11-1471778-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471778
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471778
    reference: chr 11
allele count: 9
allele frequency: 3.544144286051823e-4
allele num: 25394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1288-39G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1288-39G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1354-39G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.373-39G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*461-39G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1426-39G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1288-39G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1108-39G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1288-39G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1354-39G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27341
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15379
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

11-1471782-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471782
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471782
    reference: chr 11
allele count: 1
allele frequency: 3.695491500369549e-5
allele num: 27060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1288-35T>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1354-35T>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.373-35T>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1288-35T>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1108-35T>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*461-35T>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1426-35T>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1288-35T>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1354-35T>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1288-35T>C
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29978
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

11-1471788-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471788
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471788
    reference: chr 11
allele count: 1
allele frequency: 3.407851690294439e-5
allele num: 29344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1288-29C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1426-29C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*461-29C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1288-29C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1288-29C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1108-29C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1288-29C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1354-29C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1354-29C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.373-29C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

11-1471794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471794
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471794
    reference: chr 11
allele count: 1
allele frequency: 3.124218945263684e-5
allele num: 32008
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1426-23C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1354-23C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1354-23C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1108-23C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1288-23C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1288-23C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*461-23C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.373-23C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1288-23C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1288-23C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6787
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-1471798-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471798
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471798
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 34072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1288-19A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1426-19A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1288-19A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.373-19A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1354-19A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1288-19A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1354-19A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1288-19A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*461-19A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1108-19A>G
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33814
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

11-1471805-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471805
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471805
    reference: chr 11
allele count: 4
allele frequency: 1.023174911751164e-4
allele num: 39094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1288-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1288-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.373-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1354-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1108-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*461-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1288-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1354-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1288-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1426-12C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6949
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8348
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32417
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

11-1471806-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471806
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471806
    reference: chr 11
allele count: 31
allele frequency: 7.731058905681081e-4
allele num: 40098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*461-11C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1288-11C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.373-11C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1354-11C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1288-11C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1288-11C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1288-11C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1354-11C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1108-11C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1426-11C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33146
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5505
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

11-1471807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471807
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471807
    reference: chr 11
allele count: 2
allele frequency: 4.877335024142809e-5
allele num: 41006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1288-10C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1354-10C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1288-10C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1426-10C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1288-10C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1354-10C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*461-10C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.373-10C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1288-10C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1108-10C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-1471810-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471810
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471810
    reference: chr 11
allele count: 2
allele frequency: 4.621072088724584e-5
allele num: 43280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1354-7C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1288-7C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.373-7C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1108-7C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1354-7C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1288-7C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*461-7C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1288-7C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1426-7C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1288-7C>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1426-7C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

11-1471811-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471811
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471811
    reference: chr 11
allele count: 1
allele frequency: 2.249313959242431e-5
allele num: 44458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1288-6A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1288-6A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1426-6A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1288-6A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.373-6A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1354-6A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*461-6A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1108-6A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1354-6A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1288-6A>G
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10206
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4569
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1426-6A>G
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

11-1471820-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471820
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471820
    reference: chr 11
allele count: 1
allele frequency: 1.839587932303164e-5
allele num: 54360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1357A>G
  hgvsp: ENSP00000433370.1:p.Thr453Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*464A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1291A>G
  hgvsp: ENSP00000431152.1:p.Thr431Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1429A>G
  hgvsp: ENSP00000371614.1:p.Thr477Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1357A>G
  hgvsp: ENSP00000310805.5:p.Thr453Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1291A>G
  hgvsp: ENSP00000310697.9:p.Thr431Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1111A>G
  hgvsp: ENSP00000433235.1:p.Thr371Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1291A>G
  hgvsp: ENSP00000433684.1:p.Thr431Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.376A>G
  hgvsp: ENSP00000445168.1:p.Thr126Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1291A>G
  hgvsp: ENSP00000432000.1:p.Thr431Ala
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14159
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr477Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

11-1471821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471821
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471821
    reference: chr 11
allele count: 2
allele frequency: 3.598934715324264e-5
allele num: 55572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1112C>T
  hgvsp: ENSP00000433235.1:p.Thr371Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1358C>T
  hgvsp: ENSP00000433370.1:p.Thr453Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.377C>T
  hgvsp: ENSP00000445168.1:p.Thr126Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1430C>T
  hgvsp: ENSP00000371614.1:p.Thr477Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1292C>T
  hgvsp: ENSP00000431152.1:p.Thr431Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1292C>T
  hgvsp: ENSP00000310697.9:p.Thr431Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1358C>T
  hgvsp: ENSP00000310805.5:p.Thr453Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*465C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1292C>T
  hgvsp: ENSP00000433684.1:p.Thr431Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1292C>T
  hgvsp: ENSP00000432000.1:p.Thr431Ile
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14624
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6950
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr477Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

11-1471823-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471823
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471823
    reference: chr 11
allele count: 1
allele frequency: 1.709810894915022e-5
allele num: 58486
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.379C>G
  hgvsp: ENSP00000445168.1:p.Pro127Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*467C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1294C>G
  hgvsp: ENSP00000310697.9:p.Pro432Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1360C>G
  hgvsp: ENSP00000433370.1:p.Pro454Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1432C>G
  hgvsp: ENSP00000371614.1:p.Pro478Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1360C>G
  hgvsp: ENSP00000310805.5:p.Pro454Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1294C>G
  hgvsp: ENSP00000433684.1:p.Pro432Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1294C>G
  hgvsp: ENSP00000431152.1:p.Pro432Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1294C>G
  hgvsp: ENSP00000432000.1:p.Pro432Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1114C>G
  hgvsp: ENSP00000433235.1:p.Pro372Ala
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro478Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-1471823-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471823
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471823
    reference: chr 11
allele count: 1
allele frequency: 1.709810894915022e-5
allele num: 58486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1360C>T
  hgvsp: ENSP00000433370.1:p.Pro454Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1294C>T
  hgvsp: ENSP00000433684.1:p.Pro432Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1294C>T
  hgvsp: ENSP00000310697.9:p.Pro432Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*467C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.379C>T
  hgvsp: ENSP00000445168.1:p.Pro127Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1294C>T
  hgvsp: ENSP00000432000.1:p.Pro432Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1114C>T
  hgvsp: ENSP00000433235.1:p.Pro372Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1360C>T
  hgvsp: ENSP00000310805.5:p.Pro454Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1432C>T
  hgvsp: ENSP00000371614.1:p.Pro478Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1294C>T
  hgvsp: ENSP00000431152.1:p.Pro432Ser
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro478Ser
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/11-1471830-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471830
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471830
    reference: chr 11
allele count: 2
allele frequency: 2.851602600661572e-5
allele num: 70136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.386C>A
  hgvsp: ENSP00000445168.1:p.Pro129His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*474C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1367C>A
  hgvsp: ENSP00000433370.1:p.Pro456His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1301C>A
  hgvsp: ENSP00000310697.9:p.Pro434His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1367C>A
  hgvsp: ENSP00000310805.5:p.Pro456His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1121C>A
  hgvsp: ENSP00000433235.1:p.Pro374His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1301C>A
  hgvsp: ENSP00000433684.1:p.Pro434His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1439C>A
  hgvsp: ENSP00000371614.1:p.Pro480His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1301C>A
  hgvsp: ENSP00000432000.1:p.Pro434His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1301C>A
  hgvsp: ENSP00000431152.1:p.Pro434His
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22371
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro480His
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

11-1471831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471831
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471831
    reference: chr 11
allele count: 80
allele frequency: 1.119100243404303e-3
allele num: 71486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.387C>T
  hgvsp: ENST00000544817.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1440C>T
  hgvsp: ENST00000382179.1:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1302C>T
  hgvsp: ENST00000308219.9:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1368C>T
  hgvsp: ENST00000526678.1:c.1368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1302C>T
  hgvsp: ENST00000531197.1:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1122C>T
  hgvsp: ENST00000528710.1:c.1122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1302C>T
  hgvsp: ENST00000529433.1:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1302C>T
  hgvsp: ENST00000528841.1:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1368C>T
  hgvsp: ENST00000308230.5:c.1368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*475C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21139
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22250
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro480Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/11-1471843-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471843
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471843
    reference: chr 11
allele count: 2
allele frequency: 2.351281448389372e-5
allele num: 85060
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1452C>A
  hgvsp: ENST00000382179.1:c.1452C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1134C>A
  hgvsp: ENST00000528710.1:c.1134C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.399C>A
  hgvsp: ENST00000544817.1:c.399C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1314C>A
  hgvsp: ENST00000308219.9:c.1314C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1380C>A
  hgvsp: ENST00000526678.1:c.1380C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1314C>A
  hgvsp: ENST00000531197.1:c.1314C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1380C>A
  hgvsp: ENST00000308230.5:c.1380C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1314C>A
  hgvsp: ENST00000529433.1:c.1314C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1314C>A
  hgvsp: ENST00000528841.1:c.1314C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*487C>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27211
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly484Gly
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

