12-124846694-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846694
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846694
    reference: chr 12
allele count: 102
allele frequency: 1.594298039951233e-3
allele num: 63978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.3024G>A
  hgvsp: ENST00000404621.1:c.3024G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1737G>A
  hgvsp: ENST00000404121.2:c.1737G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3078G>A
  hgvsp: ENST00000405201.1:c.3078G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3075G>A
  hgvsp: ENST00000356219.3:c.3075G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3078G>A
  hgvsp: ENST00000458234.1:c.3078G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.3024G>A
  hgvsp: ENST00000429285.2:c.3024G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.3027G>A
  hgvsp: ENST00000397355.1:c.3027G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18433
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7243
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17139
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5248
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Pro1026Pro
num of homozygotes: 1
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-124846695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846695
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846695
    reference: chr 12
allele count: 13
allele frequency: 1.996069278958359e-4
allele num: 65128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3077C>T
  hgvsp: ENSP00000402808.1:p.Pro1026Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3077C>T
  hgvsp: ENSP00000384018.1:p.Pro1026Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3074C>T
  hgvsp: ENSP00000348551.3:p.Pro1025Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1736C>T
  hgvsp: ENSP00000385618.2:p.Pro579Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.3026C>T
  hgvsp: ENSP00000380513.1:p.Pro1009Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.3023C>T
  hgvsp: ENSP00000384202.1:p.Pro1008Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.3023C>T
  hgvsp: ENSP00000400281.2:p.Pro1008Leu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18077
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19426
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5269
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro1026Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

12-124846710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846710
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846710
    reference: chr 12
allele count: 1
allele frequency: 1.412070377587619e-5
allele num: 70818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3059G>A
  hgvsp: ENSP00000348551.3:p.Gly1020Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1721G>A
  hgvsp: ENSP00000385618.2:p.Gly574Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.3011G>A
  hgvsp: ENSP00000380513.1:p.Gly1004Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3062G>A
  hgvsp: ENSP00000384018.1:p.Gly1021Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.3008G>A
  hgvsp: ENSP00000400281.2:p.Gly1003Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.3008G>A
  hgvsp: ENSP00000384202.1:p.Gly1003Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3062G>A
  hgvsp: ENSP00000402808.1:p.Gly1021Asp
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20541
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5179
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly1021Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-124846711-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846711
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846711
    reference: chr 12
allele count: 2
allele frequency: 2.808357672433161e-5
allele num: 71216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3061G>A
  hgvsp: ENSP00000402808.1:p.Gly1021Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.3010G>A
  hgvsp: ENSP00000380513.1:p.Gly1004Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3058G>A
  hgvsp: ENSP00000348551.3:p.Gly1020Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3061G>A
  hgvsp: ENSP00000384018.1:p.Gly1021Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.3007G>A
  hgvsp: ENSP00000400281.2:p.Gly1003Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.3007G>A
  hgvsp: ENSP00000384202.1:p.Gly1003Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1720G>A
  hgvsp: ENSP00000385618.2:p.Gly574Ser
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20475
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly1021Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

12-124846713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846713
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846713
    reference: chr 12
allele count: 9
allele frequency: 1.263051532502526e-4
allele num: 71256
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3059G>A
  hgvsp: ENSP00000384018.1:p.Arg1020Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.3005G>A
  hgvsp: ENSP00000400281.2:p.Arg1002Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3056G>A
  hgvsp: ENSP00000348551.3:p.Arg1019Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3059G>A
  hgvsp: ENSP00000402808.1:p.Arg1020Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.3008G>A
  hgvsp: ENSP00000380513.1:p.Arg1003Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.3005G>A
  hgvsp: ENSP00000384202.1:p.Arg1002Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1718G>A
  hgvsp: ENSP00000385618.2:p.Arg573Gln
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20128
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg1020Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

12-124846714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846714
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846714
    reference: chr 12
allele count: 2
allele frequency: 2.803319129849742e-5
allele num: 71344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3055C>T
  hgvsp: ENSP00000348551.3:p.Arg1019Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.3007C>T
  hgvsp: ENSP00000380513.1:p.Arg1003Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.3004C>T
  hgvsp: ENSP00000384202.1:p.Arg1002Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3058C>T
  hgvsp: ENSP00000384018.1:p.Arg1020Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1717C>T
  hgvsp: ENSP00000385618.2:p.Arg573Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3058C>T
  hgvsp: ENSP00000402808.1:p.Arg1020Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.3004C>T
  hgvsp: ENSP00000400281.2:p.Arg1002Trp
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5333
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17034
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg1020Trp
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-124846734-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846734
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846734
    reference: chr 12
allele count: 1
allele frequency: 1.342065707537041e-5
allele num: 74512
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3035A>C
  hgvsp: ENSP00000348551.3:p.Gln1012Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2984A>C
  hgvsp: ENSP00000400281.2:p.Gln995Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3038A>C
  hgvsp: ENSP00000402808.1:p.Gln1013Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1697A>C
  hgvsp: ENSP00000385618.2:p.Gln566Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2987A>C
  hgvsp: ENSP00000380513.1:p.Gln996Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3038A>C
  hgvsp: ENSP00000384018.1:p.Gln1013Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2984A>C
  hgvsp: ENSP00000384202.1:p.Gln995Pro
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19507
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln1013Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

