: SiteQuality
SIO_000300: 1.584e1

VQSLOD
type: SiteQuality
SIO_000300: -1.429e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.32e-1

MQ
type: SiteQuality
SIO_000300: 5.838e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 3.054e0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.27e-1

GenotypeQuality
all individuals: 1954
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38575
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2914
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019688368160406e-5
allele num: 66232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.308e0

FS
type: SiteQuality
SIO_000300: 2.127e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.04e-1

QD
type: SiteQuality
SIO_000300: 1.433e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

DP
type: SiteQuality
SIO_000300: 2.731445e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

GenotypeQuality
all individuals: 335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38595
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 4740
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 2137
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.341785342132685e-4
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818181818181818e-4
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019232511095679e-5
allele num: 66242
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

FS
type: SiteQuality
SIO_000300: 1.631e0

QD
type: SiteQuality
SIO_000300: 1.486e1

MQ
type: SiteQuality
SIO_000300: 6.018e1

DP
type: SiteQuality
SIO_000300: 2.732434e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e-1

GenotypeQuality
all individuals: 3212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 239
bin: 2.25e1
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GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

VQSLOD
type: SiteQuality
SIO_000300: -1.037e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

QD
type: SiteQuality
SIO_000300: 1.573e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

DP
type: SiteQuality
SIO_000300: 2.739393e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.319e0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4175
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 169
bin: 2.25e1
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GenotypeQuality
all individuals: 1657
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2645
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variant carriers: 8

GenotypeQuality
all individuals: 2619
bin: 9.25e1
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GenotypeQuality
all individuals: 42454
bin: 9.75e1
variant carriers: 11436

GenotypeQuality
all individuals: 1771
bin: 8.75e1
variant carriers: 9

East Asian
type: Population
allele count: 288
allele frequency: 3.340292275574112e-2
allele num: 8622
num of homozygotes: 6

Latino
type: Population
allele count: 778
allele frequency: 6.739431739431739e-2
allele num: 11544
num of homozygotes: 36

European (Non-Finnish)
type: Population
allele count: 7254
allele frequency: 1.091582147049087e-1
allele num: 66454
num of homozygotes: 487

South Asian
type: Population
allele count: 2885
allele frequency: 1.747637509086503e-1
allele num: 16508
num of homozygotes: 294

African
type: Population
allele count: 697
allele frequency: 6.727799227799228e-2
allele num: 10360
num of homozygotes: 26

European (Finnish)
type: Population
allele count: 342
allele frequency: 5.186533212010919e-2
allele num: 6594
num of homozygotes: 10

Other
type: Population
allele count: 94
allele frequency: 1.042128603104213e-1
allele num: 902
num of homozygotes: 4

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 6.79e0

DP
type: SiteQuality
SIO_000300: 3.073535e6

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

QD
type: SiteQuality
SIO_000300: 1.685e1

GenotypeQuality
all individuals: 41780
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 6.014856696039217e-5
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Latino
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FS
type: SiteQuality
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BaseQRankSum
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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Latino
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African
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allele frequency: 2.893518518518518e-4
allele num: 10368
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -1.51e0

ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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DP
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MQ
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VQSLOD
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ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.006343384541382e-5
allele num: 66526
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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QD
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ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 1.2e-3

VQSLOD
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DP
type: SiteQuality
SIO_000300: 3.089325e6

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66540
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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allele frequency: 0.0e0
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South Asian
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allele num: 16510
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East Asian
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MQRankSum
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VQSLOD
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MQ
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QD
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FS
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.633911368015414e-5
allele num: 10380
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 904
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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DP
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ReadPosRankSum
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QD
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MQRankSum
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66596
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Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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African
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Latino
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allele frequency: 8.638562543192812e-5
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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African
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East Asian
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Latino
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allele num: 11576
num of homozygotes: 0

InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Other
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European (Finnish)
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African
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South Asian
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Latino
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DP
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FS
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BaseQRankSum
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66656
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Latino
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European (Finnish)
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African
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Other
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East Asian
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South Asian
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BaseQRankSum
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SIO_000300: -8.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 3.095206e6

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 8.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.691e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.192e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

DP
type: SiteQuality
SIO_000300: 3.095446e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 5.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2581
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2793
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.779010633379565e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.096153e6

QD
type: SiteQuality
SIO_000300: 1.337e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.789e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

GenotypeQuality
all individuals: 2776
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 41844
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998141152485459e-5
allele num: 66708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.215e0