11-1471843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471843
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471843
    reference: chr 11
allele count: 3
allele frequency: 3.526922172584059e-5
allele num: 85060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1314C>T
  hgvsp: ENST00000529433.1:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1380C>T
  hgvsp: ENST00000526678.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.399C>T
  hgvsp: ENST00000544817.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1134C>T
  hgvsp: ENST00000528710.1:c.1134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1452C>T
  hgvsp: ENST00000382179.1:c.1452C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*487C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1314C>T
  hgvsp: ENST00000308219.9:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1380C>T
  hgvsp: ENST00000308230.5:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1314C>T
  hgvsp: ENST00000531197.1:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1314C>T
  hgvsp: ENST00000528841.1:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27211
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly484Gly
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

11-1471845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471845
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471845
    reference: chr 11
allele count: 1
allele frequency: 1.151330938564981e-5
allele num: 86856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1316G>A
  hgvsp: ENSP00000432000.1:p.Ser439Asn
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1382G>A
  hgvsp: ENSP00000433370.1:p.Ser461Asn
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1454G>A
  hgvsp: ENSP00000371614.1:p.Ser485Asn
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.401G>A
  hgvsp: ENSP00000445168.1:p.Ser134Asn
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1136G>A
  hgvsp: ENSP00000433235.1:p.Ser379Asn
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1316G>A
  hgvsp: ENSP00000310697.9:p.Ser439Asn
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1316G>A
  hgvsp: ENSP00000431152.1:p.Ser439Asn
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1382G>A
  hgvsp: ENSP00000310805.5:p.Ser461Asn
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1316G>A
  hgvsp: ENSP00000433684.1:p.Ser439Asn
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*489G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser485Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-1471846-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471846
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471846
    reference: chr 11
allele count: 1
allele frequency: 1.144976985962582e-5
allele num: 87338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1317T>A
  hgvsp: ENSP00000310697.9:p.Ser439Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.402T>A
  hgvsp: ENSP00000445168.1:p.Ser134Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1383T>A
  hgvsp: ENSP00000310805.5:p.Ser461Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1455T>A
  hgvsp: ENSP00000371614.1:p.Ser485Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1383T>A
  hgvsp: ENSP00000433370.1:p.Ser461Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1317T>A
  hgvsp: ENSP00000431152.1:p.Ser439Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*490T>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1317T>A
  hgvsp: ENSP00000433684.1:p.Ser439Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1317T>A
  hgvsp: ENSP00000432000.1:p.Ser439Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1137T>A
  hgvsp: ENSP00000433235.1:p.Ser379Arg
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13901
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser485Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

11-1471849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471849
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471849
    reference: chr 11
allele count: 12
allele frequency: 1.340722202359671e-4
allele num: 89504
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1458C>T
  hgvsp: ENST00000382179.1:c.1458C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1386C>T
  hgvsp: ENST00000526678.1:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1386C>T
  hgvsp: ENST00000308230.5:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*493C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1320C>T
  hgvsp: ENST00000308219.9:c.1320C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1320C>T
  hgvsp: ENST00000529433.1:c.1320C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1320C>T
  hgvsp: ENST00000528841.1:c.1320C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1140C>T
  hgvsp: ENST00000528710.1:c.1140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1320C>T
  hgvsp: ENST00000531197.1:c.1320C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.405C>T
  hgvsp: ENST00000544817.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28400
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro486Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-1471850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471850
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471850
    reference: chr 11
allele count: 1
allele frequency: 1.108352544777443e-5
allele num: 90224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.406C>T
  hgvsp: ENSP00000445168.1:p.Leu136Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1321C>T
  hgvsp: ENSP00000433684.1:p.Leu441Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1459C>T
  hgvsp: ENSP00000371614.1:p.Leu487Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*494C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1387C>T
  hgvsp: ENSP00000310805.5:p.Leu463Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1387C>T
  hgvsp: ENSP00000433370.1:p.Leu463Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1321C>T
  hgvsp: ENSP00000431152.1:p.Leu441Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1321C>T
  hgvsp: ENSP00000310697.9:p.Leu441Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1141C>T
  hgvsp: ENSP00000433235.1:p.Leu381Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1321C>T
  hgvsp: ENSP00000432000.1:p.Leu441Phe
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31344
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu487Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

11-1471852-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471852
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471852
    reference: chr 11
allele count: 1
allele frequency: 1.092776745710851e-5
allele num: 91510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1143C>T
  hgvsp: ENST00000528710.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1461C>T
  hgvsp: ENST00000382179.1:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*496C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1389C>T
  hgvsp: ENST00000526678.1:c.1389C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1323C>T
  hgvsp: ENST00000528841.1:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.408C>T
  hgvsp: ENST00000544817.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1323C>T
  hgvsp: ENST00000308219.9:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1323C>T
  hgvsp: ENST00000529433.1:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1323C>T
  hgvsp: ENST00000531197.1:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1389C>T
  hgvsp: ENST00000308230.5:c.1389C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu487Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

11-1471854-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471854
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471854
    reference: chr 11
allele count: 2
allele frequency: 2.156659765355418e-5
allele num: 92736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1391C>T
  hgvsp: ENSP00000433370.1:p.Pro464Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1325C>T
  hgvsp: ENSP00000310697.9:p.Pro442Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1325C>T
  hgvsp: ENSP00000433684.1:p.Pro442Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1391C>T
  hgvsp: ENSP00000310805.5:p.Pro464Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*498C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1145C>T
  hgvsp: ENSP00000433235.1:p.Pro382Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1325C>T
  hgvsp: ENSP00000431152.1:p.Pro442Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1325C>T
  hgvsp: ENSP00000432000.1:p.Pro442Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.410C>T
  hgvsp: ENSP00000445168.1:p.Pro137Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1463C>T
  hgvsp: ENSP00000371614.1:p.Pro488Leu
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro488Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

11-1471855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471855
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471855
    reference: chr 11
allele count: 3
allele frequency: 3.215434083601286e-5
allele num: 93300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1326C>T
  hgvsp: ENST00000528841.1:c.1326C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*499C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1464C>T
  hgvsp: ENST00000382179.1:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1146C>T
  hgvsp: ENST00000528710.1:c.1146C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1326C>T
  hgvsp: ENST00000529433.1:c.1326C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.411C>T
  hgvsp: ENST00000544817.1:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1326C>T
  hgvsp: ENST00000531197.1:c.1326C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1392C>T
  hgvsp: ENST00000526678.1:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1326C>T
  hgvsp: ENST00000308219.9:c.1326C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1392C>T
  hgvsp: ENST00000308230.5:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro488Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

11-1471857-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471857
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471857
    reference: chr 11
allele count: 5
allele frequency: 5.289773809271916e-5
allele num: 94522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1148C>G
  hgvsp: ENSP00000433235.1:p.Thr383Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1394C>G
  hgvsp: ENSP00000310805.5:p.Thr465Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1328C>G
  hgvsp: ENSP00000310697.9:p.Thr443Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1328C>G
  hgvsp: ENSP00000431152.1:p.Thr443Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1328C>G
  hgvsp: ENSP00000433684.1:p.Thr443Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.413C>G
  hgvsp: ENSP00000445168.1:p.Thr138Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1466C>G
  hgvsp: ENSP00000371614.1:p.Thr489Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1394C>G
  hgvsp: ENSP00000433370.1:p.Thr465Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1328C>G
  hgvsp: ENSP00000432000.1:p.Thr443Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*501C>G
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30530
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr489Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-1471866-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471866
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471866
    reference: chr 11
allele count: 1
allele frequency: 1.001021041462292e-5
allele num: 99898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1403G>A
  hgvsp: ENSP00000310805.5:p.Gly468Glu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1337G>A
  hgvsp: ENSP00000433684.1:p.Gly446Glu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1475G>A
  hgvsp: ENSP00000371614.1:p.Gly492Glu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1403G>A
  hgvsp: ENSP00000433370.1:p.Gly468Glu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1337G>A
  hgvsp: ENSP00000432000.1:p.Gly446Glu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.422G>A
  hgvsp: ENSP00000445168.1:p.Gly141Glu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1337G>A
  hgvsp: ENSP00000310697.9:p.Gly446Glu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*510G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1157G>A
  hgvsp: ENSP00000433235.1:p.Gly386Glu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1337G>A
  hgvsp: ENSP00000431152.1:p.Gly446Glu
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly492Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