12-124846739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846739
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846739
    reference: chr 12
allele count: 1
allele frequency: 1.337542132577176e-5
allele num: 74764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3033C>T
  hgvsp: ENST00000458234.1:c.3033C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2979C>T
  hgvsp: ENST00000429285.2:c.2979C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3030C>T
  hgvsp: ENST00000356219.3:c.3030C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2979C>T
  hgvsp: ENST00000404621.1:c.2979C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3033C>T
  hgvsp: ENST00000405201.1:c.3033C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1692C>T
  hgvsp: ENST00000404121.2:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2982C>T
  hgvsp: ENST00000397355.1:c.2982C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5339
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala1011Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

12-124846739-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846739
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846739
    reference: chr 12
allele count: 1
allele frequency: 1.337542132577176e-5
allele num: 74764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2979C>G
  hgvsp: ENST00000404621.1:c.2979C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3030C>G
  hgvsp: ENST00000356219.3:c.3030C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2982C>G
  hgvsp: ENST00000397355.1:c.2982C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2979C>G
  hgvsp: ENST00000429285.2:c.2979C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3033C>G
  hgvsp: ENST00000458234.1:c.3033C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3033C>G
  hgvsp: ENST00000405201.1:c.3033C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1692C>G
  hgvsp: ENST00000404121.2:c.1692C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19173
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala1011Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

12-124846741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846741
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846741
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 74306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3031G>A
  hgvsp: ENSP00000402808.1:p.Ala1011Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2977G>A
  hgvsp: ENSP00000384202.1:p.Ala993Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3028G>A
  hgvsp: ENSP00000348551.3:p.Ala1010Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3031G>A
  hgvsp: ENSP00000384018.1:p.Ala1011Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2980G>A
  hgvsp: ENSP00000380513.1:p.Ala994Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2977G>A
  hgvsp: ENSP00000400281.2:p.Ala993Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1690G>A
  hgvsp: ENSP00000385618.2:p.Ala564Thr
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14278
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1011Thr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

12-124846742-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846742
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846742
    reference: chr 12
allele count: 1
allele frequency: 1.339656512070305e-5
allele num: 74646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3030C>T
  hgvsp: ENST00000458234.1:c.3030C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3027C>T
  hgvsp: ENST00000356219.3:c.3027C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3030C>T
  hgvsp: ENST00000405201.1:c.3030C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2979C>T
  hgvsp: ENST00000397355.1:c.2979C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2976C>T
  hgvsp: ENST00000404621.1:c.2976C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1689C>T
  hgvsp: ENST00000404121.2:c.1689C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2976C>T
  hgvsp: ENST00000429285.2:c.2976C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18616
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5395
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp1010Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

12-124846744-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846744
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846744
    reference: chr 12
allele count: 3
allele frequency: 4.013592700612742e-5
allele num: 74746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2977G>A
  hgvsp: ENSP00000380513.1:p.Asp993Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2974G>A
  hgvsp: ENSP00000384202.1:p.Asp992Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3028G>A
  hgvsp: ENSP00000384018.1:p.Asp1010Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3025G>A
  hgvsp: ENSP00000348551.3:p.Asp1009Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3028G>A
  hgvsp: ENSP00000402808.1:p.Asp1010Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2974G>A
  hgvsp: ENSP00000400281.2:p.Asp992Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1687G>A
  hgvsp: ENSP00000385618.2:p.Asp563Asn
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19555
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp1010Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

12-124846745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846745
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846745
    reference: chr 12
allele count: 4
allele frequency: 5.352459455119628e-5
allele num: 74732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3027C>T
  hgvsp: ENST00000458234.1:c.3027C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2973C>T
  hgvsp: ENST00000404621.1:c.2973C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3024C>T
  hgvsp: ENST00000356219.3:c.3024C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2976C>T
  hgvsp: ENST00000397355.1:c.2976C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3027C>T
  hgvsp: ENST00000405201.1:c.3027C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1686C>T
  hgvsp: ENST00000404121.2:c.1686C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2973C>T
  hgvsp: ENST00000429285.2:c.2973C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18424
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5519
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Ser1009Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

12-124846746-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846746
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846746
    reference: chr 12
allele count: 2
allele frequency: 2.661414808111992e-5
allele num: 75148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2972G>A
  hgvsp: ENSP00000400281.2:p.Ser991Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3026G>A
  hgvsp: ENSP00000402808.1:p.Ser1009Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2972G>A
  hgvsp: ENSP00000384202.1:p.Ser991Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3023G>A
  hgvsp: ENSP00000348551.3:p.Ser1008Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3026G>A
  hgvsp: ENSP00000384018.1:p.Ser1009Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1685G>A
  hgvsp: ENSP00000385618.2:p.Ser562Asn
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2975G>A
  hgvsp: ENSP00000380513.1:p.Ser992Asn
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14175
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20858
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5534
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser1009Asn
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

12-124846751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846751
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846751
    reference: chr 12
allele count: 6
allele frequency: 8.024179527643298e-5
allele num: 74774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3021G>A
  hgvsp: ENST00000458234.1:c.3021G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2970G>A
  hgvsp: ENST00000397355.1:c.2970G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3021G>A
  hgvsp: ENST00000405201.1:c.3021G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2967G>A
  hgvsp: ENST00000404621.1:c.2967G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3018G>A
  hgvsp: ENST00000356219.3:c.3018G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1680G>A
  hgvsp: ENST00000404121.2:c.1680G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2967G>A
  hgvsp: ENST00000429285.2:c.2967G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18045
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5581
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19071
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro1007Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