FS
type: SiteQuality
SIO_000300: 5.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.663e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.006e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 3.096722e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeQuality
all individuals: 2586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41845
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2778
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.222e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.707e0

QD
type: SiteQuality
SIO_000300: 9.91e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

MQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 3.097404e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
all individuals: 2778
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1762
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2585
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.198968886757389e-4
allele num: 66724
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 3.098201e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.46e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.098098e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.61e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

FS
type: SiteQuality
SIO_000300: 4.605e0

MQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.95e-1

QD
type: SiteQuality
SIO_000300: 1.429e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.056201550387597e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.352e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 3.099129e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.272e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.098916e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.364e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e0

FS
type: SiteQuality
SIO_000300: 4.277e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2776
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.099328e6

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

FS
type: SiteQuality
SIO_000300: 5.444e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.17e-1

QD
type: SiteQuality
SIO_000300: 7.88e0

VQSLOD
type: SiteQuality
SIO_000300: -3.49e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -3.437e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

ReadPosRankSum
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MQ
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VQSLOD
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MQRankSum
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DP
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FS
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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South Asian
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Other
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allele frequency: 0.0e0
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ReadPosRankSum
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VQSLOD
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MQ
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FS
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 5.993586862057598e-5
allele num: 66738
num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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VQSLOD
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

DP
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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QD
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MQ
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VQSLOD
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ClippingRankSum
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SIO_000300: -2.7e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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QD
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MQ
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VQSLOD
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 5.993586862057598e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Other
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South Asian
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Latino
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East Asian
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African
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ReadPosRankSum
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FS
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ClippingRankSum
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8654
num of homozygotes: 0

Latino
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European (Finnish)
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allele num: 6614
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Other
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African
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South Asian
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European (Non-Finnish)
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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FS
type: SiteQuality
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ClippingRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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East Asian
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African
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South Asian
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European (Finnish)
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 5.993766482857828e-5
allele num: 66736
num of homozygotes: 0

Latino
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Other
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African
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allele num: 10406
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South Asian
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European (Finnish)
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East Asian
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MQRankSum
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VQSLOD
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DP
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Other
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African
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East Asian
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Latino
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European (Non-Finnish)
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MQRankSum
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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Other
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East Asian
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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Other
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African
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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Latino
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South Asian
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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Latino
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African
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South Asian
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DP
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InbreedingCoeff
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MQRankSum
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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MQ
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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VQSLOD
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FS
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MQRankSum
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QD
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MQ
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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BaseQRankSum
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DP
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MQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
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DP
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
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SIO_000300: -2.527e0

DP
type: SiteQuality
SIO_000300: 3.106116e6

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.503e0

FS
type: SiteQuality
SIO_000300: 1.234e0

InbreedingCoeff
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SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 3.105787e6

MQ
type: SiteQuality
SIO_000300: 5.926e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.321e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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DP
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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MQRankSum
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VQSLOD
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SIO_000300: 2.16e0

ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495324862143371e-5
allele num: 66736
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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FS
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MQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
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QD
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
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African
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ClippingRankSum
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VQSLOD
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FS
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QD
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DP
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.048940570024275e-4
allele num: 66734
num of homozygotes: 0

Latino
type: Population
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allele frequency: 6.909656244601831e-4
allele num: 11578
num of homozygotes: 0

Other
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East Asian
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African
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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South Asian
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Latino
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Other
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European (Finnish)
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQ
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BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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DP
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FS
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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Other
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Latino
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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FS
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MQ
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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Other
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South Asian
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African
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European (Non-Finnish)
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ClippingRankSum
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ReadPosRankSum
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DP
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Non-Finnish)
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Latino
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
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MQRankSum
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FS
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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East Asian
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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South Asian
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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QD
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MQ
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.321e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.664e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 2.098549e6

VQSLOD
type: SiteQuality
SIO_000300: 1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.306e0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8581
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8764
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 9.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

MQRankSum
type: SiteQuality
SIO_000300: -8.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

DP
type: SiteQuality
SIO_000300: 2.098543e6

QD
type: SiteQuality
SIO_000300: 1.643e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8761
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

MQ
type: SiteQuality
SIO_000300: 5.722e1

VQSLOD
type: SiteQuality
SIO_000300: -4.175e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 1.179e0

DP
type: SiteQuality
SIO_000300: 2.098424e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.732e0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8580
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8760
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.951e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.504e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.8e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 2.098422e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.714e0