11-1471868-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471868
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471868
    reference: chr 11
allele count: 1
allele frequency: 9.946487895124232e-6
allele num: 100538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1405A>G
  hgvsp: ENSP00000310805.5:p.Thr469Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1339A>G
  hgvsp: ENSP00000431152.1:p.Thr447Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*512A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.424A>G
  hgvsp: ENSP00000445168.1:p.Thr142Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1405A>G
  hgvsp: ENSP00000433370.1:p.Thr469Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1339A>G
  hgvsp: ENSP00000310697.9:p.Thr447Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1477A>G
  hgvsp: ENSP00000371614.1:p.Thr493Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1339A>G
  hgvsp: ENSP00000433684.1:p.Thr447Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1339A>G
  hgvsp: ENSP00000432000.1:p.Thr447Ala
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1159A>G
  hgvsp: ENSP00000433235.1:p.Thr387Ala
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr493Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-1471869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471869
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471869
    reference: chr 11
allele count: 1
allele frequency: 9.917093101670038e-6
allele num: 100836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.425C>T
  hgvsp: ENSP00000445168.1:p.Thr142Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1406C>T
  hgvsp: ENSP00000310805.5:p.Thr469Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1340C>T
  hgvsp: ENSP00000433684.1:p.Thr447Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*513C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1340C>T
  hgvsp: ENSP00000431152.1:p.Thr447Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1340C>T
  hgvsp: ENSP00000310697.9:p.Thr447Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1160C>T
  hgvsp: ENSP00000433235.1:p.Thr387Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1406C>T
  hgvsp: ENSP00000433370.1:p.Thr469Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1478C>T
  hgvsp: ENSP00000371614.1:p.Thr493Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1340C>T
  hgvsp: ENSP00000432000.1:p.Thr447Ile
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr493Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

11-1471871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471871
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471871
    reference: chr 11
allele count: 1
allele frequency: 9.845039084805167e-6
allele num: 101574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1342C>T
  hgvsp: ENSP00000310697.9:p.Pro448Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1342C>T
  hgvsp: ENSP00000431152.1:p.Pro448Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1408C>T
  hgvsp: ENSP00000310805.5:p.Pro470Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*515C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1342C>T
  hgvsp: ENSP00000432000.1:p.Pro448Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1408C>T
  hgvsp: ENSP00000433370.1:p.Pro470Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1342C>T
  hgvsp: ENSP00000433684.1:p.Pro448Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.427C>T
  hgvsp: ENSP00000445168.1:p.Pro143Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1162C>T
  hgvsp: ENSP00000433235.1:p.Pro388Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1480C>T
  hgvsp: ENSP00000371614.1:p.Pro494Ser
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33961
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro494Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum

11-1471881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471881
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471881
    reference: chr 11
allele count: 4
allele frequency: 3.84926286616113e-5
allele num: 103916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1418C>T
  hgvsp: ENSP00000433370.1:p.Thr473Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.437C>T
  hgvsp: ENSP00000445168.1:p.Thr146Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1352C>T
  hgvsp: ENSP00000433684.1:p.Thr451Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1352C>T
  hgvsp: ENSP00000310697.9:p.Thr451Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1352C>T
  hgvsp: ENSP00000432000.1:p.Thr451Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1352C>T
  hgvsp: ENSP00000431152.1:p.Thr451Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*525C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1172C>T
  hgvsp: ENSP00000433235.1:p.Thr391Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1490C>T
  hgvsp: ENSP00000371614.1:p.Thr497Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1418C>T
  hgvsp: ENSP00000310805.5:p.Thr473Met
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10507
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40417
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr497Met
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

11-1471882-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471882
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471882
    reference: chr 11
allele count: 18
allele frequency: 1.728143781562626e-4
allele num: 104158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.438G>A
  hgvsp: ENST00000544817.1:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1419G>A
  hgvsp: ENST00000526678.1:c.1419G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1353G>A
  hgvsp: ENST00000529433.1:c.1353G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*526G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1353G>A
  hgvsp: ENST00000308219.9:c.1353G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1353G>A
  hgvsp: ENST00000528841.1:c.1353G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1491G>A
  hgvsp: ENST00000382179.1:c.1491G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1173G>A
  hgvsp: ENST00000528710.1:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1353G>A
  hgvsp: ENST00000531197.1:c.1353G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1419G>A
  hgvsp: ENST00000308230.5:c.1419G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34395
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10663
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr497Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

11-1471888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471888
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471888
    reference: chr 11
allele count: 1
allele frequency: 9.481728708778184e-6
allele num: 105466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1359G>A
  hgvsp: ENST00000308219.9:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.444G>A
  hgvsp: ENST00000544817.1:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*532G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1359G>A
  hgvsp: ENST00000528841.1:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1359G>A
  hgvsp: ENST00000531197.1:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1425G>A
  hgvsp: ENST00000308230.5:c.1425G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1425G>A
  hgvsp: ENST00000526678.1:c.1425G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1359G>A
  hgvsp: ENST00000529433.1:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1179G>A
  hgvsp: ENST00000528710.1:c.1179G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1497G>A
  hgvsp: ENST00000382179.1:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys499Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-1471889-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471889
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471889
    reference: chr 11
allele count: 1
allele frequency: 9.469338282640808e-6
allele num: 105604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1360G>A
  hgvsp: ENSP00000310697.9:p.Glu454Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1360G>A
  hgvsp: ENSP00000432000.1:p.Glu454Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1360G>A
  hgvsp: ENSP00000431152.1:p.Glu454Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1360G>A
  hgvsp: ENSP00000433684.1:p.Glu454Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*533G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1498G>A
  hgvsp: ENSP00000371614.1:p.Glu500Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1426G>A
  hgvsp: ENSP00000310805.5:p.Glu476Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1426G>A
  hgvsp: ENSP00000433370.1:p.Glu476Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1180G>A
  hgvsp: ENSP00000433235.1:p.Glu394Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.445G>A
  hgvsp: ENSP00000445168.1:p.Glu149Lys
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu500Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

11-1471897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471897
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471897
    reference: chr 11
allele count: 16
allele frequency: 1.502911891790344e-4
allele num: 106460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.453G>A
  hgvsp: ENST00000544817.1:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1188G>A
  hgvsp: ENST00000528710.1:c.1188G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1434G>A
  hgvsp: ENST00000308230.5:c.1434G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1368G>A
  hgvsp: ENST00000529433.1:c.1368G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1368G>A
  hgvsp: ENST00000528841.1:c.1368G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*541G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1506G>A
  hgvsp: ENST00000382179.1:c.1506G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1434G>A
  hgvsp: ENST00000526678.1:c.1434G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1368G>A
  hgvsp: ENST00000308219.9:c.1368G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1368G>A
  hgvsp: ENST00000531197.1:c.1368G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33707
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro502Pro
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-1471901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471901
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471901
    reference: chr 11
allele count: 1
allele frequency: 9.362769881841844e-6
allele num: 106806
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.457G>A
  hgvsp: ENSP00000445168.1:p.Gly153Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1372G>A
  hgvsp: ENSP00000432000.1:p.Gly458Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1510G>A
  hgvsp: ENSP00000371614.1:p.Gly504Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1372G>A
  hgvsp: ENSP00000431152.1:p.Gly458Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1372G>A
  hgvsp: ENSP00000433684.1:p.Gly458Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1438G>A
  hgvsp: ENSP00000310805.5:p.Gly480Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*545G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1438G>A
  hgvsp: ENSP00000433370.1:p.Gly480Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1372G>A
  hgvsp: ENSP00000310697.9:p.Gly458Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1192G>A
  hgvsp: ENSP00000433235.1:p.Gly398Ser
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly504Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

11-1471903-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471903
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471903
    reference: chr 11
allele count: 1
allele frequency: 9.361192241443871e-6
allele num: 106824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*547C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1374C>T
  hgvsp: ENST00000528841.1:c.1374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1374C>T
  hgvsp: ENST00000308219.9:c.1374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1194C>T
  hgvsp: ENST00000528710.1:c.1194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.459C>T
  hgvsp: ENST00000544817.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1440C>T
  hgvsp: ENST00000308230.5:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1374C>T
  hgvsp: ENST00000531197.1:c.1374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1512C>T
  hgvsp: ENST00000382179.1:c.1512C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1374C>T
  hgvsp: ENST00000529433.1:c.1374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1440C>T
  hgvsp: ENST00000526678.1:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly504Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