12-124846752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846752
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846752
    reference: chr 12
allele count: 2
allele frequency: 2.671867902850883e-5
allele num: 74854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2966C>T
  hgvsp: ENSP00000384202.1:p.Pro989Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2969C>T
  hgvsp: ENSP00000380513.1:p.Pro990Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3017C>T
  hgvsp: ENSP00000348551.3:p.Pro1006Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2966C>T
  hgvsp: ENSP00000400281.2:p.Pro989Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1679C>T
  hgvsp: ENSP00000385618.2:p.Pro560Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3020C>T
  hgvsp: ENSP00000384018.1:p.Pro1007Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3020C>T
  hgvsp: ENSP00000402808.1:p.Pro1007Leu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2376
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro1007Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-124846766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846766
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846766
    reference: chr 12
allele count: 3
allele frequency: 4.176527913128219e-5
allele num: 71830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3006G>A
  hgvsp: ENST00000458234.1:c.3006G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2952G>A
  hgvsp: ENST00000429285.2:c.2952G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2955G>A
  hgvsp: ENST00000397355.1:c.2955G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1665G>A
  hgvsp: ENST00000404121.2:c.1665G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2952G>A
  hgvsp: ENST00000404621.1:c.2952G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3003G>A
  hgvsp: ENST00000356219.3:c.3003G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3006G>A
  hgvsp: ENST00000405201.1:c.3006G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13662
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10054
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18760
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro1002Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

12-124846767-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846767
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846767
    reference: chr 12
allele count: 9
allele frequency: 1.238168611049967e-4
allele num: 72688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2951C>T
  hgvsp: ENSP00000384202.1:p.Pro984Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3005C>T
  hgvsp: ENSP00000384018.1:p.Pro1002Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2954C>T
  hgvsp: ENSP00000380513.1:p.Pro985Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2951C>T
  hgvsp: ENSP00000400281.2:p.Pro984Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.3002C>T
  hgvsp: ENSP00000348551.3:p.Pro1001Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3005C>T
  hgvsp: ENSP00000402808.1:p.Pro1002Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1664C>T
  hgvsp: ENSP00000385618.2:p.Pro555Leu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10157
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13807
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13858
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro1002Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

12-124846771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846771
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846771
    reference: chr 12
allele count: 3
allele frequency: 4.121785007693999e-5
allele num: 72784
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2947C>T
  hgvsp: ENSP00000400281.2:p.Pro983Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.3001C>T
  hgvsp: ENSP00000402808.1:p.Pro1001Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2998C>T
  hgvsp: ENSP00000348551.3:p.Pro1000Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.3001C>T
  hgvsp: ENSP00000384018.1:p.Pro1001Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2947C>T
  hgvsp: ENSP00000384202.1:p.Pro983Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2950C>T
  hgvsp: ENSP00000380513.1:p.Pro984Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1660C>T
  hgvsp: ENSP00000385618.2:p.Pro554Ser
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14004
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6049
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro1001Ser
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum

12-124846773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846773
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846773
    reference: chr 12
allele count: 3
allele frequency: 4.168866901976043e-5
allele num: 71962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1658C>T
  hgvsp: ENSP00000385618.2:p.Pro553Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2999C>T
  hgvsp: ENSP00000384018.1:p.Pro1000Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2996C>T
  hgvsp: ENSP00000348551.3:p.Pro999Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2945C>T
  hgvsp: ENSP00000384202.1:p.Pro982Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2945C>T
  hgvsp: ENSP00000400281.2:p.Pro982Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2999C>T
  hgvsp: ENSP00000402808.1:p.Pro1000Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2948C>T
  hgvsp: ENSP00000380513.1:p.Pro983Leu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13788
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19774
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro1000Leu
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-124846782-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846782
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846782
    reference: chr 12
allele count: 4
allele frequency: 5.627937079663449e-5
allele num: 71074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2987C>T
  hgvsp: ENSP00000348551.3:p.Pro996Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2936C>T
  hgvsp: ENSP00000400281.2:p.Pro979Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1649C>T
  hgvsp: ENSP00000385618.2:p.Pro550Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2990C>T
  hgvsp: ENSP00000384018.1:p.Pro997Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2990C>T
  hgvsp: ENSP00000402808.1:p.Pro997Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2936C>T
  hgvsp: ENSP00000384202.1:p.Pro979Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2939C>T
  hgvsp: ENSP00000380513.1:p.Pro980Leu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10604
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro997Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

12-124846782-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846782
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846782
    reference: chr 12
allele count: 1
allele frequency: 1.406984269915862e-5
allele num: 71074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1649C>G
  hgvsp: ENSP00000385618.2:p.Pro550Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2936C>G
  hgvsp: ENSP00000400281.2:p.Pro979Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2936C>G
  hgvsp: ENSP00000384202.1:p.Pro979Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2990C>G
  hgvsp: ENSP00000402808.1:p.Pro997Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2987C>G
  hgvsp: ENSP00000348551.3:p.Pro996Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2990C>G
  hgvsp: ENSP00000384018.1:p.Pro997Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2939C>G
  hgvsp: ENSP00000380513.1:p.Pro980Arg
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro997Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

12-124846782-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846782
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846782
    reference: chr 12
allele count: 2
allele frequency: 2.813968539831725e-5
allele num: 71074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2936C>A
  hgvsp: ENSP00000384202.1:p.Pro979Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2990C>A
  hgvsp: ENSP00000384018.1:p.Pro997Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2939C>A
  hgvsp: ENSP00000380513.1:p.Pro980Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1649C>A
  hgvsp: ENSP00000385618.2:p.Pro550Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2936C>A
  hgvsp: ENSP00000400281.2:p.Pro979Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2987C>A
  hgvsp: ENSP00000348551.3:p.Pro996Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2990C>A
  hgvsp: ENSP00000402808.1:p.Pro997Gln
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13762
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14442
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro997Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