11-1471905-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471905
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471905
    reference: chr 11
allele count: 3
allele frequency: 2.803319129849742e-5
allele num: 107016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1196C>T
  hgvsp: ENSP00000433235.1:p.Thr399Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1514C>T
  hgvsp: ENSP00000371614.1:p.Thr505Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1442C>T
  hgvsp: ENSP00000310805.5:p.Thr481Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1376C>T
  hgvsp: ENSP00000433684.1:p.Thr459Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*549C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1376C>T
  hgvsp: ENSP00000310697.9:p.Thr459Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.461C>T
  hgvsp: ENSP00000445168.1:p.Thr154Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1442C>T
  hgvsp: ENSP00000433370.1:p.Thr481Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1376C>T
  hgvsp: ENSP00000431152.1:p.Thr459Met
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1376C>T
  hgvsp: ENSP00000432000.1:p.Thr459Met
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32920
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr505Met
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

11-1471906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471906
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471906
    reference: chr 11
allele count: 726
allele frequency: 6.77807861077397e-3
allele num: 107110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1377G>A
  hgvsp: ENST00000308219.9:c.1377G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1443G>A
  hgvsp: ENST00000526678.1:c.1443G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1515G>A
  hgvsp: ENST00000382179.1:c.1515G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1377G>A
  hgvsp: ENST00000529433.1:c.1377G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1197G>A
  hgvsp: ENST00000528710.1:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.462G>A
  hgvsp: ENST00000544817.1:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1377G>A
  hgvsp: ENST00000531197.1:c.1377G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1377G>A
  hgvsp: ENST00000528841.1:c.1377G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1443G>A
  hgvsp: ENST00000308230.5:c.1443G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*550G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 2.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 32503
  bin: 2.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 1.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 3.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 1.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Thr505Thr
num of homozygotes: 5
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-1471907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471907
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471907
    reference: chr 11
allele count: 2
allele frequency: 1.864280387770321e-5
allele num: 107280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1378C>T
  hgvsp: ENSP00000432000.1:p.Pro460Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1378C>T
  hgvsp: ENSP00000431152.1:p.Pro460Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*551C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.463C>T
  hgvsp: ENSP00000445168.1:p.Pro155Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1444C>T
  hgvsp: ENSP00000310805.5:p.Pro482Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1378C>T
  hgvsp: ENSP00000433684.1:p.Pro460Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1198C>T
  hgvsp: ENSP00000433235.1:p.Pro400Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1444C>T
  hgvsp: ENSP00000433370.1:p.Pro482Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1516C>T
  hgvsp: ENSP00000371614.1:p.Pro506Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1378C>T
  hgvsp: ENSP00000310697.9:p.Pro460Ser
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39602
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro506Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-1471914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471914
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471914
    reference: chr 11
allele count: 1
allele frequency: 9.2724811305009e-6
allele num: 107846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1385C>T
  hgvsp: ENSP00000432000.1:p.Pro462Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1523C>T
  hgvsp: ENSP00000371614.1:p.Pro508Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1451C>T
  hgvsp: ENSP00000433370.1:p.Pro484Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1205C>T
  hgvsp: ENSP00000433235.1:p.Pro402Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1385C>T
  hgvsp: ENSP00000431152.1:p.Pro462Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1385C>T
  hgvsp: ENSP00000433684.1:p.Pro462Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1451C>T
  hgvsp: ENSP00000310805.5:p.Pro484Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1385C>T
  hgvsp: ENSP00000310697.9:p.Pro462Leu
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*558C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.470C>T
  hgvsp: ENSP00000445168.1:p.Pro157Leu
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro508Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

11-1471915-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471915
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471915
    reference: chr 11
allele count: 3
allele frequency: 2.779012894619831e-5
allele num: 107952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1206C>T
  hgvsp: ENST00000528710.1:c.1206C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.1C>T
  hgvsp: ENST00000533606.1:c.1C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1386C>T
  hgvsp: ENST00000531197.1:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1386C>T
  hgvsp: ENST00000529433.1:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1452C>T
  hgvsp: ENST00000308230.5:c.1452C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1452C>T
  hgvsp: ENST00000526678.1:c.1452C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.471C>T
  hgvsp: ENST00000544817.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*559C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1386C>T
  hgvsp: ENST00000308219.9:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1524C>T
  hgvsp: ENST00000382179.1:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1386C>T
  hgvsp: ENST00000528841.1:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13430
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro508Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

11-1471918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471918
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471918
    reference: chr 11
allele count: 45
allele frequency: 4.158964879852126e-4
allele num: 108200
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1527G>A
  hgvsp: ENST00000382179.1:c.1527G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1389G>A
  hgvsp: ENST00000529433.1:c.1389G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.474G>A
  hgvsp: ENST00000544817.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1455G>A
  hgvsp: ENST00000308230.5:c.1455G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1389G>A
  hgvsp: ENST00000531197.1:c.1389G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1389G>A
  hgvsp: ENST00000308219.9:c.1389G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1389G>A
  hgvsp: ENST00000528841.1:c.1389G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1455G>A
  hgvsp: ENST00000526678.1:c.1455G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1209G>A
  hgvsp: ENST00000528710.1:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.4G>A
  hgvsp: ENST00000533606.1:c.4G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*562G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13790
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32123
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr509Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

11-1471921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471921
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471921
    reference: chr 11
allele count: 1
allele frequency: 9.200647725599883e-6
allele num: 108688
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1530C>T
  hgvsp: ENST00000382179.1:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*565C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1392C>T
  hgvsp: ENST00000308219.9:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1458C>T
  hgvsp: ENST00000526678.1:c.1458C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1458C>T
  hgvsp: ENST00000308230.5:c.1458C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.477C>T
  hgvsp: ENST00000544817.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.7C>T
  hgvsp: ENST00000533606.1:c.7C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1392C>T
  hgvsp: ENST00000529433.1:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1392C>T
  hgvsp: ENST00000531197.1:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1392C>T
  hgvsp: ENST00000528841.1:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1212C>T
  hgvsp: ENST00000528710.1:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro510Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

11-1471924-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471924
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471924
    reference: chr 11
allele count: 14
allele frequency: 1.282074763274053e-4
allele num: 109198
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1533G>A
  hgvsp: ENST00000382179.1:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1395G>A
  hgvsp: ENST00000529433.1:c.1395G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1395G>A
  hgvsp: ENST00000308219.9:c.1395G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.480G>A
  hgvsp: ENST00000544817.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1461G>A
  hgvsp: ENST00000526678.1:c.1461G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.10G>A
  hgvsp: ENST00000533606.1:c.10G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*568G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1461G>A
  hgvsp: ENST00000308230.5:c.1461G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1395G>A
  hgvsp: ENST00000528841.1:c.1395G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1395G>A
  hgvsp: ENST00000531197.1:c.1395G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1215G>A
  hgvsp: ENST00000528710.1:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14717
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32412
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro511Pro
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

11-1471936-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471936
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471936
    reference: chr 11
allele count: 2
allele frequency: 1.81596963698767e-5
allele num: 110134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1407C>T
  hgvsp: ENST00000531197.1:c.1407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1227C>T
  hgvsp: ENST00000528710.1:c.1227C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*580C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1473C>T
  hgvsp: ENST00000308230.5:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.492C>T
  hgvsp: ENST00000544817.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1545C>T
  hgvsp: ENST00000382179.1:c.1545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1407C>T
  hgvsp: ENST00000529433.1:c.1407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.22C>T
  hgvsp: ENST00000533606.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1473C>T
  hgvsp: ENST00000526678.1:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1407C>T
  hgvsp: ENST00000308219.9:c.1407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1407C>T
  hgvsp: ENST00000528841.1:c.1407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser515Ser
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

11-1471937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471937
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471937
    reference: chr 11
allele count: 42
allele frequency: 3.807727874381244e-4
allele num: 110302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.23G>A
  hgvsp: ENSP00000436474.1:p.Val9Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1408G>A
  hgvsp: ENSP00000433684.1:p.Val470Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1408G>A
  hgvsp: ENSP00000310697.9:p.Val470Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1474G>A
  hgvsp: ENSP00000310805.5:p.Val492Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.493G>A
  hgvsp: ENSP00000445168.1:p.Val165Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1408G>A
  hgvsp: ENSP00000432000.1:p.Val470Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1546G>A
  hgvsp: ENSP00000371614.1:p.Val516Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1474G>A
  hgvsp: ENSP00000433370.1:p.Val492Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*581G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1228G>A
  hgvsp: ENSP00000433235.1:p.Val410Ile
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1408G>A
  hgvsp: ENSP00000431152.1:p.Val470Ile
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 32893
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15134
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val516Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

11-1471939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471939
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471939
    reference: chr 11
allele count: 4
allele frequency: 3.62154821186057e-5
allele num: 110450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1410C>T
  hgvsp: ENST00000531197.1:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*583C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1410C>T
  hgvsp: ENST00000308219.9:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1476C>T
  hgvsp: ENST00000308230.5:c.1476C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.495C>T
  hgvsp: ENST00000544817.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1410C>T
  hgvsp: ENST00000528841.1:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1548C>T
  hgvsp: ENST00000382179.1:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.25C>T
  hgvsp: ENST00000533606.1:c.25C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1476C>T
  hgvsp: ENST00000526678.1:c.1476C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1410C>T
  hgvsp: ENST00000529433.1:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1230C>T
  hgvsp: ENST00000528710.1:c.1230C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33074
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val516Val
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

11-1471939-CGGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471939
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471936
    reference: chr 11
allele count: 1
allele frequency: 9.053870529651426e-6
allele num: 110450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.498_500delAGG
  hgvsp: ENSP00000445168.1:p.Gly167del
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.28_30delAGG
  hgvsp: ENSP00000436474.1:p.Gly11del
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1479_1481delAGG
  hgvsp: ENSP00000433370.1:p.Gly494del
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*586_*588delAGG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1413_1415delAGG
  hgvsp: ENSP00000431152.1:p.Gly472del
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1413_1415delAGG
  hgvsp: ENSP00000310697.9:p.Gly472del
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1413_1415delAGG
  hgvsp: ENSP00000433684.1:p.Gly472del
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1233_1235delAGG
  hgvsp: ENSP00000433235.1:p.Gly412del
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1551_1553delAGG
  hgvsp: ENSP00000371614.1:p.Gly518del
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1413_1415delAGG
  hgvsp: ENSP00000432000.1:p.Gly472del
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1479_1481delAGG
  hgvsp: ENSP00000310805.5:p.Gly494del
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly518del
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: CGGA
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

11-1471940-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471940
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471940
    reference: chr 11
allele count: 2
allele frequency: 1.809496236247828e-5
allele num: 110528
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1411G>A
  hgvsp: ENSP00000433684.1:p.Gly471Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1231G>A
  hgvsp: ENSP00000433235.1:p.Gly411Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.496G>A
  hgvsp: ENSP00000445168.1:p.Gly166Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1477G>A
  hgvsp: ENSP00000433370.1:p.Gly493Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1411G>A
  hgvsp: ENSP00000310697.9:p.Gly471Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1411G>A
  hgvsp: ENSP00000431152.1:p.Gly471Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*584G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.26G>A
  hgvsp: ENSP00000436474.1:p.Gly10Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1549G>A
  hgvsp: ENSP00000371614.1:p.Gly517Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1477G>A
  hgvsp: ENSP00000310805.5:p.Gly493Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1411G>A
  hgvsp: ENSP00000432000.1:p.Gly471Arg
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly517Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

11-1471942-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471942
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471942
    reference: chr 11
allele count: 1
allele frequency: 9.03995660820828e-6
allele num: 110620
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1551A>T
  hgvsp: ENST00000382179.1:c.1551A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1413A>T
  hgvsp: ENST00000308219.9:c.1413A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*586A>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1479A>T
  hgvsp: ENST00000526678.1:c.1479A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1233A>T
  hgvsp: ENST00000528710.1:c.1233A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1479A>T
  hgvsp: ENST00000308230.5:c.1479A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1413A>T
  hgvsp: ENST00000529433.1:c.1413A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1413A>T
  hgvsp: ENST00000528841.1:c.1413A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.498A>T
  hgvsp: ENST00000544817.1:c.498A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1413A>T
  hgvsp: ENST00000531197.1:c.1413A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.28A>T
  hgvsp: ENST00000533606.1:c.28A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly517Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

11-1471957-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471957
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471957
    reference: chr 11
allele count: 5
allele frequency: 4.506128334534967e-5
allele num: 110960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*601G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.43G>A
  hgvsp: ENST00000533606.1:c.43G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1428G>A
  hgvsp: ENST00000529433.1:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1428G>A
  hgvsp: ENST00000528841.1:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1494G>A
  hgvsp: ENST00000526678.1:c.1494G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1428G>A
  hgvsp: ENST00000531197.1:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1248G>A
  hgvsp: ENST00000528710.1:c.1248G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.513G>A
  hgvsp: ENST00000544817.1:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1428G>A
  hgvsp: ENST00000308219.9:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1494G>A
  hgvsp: ENST00000308230.5:c.1494G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1566G>A
  hgvsp: ENST00000382179.1:c.1566G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33041
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15438
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg522Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

11-1471958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471958
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471958
    reference: chr 11
allele count: 1
allele frequency: 9.010470166333279e-6
allele num: 110982
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1567G>A
  hgvsp: ENSP00000371614.1:p.Ala523Thr
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1429G>A
  hgvsp: ENSP00000310697.9:p.Ala477Thr
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1495G>A
  hgvsp: ENSP00000433370.1:p.Ala499Thr
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1495G>A
  hgvsp: ENSP00000310805.5:p.Ala499Thr
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1429G>A
  hgvsp: ENSP00000431152.1:p.Ala477Thr
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1249G>A
  hgvsp: ENSP00000433235.1:p.Ala417Thr
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1429G>A
  hgvsp: ENSP00000432000.1:p.Ala477Thr
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.44G>A
  hgvsp: ENSP00000436474.1:p.Ala16Thr
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1429G>A
  hgvsp: ENSP00000433684.1:p.Ala477Thr
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.514G>A
  hgvsp: ENSP00000445168.1:p.Ala172Thr
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*602G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala523Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

11-1471959-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471959
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471959
    reference: chr 11
allele count: 1
allele frequency: 9.016156953260242e-6
allele num: 110912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1430C>T
  hgvsp: ENSP00000310697.9:p.Ala477Val
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1496C>T
  hgvsp: ENSP00000433370.1:p.Ala499Val
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1250C>T
  hgvsp: ENSP00000433235.1:p.Ala417Val
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.45C>T
  hgvsp: ENSP00000436474.1:p.Ala16Val
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1430C>T
  hgvsp: ENSP00000433684.1:p.Ala477Val
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1568C>T
  hgvsp: ENSP00000371614.1:p.Ala523Val
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.515C>T
  hgvsp: ENSP00000445168.1:p.Ala172Val
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*603C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1430C>T
  hgvsp: ENSP00000432000.1:p.Ala477Val
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1430C>T
  hgvsp: ENSP00000431152.1:p.Ala477Val
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1496C>T
  hgvsp: ENSP00000310805.5:p.Ala499Val
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala523Val
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum

11-1471960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471960
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471960
    reference: chr 11
allele count: 6
allele frequency: 5.402971634398919e-5
allele num: 111050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.516G>A
  hgvsp: ENST00000544817.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1431G>A
  hgvsp: ENST00000528841.1:c.1431G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1497G>A
  hgvsp: ENST00000308230.5:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*604G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1431G>A
  hgvsp: ENST00000308219.9:c.1431G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1251G>A
  hgvsp: ENST00000528710.1:c.1251G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1431G>A
  hgvsp: ENST00000529433.1:c.1431G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1569G>A
  hgvsp: ENST00000382179.1:c.1569G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1497G>A
  hgvsp: ENST00000526678.1:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.46G>A
  hgvsp: ENST00000533606.1:c.46G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1431G>A
  hgvsp: ENST00000531197.1:c.1431G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15455
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala523Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

11-1471966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471966
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471966
    reference: chr 11
allele count: 5
allele frequency: 4.500126003528099e-5
allele num: 111108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1503C>T
  hgvsp: ENST00000308230.5:c.1503C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1437C>T
  hgvsp: ENST00000531197.1:c.1437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1437C>T
  hgvsp: ENST00000529433.1:c.1437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1437C>T
  hgvsp: ENST00000308219.9:c.1437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1503C>T
  hgvsp: ENST00000526678.1:c.1503C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1437C>T
  hgvsp: ENST00000528841.1:c.1437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.522C>T
  hgvsp: ENST00000544817.1:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1257C>T
  hgvsp: ENST00000528710.1:c.1257C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1575C>T
  hgvsp: ENST00000382179.1:c.1575C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*610C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.52C>T
  hgvsp: ENST00000533606.1:c.52C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu525Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

11-1471977-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471977
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471977
    reference: chr 11
allele count: 1
allele frequency: 9.006088115566123e-6
allele num: 111036
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1448A>G
  hgvsp: ENSP00000433684.1:p.Lys483Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1448A>G
  hgvsp: ENSP00000432000.1:p.Lys483Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1514A>G
  hgvsp: ENSP00000433370.1:p.Lys505Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.533A>G
  hgvsp: ENSP00000445168.1:p.Lys178Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1448A>G
  hgvsp: ENSP00000431152.1:p.Lys483Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1268A>G
  hgvsp: ENSP00000433235.1:p.Lys423Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1448A>G
  hgvsp: ENSP00000310697.9:p.Lys483Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.63A>G
  hgvsp: ENSP00000436474.1:p.Lys22Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1514A>G
  hgvsp: ENSP00000310805.5:p.Lys505Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1586A>G
  hgvsp: ENSP00000371614.1:p.Lys529Arg
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*621A>G
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys529Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