12-124846786-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846786
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846786
    reference: chr 12
allele count: 2
allele frequency: 2.811990326753276e-5
allele num: 71124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1645C>T
  hgvsp: ENSP00000385618.2:p.Pro549Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2983C>T
  hgvsp: ENSP00000348551.3:p.Pro995Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2935C>T
  hgvsp: ENSP00000380513.1:p.Pro979Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2986C>T
  hgvsp: ENSP00000384018.1:p.Pro996Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2932C>T
  hgvsp: ENSP00000384202.1:p.Pro978Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2986C>T
  hgvsp: ENSP00000402808.1:p.Pro996Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2932C>T
  hgvsp: ENSP00000400281.2:p.Pro978Ser
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2936
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro996Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

12-124846788-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846788
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846788
    reference: chr 12
allele count: 651
allele frequency: 9.164109349925393e-3
allele num: 71038
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2930C>G
  hgvsp: ENSP00000384202.1:p.Ala977Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2984C>G
  hgvsp: ENSP00000402808.1:p.Ala995Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2984C>G
  hgvsp: ENSP00000384018.1:p.Ala995Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1643C>G
  hgvsp: ENSP00000385618.2:p.Ala548Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2933C>G
  hgvsp: ENSP00000380513.1:p.Ala978Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2981C>G
  hgvsp: ENSP00000348551.3:p.Ala994Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2930C>G
  hgvsp: ENSP00000400281.2:p.Ala977Gly
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 1.75e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16172
  bin: 7.5e0
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 2.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14119
  bin: 2.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10799
  bin: 1.25e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 6003
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 21086
  bin: 2.25e1
  variant carriers: 8
hgvs: p.Ala995Gly
num of homozygotes: 23
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD

12-124846807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846807
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846807
    reference: chr 12
allele count: 5
allele frequency: 7.28268468888371e-5
allele num: 68656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2965G>A
  hgvsp: ENSP00000402808.1:p.Ala989Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2962G>A
  hgvsp: ENSP00000348551.3:p.Ala988Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2965G>A
  hgvsp: ENSP00000384018.1:p.Ala989Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2914G>A
  hgvsp: ENSP00000380513.1:p.Ala972Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1624G>A
  hgvsp: ENSP00000385618.2:p.Ala542Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2911G>A
  hgvsp: ENSP00000384202.1:p.Ala971Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2911G>A
  hgvsp: ENSP00000400281.2:p.Ala971Thr
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11334
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14382
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5861
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala989Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

12-124846808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846808
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846808
    reference: chr 12
allele count: 31
allele frequency: 4.507779555038534e-4
allele num: 68770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2961C>T
  hgvsp: ENST00000356219.3:c.2961C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2964C>T
  hgvsp: ENST00000405201.1:c.2964C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2964C>T
  hgvsp: ENST00000458234.1:c.2964C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1623C>T
  hgvsp: ENST00000404121.2:c.1623C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2910C>T
  hgvsp: ENST00000429285.2:c.2910C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2910C>T
  hgvsp: ENST00000404621.1:c.2910C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2913C>T
  hgvsp: ENST00000397355.1:c.2913C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14290
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11473
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17684
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15209
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Asp988Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

12-124846814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846814
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846814
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 67670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2904G>A
  hgvsp: ENST00000404621.1:c.2904G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2958G>A
  hgvsp: ENST00000458234.1:c.2958G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2907G>A
  hgvsp: ENST00000397355.1:c.2907G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2955G>A
  hgvsp: ENST00000356219.3:c.2955G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2958G>A
  hgvsp: ENST00000405201.1:c.2958G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2904G>A
  hgvsp: ENST00000429285.2:c.2904G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1617G>A
  hgvsp: ENST00000404121.2:c.1617G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18215
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24874
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg986Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

12-124846815-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846815
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846816
    reference: chr 12
allele count: 9
allele frequency: 1.381342665070449e-4
allele num: 65154
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2956dupC
  hgvsp: ENSP00000402808.1:p.Arg986ProfsTer84
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2902dupC
  hgvsp: ENSP00000384202.1:p.Arg968ProfsTer84
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2905dupC
  hgvsp: ENSP00000380513.1:p.Arg969ProfsTer84
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2956dupC
  hgvsp: ENSP00000384018.1:p.Arg986ProfsTer76
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1615dupC
  hgvsp: ENSP00000385618.2:p.Arg539ProfsTer84
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2902dupC
  hgvsp: ENSP00000400281.2:p.Arg968ProfsTer84
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2953dupC
  hgvsp: ENSP00000348551.3:p.Arg985ProfsTer84
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11976
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18150
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5993
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Arg986ProfsTer76
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

12-124846815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846815
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846815
    reference: chr 12
allele count: 1
allele frequency: 1.534825183411609e-5
allele num: 65154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2957G>A
  hgvsp: ENSP00000402808.1:p.Arg986Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2957G>A
  hgvsp: ENSP00000384018.1:p.Arg986Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1616G>A
  hgvsp: ENSP00000385618.2:p.Arg539Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2906G>A
  hgvsp: ENSP00000380513.1:p.Arg969Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2903G>A
  hgvsp: ENSP00000400281.2:p.Arg968Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2903G>A
  hgvsp: ENSP00000384202.1:p.Arg968Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2954G>A
  hgvsp: ENSP00000348551.3:p.Arg985Gln
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg986Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-124846816-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846816
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846816
    reference: chr 12
allele count: 4
allele frequency: 6.171506156077391e-5
allele num: 64814
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2956C>G
  hgvsp: ENSP00000384018.1:p.Arg986Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2905C>G
  hgvsp: ENSP00000380513.1:p.Arg969Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2953C>G
  hgvsp: ENSP00000348551.3:p.Arg985Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2956C>G
  hgvsp: ENSP00000402808.1:p.Arg986Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1615C>G
  hgvsp: ENSP00000385618.2:p.Arg539Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2902C>G
  hgvsp: ENSP00000384202.1:p.Arg968Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2902C>G
  hgvsp: ENSP00000400281.2:p.Arg968Gly
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11869
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24693
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6009
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg986Gly
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