11-1471981-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471981
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471981
    reference: chr 11
allele count: 1
allele frequency: 9.033586876004987e-6
allele num: 110698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1272C>T
  hgvsp: ENST00000528710.1:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1518C>T
  hgvsp: ENST00000526678.1:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1452C>T
  hgvsp: ENST00000528841.1:c.1452C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1518C>T
  hgvsp: ENST00000308230.5:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1452C>T
  hgvsp: ENST00000308219.9:c.1452C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.537C>T
  hgvsp: ENST00000544817.1:c.537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1452C>T
  hgvsp: ENST00000529433.1:c.1452C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1590C>T
  hgvsp: ENST00000382179.1:c.1590C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*625C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1452C>T
  hgvsp: ENST00000531197.1:c.1452C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.67C>T
  hgvsp: ENST00000533606.1:c.67C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn530Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

11-1471984-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471984
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471984
    reference: chr 11
allele count: 1
allele frequency: 9.073257480900793e-6
allele num: 110214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1455C>T
  hgvsp: ENST00000529433.1:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.540C>T
  hgvsp: ENST00000544817.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1593C>T
  hgvsp: ENST00000382179.1:c.1593C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.70C>T
  hgvsp: ENST00000533606.1:c.70C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1455C>T
  hgvsp: ENST00000528841.1:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*628C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1521C>T
  hgvsp: ENST00000308230.5:c.1521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1521C>T
  hgvsp: ENST00000526678.1:c.1521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1455C>T
  hgvsp: ENST00000531197.1:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1455C>T
  hgvsp: ENST00000308219.9:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1275C>T
  hgvsp: ENST00000528710.1:c.1275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser531Ser
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

11-1471993-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1471993
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1471993
    reference: chr 11
allele count: 1
allele frequency: 9.221689413500553e-6
allele num: 108440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1464C>T
  hgvsp: ENST00000308219.9:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1464C>T
  hgvsp: ENST00000529433.1:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1530C>T
  hgvsp: ENST00000308230.5:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1530C>T
  hgvsp: ENST00000526678.1:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.549C>T
  hgvsp: ENST00000544817.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1464C>T
  hgvsp: ENST00000528841.1:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.79C>T
  hgvsp: ENST00000533606.1:c.79C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1284C>T
  hgvsp: ENST00000528710.1:c.1284C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1602C>T
  hgvsp: ENST00000382179.1:c.1602C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*637C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1464C>T
  hgvsp: ENST00000531197.1:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14595
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29335
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly534Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

11-1472001-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1472001
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1472001
    reference: chr 11
allele count: 3
allele frequency: 2.813572674582184e-5
allele num: 106626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*645G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1472G>A
  hgvsp: ENSP00000431152.1:p.Arg491His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1538G>A
  hgvsp: ENSP00000310805.5:p.Arg513His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.87G>A
  hgvsp: ENSP00000436474.1:p.Arg30His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1292G>A
  hgvsp: ENSP00000433235.1:p.Arg431His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1472G>A
  hgvsp: ENSP00000310697.9:p.Arg491His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1472G>A
  hgvsp: ENSP00000433684.1:p.Arg491His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1472G>A
  hgvsp: ENSP00000432000.1:p.Arg491His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.557G>A
  hgvsp: ENSP00000445168.1:p.Arg186His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1610G>A
  hgvsp: ENSP00000371614.1:p.Arg537His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1538G>A
  hgvsp: ENSP00000433370.1:p.Arg513His
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13614
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg537His
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

11-1472012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1472012
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1472012
    reference: chr 11
allele count: 1
allele frequency: 9.674548198599126e-6
allele num: 103364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1483C>T
  hgvsp: ENSP00000433684.1:p.Arg495Trp
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.568C>T
  hgvsp: ENSP00000445168.1:p.Arg190Trp
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.98C>T
  hgvsp: ENSP00000436474.1:p.Arg34Trp
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1621C>T
  hgvsp: ENSP00000371614.1:p.Arg541Trp
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1483C>T
  hgvsp: ENSP00000310697.9:p.Arg495Trp
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*656C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1549C>T
  hgvsp: ENSP00000433370.1:p.Arg517Trp
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1303C>T
  hgvsp: ENSP00000433235.1:p.Arg435Trp
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1483C>T
  hgvsp: ENSP00000431152.1:p.Arg495Trp
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1483C>T
  hgvsp: ENSP00000432000.1:p.Arg495Trp
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1549C>T
  hgvsp: ENSP00000310805.5:p.Arg517Trp
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg541Trp
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

11-1472013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1472013
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1472013
    reference: chr 11
allele count: 5
allele frequency: 4.863340142009532e-5
allele num: 102810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1304G>A
  hgvsp: ENSP00000433235.1:p.Arg435Gln
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1484G>A
  hgvsp: ENSP00000431152.1:p.Arg495Gln
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.99G>A
  hgvsp: ENSP00000436474.1:p.Arg34Gln
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1484G>A
  hgvsp: ENSP00000433684.1:p.Arg495Gln
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1622G>A
  hgvsp: ENSP00000371614.1:p.Arg541Gln
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1484G>A
  hgvsp: ENSP00000432000.1:p.Arg495Gln
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*657G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1484G>A
  hgvsp: ENSP00000310697.9:p.Arg495Gln
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1550G>A
  hgvsp: ENSP00000310805.5:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1550G>A
  hgvsp: ENSP00000433370.1:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.569G>A
  hgvsp: ENSP00000445168.1:p.Arg190Gln
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10986
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg541Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

11-1472023-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1472023
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1472023
    reference: chr 11
allele count: 1
allele frequency: 9.989211651416471e-6
allele num: 100108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1494A>G
  hgvsp: ENST00000528841.1:c.1494A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1494A>G
  hgvsp: ENST00000531197.1:c.1494A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*667A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.579A>G
  hgvsp: ENST00000544817.1:c.579A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.109A>G
  hgvsp: ENST00000533606.1:c.109A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1314A>G
  hgvsp: ENST00000528710.1:c.1314A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1560A>G
  hgvsp: ENST00000526678.1:c.1560A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1494A>G
  hgvsp: ENST00000308219.9:c.1494A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1494A>G
  hgvsp: ENST00000529433.1:c.1494A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1632A>G
  hgvsp: ENST00000382179.1:c.1632A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1560A>G
  hgvsp: ENST00000308230.5:c.1560A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1632A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

11-1472029-GTGTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1472029
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1472025
    reference: chr 11
allele count: 1
allele frequency: 1.040820999604488e-5
allele num: 96078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1315+8_1315+11delTCTG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.110+8_110+11delTCTG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1561+8_1561+11delTCTG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*668+8_*668+11delTCTG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.580+8_580+11delTCTG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1561+8_1561+11delTCTG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1495+8_1495+11delTCTG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1495+8_1495+11delTCTG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1495+8_1495+11delTCTG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1633+8_1633+11delTCTG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1495+8_1495+11delTCTG
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1633+8_1633+11delTCTG
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: GTGTC
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

11-1472038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1472038
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1472038
    reference: chr 11
allele count: 1
allele frequency: 1.123343068973264e-5
allele num: 89020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1561+14C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1561+14C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.580+14C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1633+14C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1315+14C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1495+14C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1495+14C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.110+14C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1495+14C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*668+14C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1495+14C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

11-1472039-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1472039
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1472039
    reference: chr 11
allele count: 37
allele frequency: 4.266014850343587e-4
allele num: 86732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1495+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*668+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1561+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1633+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.110+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1495+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1561+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1495+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.580+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1315+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1495+15G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12270
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22305
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7275
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4644
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

11-1472042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1472042
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1472042
    reference: chr 11
allele count: 3
allele frequency: 3.473589143876062e-5
allele num: 86366
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1633+18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1561+18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.580+18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1495+18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1495+18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1495+18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*668+18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1561+18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000436474
  ensembl transcript: ENST00000533606
  gene symbol: BRSK2
  hgvsc: ENST00000533606.1:c.110+18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.1315+18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1495+18G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22202
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22705
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

11-1472044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1472044
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1472044
    reference: chr 11
allele count: 1
allele frequency: 1.187140889880811e-5
allele num: 84236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1495+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1561+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.580+20C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4502
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4119
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 934
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 3.852673755586377e-4
allele num: 12978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.463054187192118e-3
allele num: 406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.435064935064935e-3
allele num: 1232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7482
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.88535e5

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

FS
type: SiteQuality
SIO_000300: 1.696e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.37e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1850
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2709
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13301
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5237
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.173601147776183e-5
allele num: 13940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1376
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.11e-2

DP
type: SiteQuality
SIO_000300: 5.18507e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 9.050000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.86e-2

GenotypeQuality
all individuals: 167
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.513809275664408e-5
allele num: 15352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.218e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.9e0

DP
type: SiteQuality
SIO_000300: 5.54916e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.905976848570754e-5
allele num: 16932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.06e-2

FS
type: SiteQuality
SIO_000300: 3.358e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.82e1

DP
type: SiteQuality
SIO_000300: 5.8335e5

QD
type: SiteQuality
SIO_000300: 6.24e0

VQSLOD
type: SiteQuality
SIO_000300: -2.409e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.87e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.462e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.03421e5

QD
type: SiteQuality
SIO_000300: 5.19e0

GenotypeQuality
all individuals: 746
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 171
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variant carriers: 4

GenotypeQuality
all individuals: 9151
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2108
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.143641354071363e-4
allele num: 8744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3108
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 7.716049382716049e-4
allele num: 2592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.709428275407365e-5
allele num: 21234
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

QD
type: SiteQuality
SIO_000300: 1.065e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.54e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

DP
type: SiteQuality
SIO_000300: 6.45293e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 464
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 33

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 4.553734061930783e-4
allele num: 2196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 9.152480322167307e-4
allele num: 21852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.15059861373661e-4
allele num: 3174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2676
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.020176830650646e-3
allele num: 8822
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.821e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

DP
type: SiteQuality
SIO_000300: 6.52731e5

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.14e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2776
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.256317689530686e-4
allele num: 8864
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.534e1

MQRankSum
type: SiteQuality
SIO_000300: 8.32e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

FS
type: SiteQuality
SIO_000300: 2.101e0

DP
type: SiteQuality
SIO_000300: 6.59691e5

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.87e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3402
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
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South Asian
type: Population
allele count: 2
allele frequency: 2.206044562100154e-4
allele num: 9066
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.107e0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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ClippingRankSum
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SIO_000300: 6.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

DP
type: SiteQuality
SIO_000300: 6.79452e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1282
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.164556962025316e-3
allele num: 316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.256e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

FS
type: SiteQuality
SIO_000300: 4.483e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 6.86843e5

GenotypeQuality
all individuals: 791
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30388
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.304147465437788e-4
allele num: 4340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

DP
type: SiteQuality
SIO_000300: 7.68032e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

QD
type: SiteQuality
SIO_000300: 7.44e0

FS
type: SiteQuality
SIO_000300: 8.316000000000001e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.430454633142563e-5
allele num: 31102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

DP
type: SiteQuality
SIO_000300: 7.78212e5

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 2.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e-1

QD
type: SiteQuality
SIO_000300: 8.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
all individuals: 779
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.761811792268645e-5
allele num: 10244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1862
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.246e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.03214e5

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

QD
type: SiteQuality
SIO_000300: 9.66e0

GenotypeQuality
all individuals: 316
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 865
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
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variant carriers: 0

GenotypeQuality
all individuals: 16534
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.247191011235955e-4
allele num: 4450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1862
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.03214e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.246e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

QD
type: SiteQuality
SIO_000300: 9.66e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2402
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.101736972704715e-4
allele num: 6448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4994
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 9.33e0

DP
type: SiteQuality
SIO_000300: 9.02621e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 79

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 74
allele frequency: 1.843915080235224e-3
allele num: 40132
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.766478342749529e-4
allele num: 5310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2464
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 6.033182503770739e-4
allele num: 6630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
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VQSLOD
type: SiteQuality
SIO_000300: 5.44e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.14566e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1110
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.584283903675539e-4
allele num: 6312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101635072086083e-5
allele num: 47582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.007e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

QD
type: SiteQuality
SIO_000300: 9.06e0

FS
type: SiteQuality
SIO_000300: 1.984e0

DP
type: SiteQuality
SIO_000300: 1.032218e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 239
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2006
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variant carriers: 0

GenotypeQuality
all individuals: 1968
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.951653944020357e-5
allele num: 12576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3082
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.361275088547816e-4
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47582
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.06e0

FS
type: SiteQuality
SIO_000300: 1.984e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.007e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.032218e6

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

GenotypeQuality
all individuals: 1919
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.056935988152049e-5
allele num: 48616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.048098e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.344e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1583
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8734
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.818608287724784e-5
allele num: 12790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.695e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 1.053422e6

QD
type: SiteQuality
SIO_000300: 5.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 30456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 758
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variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.397596134648405e-4
allele num: 50086
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.308757888256118e-4
allele num: 12994
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.02571860816944e-4
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3360
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 1.076697e6

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.980668673744256e-5
allele num: 50488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 9.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

DP
type: SiteQuality
SIO_000300: 1.08351e6

QD
type: SiteQuality
SIO_000300: 1.422e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.435544071202986e-4
allele num: 6966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13200
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.077e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 1.095603e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.859215807347947e-5
allele num: 51824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6862
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 3.091e1

MQRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.918428423435522e-5
allele num: 52126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3660
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.896032435563278e-4
allele num: 6906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.273e0

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.609e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.215e0

DP
type: SiteQuality
SIO_000300: 1.110953e6

GenotypeQuality
all individuals: 1287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7018
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.387732445184569e-4
allele num: 7206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.578341101132961e-5
allele num: 52782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.123546e6

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.75e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

FS
type: SiteQuality
SIO_000300: 6.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.79830240253201e-5
allele num: 55608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.69e-1

FS
type: SiteQuality
SIO_000300: 4.275e0

VQSLOD
type: SiteQuality
SIO_000300: 2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.341e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.99e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

DP
type: SiteQuality
SIO_000300: 1.179194e6

QD
type: SiteQuality
SIO_000300: 1.526e1

GenotypeQuality
all individuals: 1109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.786926843215039e-5
allele num: 55962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14192
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.184875e6

QD
type: SiteQuality
SIO_000300: 1.177e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-2

MQ
type: SiteQuality
SIO_000300: 5.839e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.046e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

GenotypeQuality
all individuals: 1232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
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variant carriers: 0

GenotypeQuality
all individuals: 134
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GenotypeQuality
all individuals: 8570
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 283
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GenotypeQuality
all individuals: 1022
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14250
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.301744337412132e-4
allele num: 7682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56114
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

FS
type: SiteQuality
SIO_000300: 4.298e0

VQSLOD
type: SiteQuality
SIO_000300: -2.276e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.506e0

QD
type: SiteQuality
SIO_000300: 5.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.195e0

DP
type: SiteQuality
SIO_000300: 1.18903e6

GenotypeQuality
all individuals: 8290
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 358
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.978367062107467e-5
allele num: 14330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 1.196908e6

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.351e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

FS
type: SiteQuality
SIO_000300: 4.269e0

QD
type: SiteQuality
SIO_000300: 9.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.927846478922026e-5
allele num: 57738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2987e1

VQSLOD
type: SiteQuality
SIO_000300: -8.907e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

DP
type: SiteQuality
SIO_000300: 1.224877e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
type: SiteQuality
SIO_000300: 1.158e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 186
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 196
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.901403581552928e-4
allele num: 57852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4536
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.725166916473634e-4
allele num: 14678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.883593897155773e-4
allele num: 10618
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.261352169525732e-4
allele num: 7928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7808
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.161e0

DP
type: SiteQuality
SIO_000300: 1.229739e6

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.109e1

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 57
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.248127808287569e-4
allele num: 8012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10740
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
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SIO_000300: 1.335e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

FS
type: SiteQuality
SIO_000300: 2.633e0

VQSLOD
type: SiteQuality
SIO_000300: -1.231e0

MQ
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SIO_000300: 5.862e1

DP
type: SiteQuality
SIO_000300: 1.241944e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.471e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.706426401829289e-5
allele num: 58602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14846
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VQSLOD
type: SiteQuality
SIO_000300: -4.682e-1

FS
type: SiteQuality
SIO_000300: 1.093e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.61e0

QD
type: SiteQuality
SIO_000300: 1.232e1

MQ
type: SiteQuality
SIO_000300: 5.876e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-1

DP
type: SiteQuality
SIO_000300: 1.243445e6

GenotypeQuality
all individuals: 1065
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 208
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GenotypeQuality
all individuals: 60
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variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.25240562546262e-5
allele num: 10808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.184914347620015e-4
allele num: 59076
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.466401194624191e-4
allele num: 8036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4790
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.339225927413955e-4
allele num: 14934
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

FS
type: SiteQuality
SIO_000300: 4.067e0

DP
type: SiteQuality
SIO_000300: 1.252289e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