12-124846816-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846816
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846816
    reference: chr 12
allele count: 3
allele frequency: 4.628629617058043e-5
allele num: 64814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2902C>A
  hgvsp: ENST00000404621.1:c.2902C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1615C>A
  hgvsp: ENST00000404121.2:c.1615C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2956C>A
  hgvsp: ENST00000458234.1:c.2956C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2953C>A
  hgvsp: ENST00000356219.3:c.2953C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2902C>A
  hgvsp: ENST00000429285.2:c.2902C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2956C>A
  hgvsp: ENST00000405201.1:c.2956C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2905C>A
  hgvsp: ENST00000397355.1:c.2905C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13034
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24693
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg986Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

12-124846818-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846818
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846818
    reference: chr 12
allele count: 2
allele frequency: 3.03692905733722e-5
allele num: 65856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2900C>G
  hgvsp: ENSP00000400281.2:p.Pro967Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2954C>G
  hgvsp: ENSP00000384018.1:p.Pro985Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2900C>G
  hgvsp: ENSP00000384202.1:p.Pro967Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2951C>G
  hgvsp: ENSP00000348551.3:p.Pro984Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2954C>G
  hgvsp: ENSP00000402808.1:p.Pro985Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2903C>G
  hgvsp: ENSP00000380513.1:p.Pro968Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1613C>G
  hgvsp: ENSP00000385618.2:p.Pro538Arg
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12651
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5814
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro985Arg
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

12-124846821-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846821
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846821
    reference: chr 12
allele count: 8
allele frequency: 1.221635158659866e-4
allele num: 65486
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2951C>A
  hgvsp: ENSP00000384018.1:p.Pro984His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2897C>A
  hgvsp: ENSP00000384202.1:p.Pro966His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2948C>A
  hgvsp: ENSP00000348551.3:p.Pro983His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2897C>A
  hgvsp: ENSP00000400281.2:p.Pro966His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2900C>A
  hgvsp: ENSP00000380513.1:p.Pro967His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2951C>A
  hgvsp: ENSP00000402808.1:p.Pro984His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1610C>A
  hgvsp: ENSP00000385618.2:p.Pro537His
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12771
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12437
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro984His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

12-124846823-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846823
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846823
    reference: chr 12
allele count: 2
allele frequency: 3.083279375944255e-5
allele num: 64866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2949G>C
  hgvsp: ENSP00000402808.1:p.Glu983Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2895G>C
  hgvsp: ENSP00000384202.1:p.Glu965Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2946G>C
  hgvsp: ENSP00000348551.3:p.Glu982Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2949G>C
  hgvsp: ENSP00000384018.1:p.Glu983Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2898G>C
  hgvsp: ENSP00000380513.1:p.Glu966Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2895G>C
  hgvsp: ENSP00000400281.2:p.Glu965Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1608G>C
  hgvsp: ENSP00000385618.2:p.Glu536Asp
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19586
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5929
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13947
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu983Asp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-124846827-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846827
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846827
    reference: chr 12
allele count: 1
allele frequency: 1.577983967682888e-5
allele num: 63372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2894A>G
  hgvsp: ENSP00000380513.1:p.His965Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2891A>G
  hgvsp: ENSP00000384202.1:p.His964Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1604A>G
  hgvsp: ENSP00000385618.2:p.His535Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2945A>G
  hgvsp: ENSP00000384018.1:p.His982Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2942A>G
  hgvsp: ENSP00000348551.3:p.His981Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2945A>G
  hgvsp: ENSP00000402808.1:p.His982Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2891A>G
  hgvsp: ENSP00000400281.2:p.His964Arg
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20183
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6095
  bin: 7.5e0
  variant carriers: 1
hgvs: p.His982Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

12-124846833-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846833
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846833
    reference: chr 12
allele count: 2
allele frequency: 3.2124385621125e-5
allele num: 62258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2939A>G
  hgvsp: ENSP00000402808.1:p.Lys980Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2885A>G
  hgvsp: ENSP00000400281.2:p.Lys962Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2888A>G
  hgvsp: ENSP00000380513.1:p.Lys963Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2885A>G
  hgvsp: ENSP00000384202.1:p.Lys962Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1598A>G
  hgvsp: ENSP00000385618.2:p.Lys533Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2939A>G
  hgvsp: ENSP00000384018.1:p.Lys980Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2936A>G
  hgvsp: ENSP00000348551.3:p.Lys979Arg
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14172
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29221
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6233
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys980Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD

12-124846833-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846833
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846833
    reference: chr 12
allele count: 232
allele frequency: 3.7264287320505e-3
allele num: 62258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2936A>C
  hgvsp: ENSP00000348551.3:p.Lys979Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2888A>C
  hgvsp: ENSP00000380513.1:p.Lys963Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2939A>C
  hgvsp: ENSP00000402808.1:p.Lys980Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2885A>C
  hgvsp: ENSP00000384202.1:p.Lys962Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1598A>C
  hgvsp: ENSP00000385618.2:p.Lys533Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2885A>C
  hgvsp: ENSP00000400281.2:p.Lys962Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2939A>C
  hgvsp: ENSP00000384018.1:p.Lys980Thr
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14172
  bin: 1.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 20619
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10394
  bin: 2.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 1.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 2.5e0
  variant carriers: 1
hgvs: p.Lys980Thr
num of homozygotes: 6
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