GenotypeQuality
all individuals: 200
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variant carriers: 0

GenotypeQuality
all individuals: 41007
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 335
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GenotypeQuality
all individuals: 198
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.687763713080169e-5
allele num: 59250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4824
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.01e-1

FS
type: SiteQuality
SIO_000300: 1.0976e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.432e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 1.255151e6

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.37e-1

QD
type: SiteQuality
SIO_000300: 9.48e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 507
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GenotypeQuality
all individuals: 3262
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.236399604352127e-4
allele num: 8088
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.05e0

FS
type: SiteQuality
SIO_000300: 5.066e0

QD
type: SiteQuality
SIO_000300: 2.515e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.539e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.256259e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1293
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10844
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.231830500123183e-4
allele num: 8118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.683785149014986e-5
allele num: 59390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4856
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.680919294494922e-5
allele num: 14968
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.221e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 1.257287e6

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 711

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 716
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GenotypeQuality
all individuals: 170
bin: 8.25e1
variant carriers: 4

Latino
type: Population
allele count: 38
allele frequency: 3.502304147465438e-3
allele num: 10850
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 555
allele frequency: 9.341547162189457e-3
allele num: 59412
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 83
allele frequency: 1.704312114989733e-2
allele num: 4870
num of homozygotes: 0

South Asian
type: Population
allele count: 31
allele frequency: 2.068321323725647e-3
allele num: 14988
num of homozygotes: 1

Other
type: Population
allele count: 10
allele frequency: 1.329787234042553e-2
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 8.622813500862281e-4
allele num: 8118
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.463054187192118e-4
allele num: 8120
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.26818e6

QD
type: SiteQuality
SIO_000300: 1.237e1

VQSLOD
type: SiteQuality
SIO_000300: 5.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1189
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 180
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GenotypeQuality
all individuals: 1339
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GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 733
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.679712433231431e-5
allele num: 59534
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.665777896280495e-5
allele num: 15002
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.883e0

InbreedingCoeff
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SIO_000300: -2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.966e0

DP
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SIO_000300: 1.261578e6

QD
type: SiteQuality
SIO_000300: 1.149e1

MQRankSum
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SIO_000300: 4.11e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 7.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.672073036150219e-5
allele num: 59806
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ClippingRankSum
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SIO_000300: -1.77e-1

ReadPosRankSum
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DP
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BaseQRankSum
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SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.434e0

InbreedingCoeff
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SIO_000300: -1.5e-3

QD
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SIO_000300: 2.363e1

VQSLOD
type: SiteQuality
SIO_000300: -1.88e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 630
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.01018738100805e-5
allele num: 59878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15060
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.74e-1

FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 3.29e-1

QD
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SIO_000300: 1.423e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
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SIO_000300: 1.272391e6

InbreedingCoeff
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SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 45

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 866
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GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.826817683595177e-4
allele num: 10948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 6.663557006730193e-4
allele num: 60028
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.218026796589525e-4
allele num: 8210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.635700066357e-5
allele num: 15070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.008838891120932e-4
allele num: 4978
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 3.228e0

VQSLOD
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SIO_000300: 2.06e0

QD
type: SiteQuality
SIO_000300: 1.261e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

DP
type: SiteQuality
SIO_000300: 1.280724e6

GenotypeDepth
all individuals: 87
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variant carriers: 0

GenotypeDepth
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 617
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.619886137958427e-5
allele num: 15106
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

BaseQRankSum
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SIO_000300: -1.954e0

ClippingRankSum
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MQRankSum
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QD
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SIO_000300: 2.424e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -2.353e0

FS
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.28645e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 752
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.318565400843882e-4
allele num: 15168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5062
num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.538852578068265e-4
allele num: 11016
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.400960384153662e-4
allele num: 8330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.251914444151043e-5
allele num: 60592
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

BaseQRankSum
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ClippingRankSum
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MQRankSum
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QD
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.764e0

VQSLOD
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DP
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SIO_000300: 1.297965e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 9.033423667570009e-5
allele num: 11070
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.636018585171127e-5
allele num: 61124
num of homozygotes: 0

East Asian
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allele count: 0
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allele num: 8356
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5194
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.1e-3

BaseQRankSum
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ClippingRankSum
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MQ
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FS
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DP
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 506
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GenotypeQuality
all individuals: 172
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.302083333333333e-3
allele num: 768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5216
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.534239414532148e-5
allele num: 61216
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 32
allele frequency: 3.831417624521073e-3
allele num: 8352
num of homozygotes: 0

South Asian
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allele frequency: 3.289906566653507e-4
allele num: 15198
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

BaseQRankSum
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SIO_000300: -1.09e-1

FS
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SIO_000300: 1.101e0

ReadPosRankSum
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QD
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ClippingRankSum
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SIO_000300: -2.2e-2

VQSLOD
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MQ
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InbreedingCoeff
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SIO_000300: -2.3e-3

DP
type: SiteQuality
SIO_000300: 1.309529e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5240
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.573757559821194e-5
allele num: 15212
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.895082074209444e-5
allele num: 61286
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.353e1

InbreedingCoeff
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DP
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SIO_000300: 1.31001e6

FS
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SIO_000300: 8.05e-1

ReadPosRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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SIO_000300: 2.98e-1

ClippingRankSum
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SIO_000300: -4.42e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 9.020386072523904e-5
allele num: 11086
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61286
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.353e1

InbreedingCoeff
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ClippingRankSum
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SIO_000300: -4.42e-1

MQRankSum
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DP
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SIO_000300: 1.31001e6

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 8.05e-1

VQSLOD
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SIO_000300: 3.35e0

ReadPosRankSum
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SIO_000300: 5.8e-1

MQ
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SIO_000300: 5.95e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5242
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.260302556077204e-5
allele num: 61344
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.082e1

ClippingRankSum
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SIO_000300: 1.26e-1

DP
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InbreedingCoeff
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SIO_000300: -1.2e-3

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -4.1e-2

MQRankSum
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SIO_000300: -2.86e-1

FS
type: SiteQuality
SIO_000300: 5.752e0

VQSLOD
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SIO_000300: 1.39e0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5242
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.62898286310028e-5
allele num: 61388
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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Latino
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 3.76081233546446e-4
allele num: 5318
num of homozygotes: 0

Latino
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South Asian
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allele frequency: 6.597176408497163e-5
allele num: 15158
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East Asian
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European (Non-Finnish)
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allele frequency: 3.244646333549643e-5
allele num: 61640
num of homozygotes: 0

InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.621902166861295e-5
allele num: 61656
num of homozygotes: 0

African
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Latino
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East Asian
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Other
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European (Finnish)
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South Asian
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele num: 61640
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

FS
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SIO_000300: 8.120000000000001e-1

ClippingRankSum
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SIO_000300: -1.11e-1

ReadPosRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.6e-3

DP
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QD
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MQRankSum
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SIO_000300: 3.34e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

Latino
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allele frequency: 0.0e0
allele num: 11132
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 8.101626806662777e-5
allele num: 61716
num of homozygotes: 0

African
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allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.3e-3

VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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MQRankSum
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QD
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FS
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MQ
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SIO_000300: 5.945e1

ClippingRankSum
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SIO_000300: -7.47e-1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 4.490749056942698e-4
allele num: 11134
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 61780
num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.923e1

InbreedingCoeff
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SIO_000300: -1.8e-3

ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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FS
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SIO_000300: 1.734e0

ClippingRankSum
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SIO_000300: -2.58e-1

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.646284726837697e-5
allele num: 15046
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 780
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61804
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

MQRankSum
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MQ
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DP
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 14948
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.621849557235071e-5
allele num: 61658
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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MQ
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ClippingRankSum
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QD
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MQRankSum
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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Latino
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allele frequency: 9.049773755656108e-5
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European (Non-Finnish)
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European (Finnish)
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South Asian
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
type: Population
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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FS
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MQ
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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MQ
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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allele frequency: 1.714971702966901e-5
allele num: 58310
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Latino
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East Asian
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Other
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European (Finnish)
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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allele frequency: 1.295001295001295e-4
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 5.172057099510379e-5
allele num: 58004
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Other
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ClippingRankSum
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Latino
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South Asian
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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QD
type: SiteQuality
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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Latino
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East Asian
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European (Non-Finnish)
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Other
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MQ
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ClippingRankSum
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ReadPosRankSum
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DP
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 630
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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African
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European (Non-Finnish)
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 5780
num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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allele frequency: 3.600432051846222e-4
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South Asian
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African
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Latino
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Other
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ClippingRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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African
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East Asian
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European (Finnish)
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Other
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.298e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

DP
type: SiteQuality
SIO_000300: 8.05466e5

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0