12-124846834-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846834
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846834
    reference: chr 12
allele count: 1
allele frequency: 1.618070612601534e-5
allele num: 61802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1597A>G
  hgvsp: ENSP00000385618.2:p.Lys533Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2887A>G
  hgvsp: ENSP00000380513.1:p.Lys963Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2884A>G
  hgvsp: ENSP00000400281.2:p.Lys962Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2938A>G
  hgvsp: ENSP00000402808.1:p.Lys980Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2884A>G
  hgvsp: ENSP00000384202.1:p.Lys962Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2938A>G
  hgvsp: ENSP00000384018.1:p.Lys980Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2935A>G
  hgvsp: ENSP00000348551.3:p.Lys979Glu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6272
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys980Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

12-124846837-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846837
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846837
    reference: chr 12
allele count: 1
allele frequency: 1.65196418541646e-5
allele num: 60534
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2881A>G
  hgvsp: ENSP00000400281.2:p.Thr961Ala
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1594A>G
  hgvsp: ENSP00000385618.2:p.Thr532Ala
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2884A>G
  hgvsp: ENSP00000380513.1:p.Thr962Ala
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2935A>G
  hgvsp: ENSP00000384018.1:p.Thr979Ala
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2935A>G
  hgvsp: ENSP00000402808.1:p.Thr979Ala
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2881A>G
  hgvsp: ENSP00000384202.1:p.Thr961Ala
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2932A>G
  hgvsp: ENSP00000348551.3:p.Thr978Ala
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9940
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr979Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

12-124846838-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846838
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846838
    reference: chr 12
allele count: 2
allele frequency: 3.3310016321908e-5
allele num: 60042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2883C>G
  hgvsp: ENST00000397355.1:c.2883C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2934C>G
  hgvsp: ENST00000458234.1:c.2934C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2880C>G
  hgvsp: ENST00000404621.1:c.2880C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2934C>G
  hgvsp: ENST00000405201.1:c.2934C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1593C>G
  hgvsp: ENST00000404121.2:c.1593C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2880C>G
  hgvsp: ENST00000429285.2:c.2880C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2931C>G
  hgvsp: ENST00000356219.3:c.2931C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15437
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6496
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
hgvs: c.2931C>G
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS

12-124846865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846865
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846865
    reference: chr 12
allele count: 1
allele frequency: 2.085505735140772e-5
allele num: 47950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1588-22C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2929-25C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2875-22C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2929-22C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2878-22C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2875-22C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2929-22C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17882
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2654
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31061
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10505
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

12-124846868-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846868
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846868
    reference: chr 12
allele count: 3
allele frequency: 6.449393756986843e-5
allele num: 46516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2929-28G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2875-25G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2875-25G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2929-25G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1588-25G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2929-25G>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2878-25G>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17663
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

12-124846871-TCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846871
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846869
    reference: chr 12
allele count: 1
allele frequency: 2.254181506694919e-5
allele num: 44362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2878-30_2878-29delTG
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1588-30_1588-29delTG
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2929-33_2929-32delTG
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2929-30_2929-29delTG
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2929-30_2929-29delTG
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2875-30_2875-29delTG
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2875-30_2875-29delTG
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17020
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: TCA
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/12-124846875-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846875
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846875
    reference: chr 12
allele count: 6
allele frequency: 1.41070252985987e-4
allele num: 42532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2875-32T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2875-32T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2929-32T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1588-32T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2878-32T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2929-32T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2929-35T>G
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23026
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16345
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26579
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13308
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

12-124846876-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846876
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846876
    reference: chr 12
allele count: 648
allele frequency: 1.60945804977398e-2
allele num: 40262
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2929-33C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1588-33C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2878-33C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2929-36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2875-33C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2929-33C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2875-33C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 1.75e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13155
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 23442
  bin: 7.5e0
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15553
  bin: 1.25e1
  variant carriers: 375
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 3712
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 2.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 9.75e1
  variant carriers: 599
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 6.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 13787
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 23952
  bin: 2.25e1
  variant carriers: 23
num of homozygotes: 25
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

12-124846879-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846879
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846879
    reference: chr 12
allele count: 2
allele frequency: 5.08130081300813e-5
allele num: 39360
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2929-36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2929-39C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2875-36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1588-36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2878-36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2929-36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2875-36C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15150
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23837
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24930
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3968
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

12-124846880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846880
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846880
    reference: chr 12
allele count: 5
allele frequency: 1.396882159021065e-4
allele num: 35794
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2929-37C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2878-37C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2875-37C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2875-37C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2929-37C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2929-40C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1588-37C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25047
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13693
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5037
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14849
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-124846888-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846888
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846888
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 32774
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2929-45T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2875-45T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2929-48T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2929-45T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2875-45T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1588-45T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2878-45T>G
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26655
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13953
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5731
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15358
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6033
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

12-124846889-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846889
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846889
    reference: chr 12
allele count: 2
allele frequency: 6.207709975789931e-5
allele num: 32218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1588-46T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2929-46T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2929-46T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2875-46T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2878-46T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2929-49T>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2875-46T>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13956
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18209
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

12-124846893-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846893
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846893
    reference: chr 12
allele count: 2
allele frequency: 6.695681285570806e-5
allele num: 29870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1588-50T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2929-53T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2929-50T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2878-50T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2929-50T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2875-50T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2875-50T>C
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14018
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11117
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14905
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14939
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-124846895-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124846895
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124846895
    reference: chr 12
allele count: 1
allele frequency: 3.56582513193553e-5
allele num: 28044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1588-52T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2929-52T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2875-52T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2929-55T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2929-52T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2875-52T>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2878-52T>G
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14043
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2733
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14236
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11912
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11655
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

12-124848175-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848175
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848175
    reference: chr 12
allele count: 1
allele frequency: 9.401854045617796e-6
allele num: 106362
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2928+50T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2928+50T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2928+50T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2874+50T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1587+50T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2874+50T>C
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2877+50T>C
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9957
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

12-124848183-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848183
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848183
    reference: chr 12
allele count: 1
allele frequency: 9.404152873909119e-6
allele num: 106336
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2928+42C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2874+42C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2877+42C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1587+42C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2928+42C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2928+42C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2874+42C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7627
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3669
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 9954
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3262
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

12-124848189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848189
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848189
    reference: chr 12
allele count: 1
allele frequency: 9.40379913485048e-6
allele num: 106340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1587+36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2874+36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2874+36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2877+36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2928+36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2928+36C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2928+36C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19938
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

12-124848190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848190
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848190
    reference: chr 12
allele count: 9
allele frequency: 8.466603951081844e-5
allele num: 106300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2877+35C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2928+35C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2874+35C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1587+35C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2928+35C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2928+35C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2874+35C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

12-124848197-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848197
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848195
    reference: chr 12
allele count: 1
allele frequency: 9.40822278671559e-6
allele num: 106290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2874+26_2874+27delCA
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2874+26_2874+27delCA
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2928+26_2928+27delCA
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2928+26_2928+27delCA
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2877+26_2877+27delCA
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1587+26_1587+27delCA
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2928+26_2928+27delCA
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19919
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: CTG
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

12-124848208-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848208
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848208
    reference: chr 12
allele count: 737
allele frequency: 6.931642902825327e-3
allele num: 106324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2928+17A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2874+17A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2874+17A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1587+17A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2928+17A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2928+17A>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2877+17A>G
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 9.75e1
  variant carriers: 562
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 13640
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14030
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8070
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3255
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4170
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 23
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

12-124848209-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848209
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848209
    reference: chr 12
allele count: 1
allele frequency: 9.404506639581688e-6
allele num: 106332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2874+16C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2928+16C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2877+16C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2928+16C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2874+16C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1587+16C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2928+16C>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3979
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9427
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-124848213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848213
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848213
    reference: chr 12
allele count: 2
allele frequency: 1.880582980724025e-5
allele num: 106350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2874+12C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2928+12C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2928+12C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2928+12C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2877+12C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2874+12C>T
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1587+12C>T
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9425
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

12-124848213-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848213
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848213
    reference: chr 12
allele count: 3
allele frequency: 2.820874471086037e-5
allele num: 106350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1587+12C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2874+12C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2928+12C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2928+12C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2928+12C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2874+12C>G
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2877+12C>G
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3881
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

12-124848213-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848213
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848213
    reference: chr 12
allele count: 1
allele frequency: 9.402914903620123e-6
allele num: 106350
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2928+12C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1587+12C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2874+12C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2928+12C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2928+12C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2874+12C>A
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2877+12C>A
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3881
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

12-124848225-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848225
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848225
    reference: chr 12
allele count: 29
allele frequency: 2.727820001505004e-4
allele num: 106312
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2928C>T
  hgvsp: ENST00000405201.1:c.2928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1587C>T
  hgvsp: ENST00000404121.2:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2928C>T
  hgvsp: ENST00000458234.1:c.2928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2877C>T
  hgvsp: ENST00000397355.1:c.2877C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2928C>T
  hgvsp: ENST00000356219.3:c.2928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2874C>T
  hgvsp: ENST00000429285.2:c.2874C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2874C>T
  hgvsp: ENST00000404621.1:c.2874C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13823
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7643
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
hgvs: c.2928C>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-124848228-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848228
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848228
    reference: chr 12
allele count: 1
allele frequency: 9.395317373820887e-6
allele num: 106436
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2874C>G
  hgvsp: ENST00000397355.1:c.2874C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2925C>G
  hgvsp: ENST00000458234.1:c.2925C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2871C>G
  hgvsp: ENST00000404621.1:c.2871C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2925C>G
  hgvsp: ENST00000405201.1:c.2925C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1584C>G
  hgvsp: ENST00000404121.2:c.1584C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2925C>G
  hgvsp: ENST00000356219.3:c.2925C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2871C>G
  hgvsp: ENST00000429285.2:c.2871C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7674
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro975Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

12-124848229-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848229
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848229
    reference: chr 12
allele count: 3
allele frequency: 2.814470129090363e-5
allele num: 106592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2870C>G
  hgvsp: ENSP00000400281.2:p.Pro957Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2924C>G
  hgvsp: ENSP00000348551.3:p.Pro975Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2870C>G
  hgvsp: ENSP00000384202.1:p.Pro957Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2873C>G
  hgvsp: ENSP00000380513.1:p.Pro958Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1583C>G
  hgvsp: ENSP00000385618.2:p.Pro528Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2924C>G
  hgvsp: ENSP00000402808.1:p.Pro975Arg
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2924C>G
  hgvsp: ENSP00000384018.1:p.Pro975Arg
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3531
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20569
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro975Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-124848229-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848229
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848229
    reference: chr 12
allele count: 6
allele frequency: 5.628940258180726e-5
allele num: 106592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2870C>A
  hgvsp: ENSP00000384202.1:p.Pro957His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2870C>A
  hgvsp: ENSP00000400281.2:p.Pro957His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2924C>A
  hgvsp: ENSP00000384018.1:p.Pro975His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2873C>A
  hgvsp: ENSP00000380513.1:p.Pro958His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1583C>A
  hgvsp: ENSP00000385618.2:p.Pro528His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2924C>A
  hgvsp: ENSP00000348551.3:p.Pro975His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2924C>A
  hgvsp: ENSP00000402808.1:p.Pro975His
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3531
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4197
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro975His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

12-124848231-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848231
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848231
    reference: chr 12
allele count: 1
allele frequency: 9.374179759271064e-6
allele num: 106676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2868C>A
  hgvsp: ENST00000404621.1:c.2868C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2922C>A
  hgvsp: ENST00000458234.1:c.2922C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2868C>A
  hgvsp: ENST00000429285.2:c.2868C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2871C>A
  hgvsp: ENST00000397355.1:c.2871C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2922C>A
  hgvsp: ENST00000405201.1:c.2922C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1581C>A
  hgvsp: ENST00000404121.2:c.1581C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2922C>A
  hgvsp: ENST00000356219.3:c.2922C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9366
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7690
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2503
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro974Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

12-124848238-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848238
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848238
    reference: chr 12
allele count: 8
allele frequency: 7.515406583496167e-5
allele num: 106448
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2861C>G
  hgvsp: ENSP00000400281.2:p.Ala954Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2861C>G
  hgvsp: ENSP00000384202.1:p.Ala954Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1574C>G
  hgvsp: ENSP00000385618.2:p.Ala525Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2915C>G
  hgvsp: ENSP00000348551.3:p.Ala972Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2915C>G
  hgvsp: ENSP00000384018.1:p.Ala972Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2915C>G
  hgvsp: ENSP00000402808.1:p.Ala972Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2864C>G
  hgvsp: ENSP00000380513.1:p.Ala955Gly
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13985
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7624
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Ala972Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

12-124848243-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848243
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848243
    reference: chr 12
allele count: 25
allele frequency: 2.334267040149393e-4
allele num: 107100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2859G>A
  hgvsp: ENST00000397355.1:c.2859G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2910G>A
  hgvsp: ENST00000356219.3:c.2910G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2910G>A
  hgvsp: ENST00000405201.1:c.2910G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2856G>A
  hgvsp: ENST00000404621.1:c.2856G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2910G>A
  hgvsp: ENST00000458234.1:c.2910G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1569G>A
  hgvsp: ENST00000404121.2:c.1569G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2856G>A
  hgvsp: ENST00000429285.2:c.2856G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9224
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 7727
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Ala970Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

12-124848244-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848244
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848244
    reference: chr 12
allele count: 1
allele frequency: 9.329054407045302e-6
allele num: 107192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2855C>T
  hgvsp: ENSP00000400281.2:p.Ala952Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2909C>T
  hgvsp: ENSP00000402808.1:p.Ala970Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2909C>T
  hgvsp: ENSP00000384018.1:p.Ala970Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2909C>T
  hgvsp: ENSP00000348551.3:p.Ala970Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2855C>T
  hgvsp: ENSP00000384202.1:p.Ala952Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2858C>T
  hgvsp: ENSP00000380513.1:p.Ala953Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1568C>T
  hgvsp: ENSP00000385618.2:p.Ala523Val
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala970Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

12-124848263-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848263
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848263
    reference: chr 12
allele count: 4
allele frequency: 3.714779249243114e-5
allele num: 107678
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2890A>C
  hgvsp: ENSP00000384018.1:p.Lys964Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2890A>C
  hgvsp: ENSP00000348551.3:p.Lys964Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2839A>C
  hgvsp: ENSP00000380513.1:p.Lys947Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2836A>C
  hgvsp: ENSP00000384202.1:p.Lys946Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1549A>C
  hgvsp: ENSP00000385618.2:p.Lys517Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2836A>C
  hgvsp: ENSP00000400281.2:p.Lys946Gln
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2890A>C
  hgvsp: ENSP00000402808.1:p.Lys964Gln
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9204
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys964Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

12-124848275-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124848275
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124848275
    reference: chr 12
allele count: 1
allele frequency: 9.30925339787749e-6
allele num: 107420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.2824C>T
  hgvsp: ENSP00000384202.1:p.Pro942Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.2878C>T
  hgvsp: ENSP00000384018.1:p.Pro960Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.2878C>T
  hgvsp: ENSP00000348551.3:p.Pro960Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.2824C>T
  hgvsp: ENSP00000400281.2:p.Pro942Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.2827C>T
  hgvsp: ENSP00000380513.1:p.Pro943Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000402808
  ensembl transcript: ENST00000458234
  gene symbol: NCOR2
  hgvsc: ENST00000458234.1:c.2878C>T
  hgvsp: ENSP00000402808.1:p.Pro960Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.1537C>T
  hgvsp: ENSP00000385618.2:p.Pro513Ser
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro960Ser
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 19603
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 662
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 9.75e1
variant carriers: 94

GenotypeQuality
all individuals: 589
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 106
bin: 8.25e1
variant carriers: 2

African
type: Population
allele count: 10
allele frequency: 1.996007984031936e-3
allele num: 5010
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2514
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 1.154401154401154e-3
allele num: 6930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5912
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.5e-3
allele num: 400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 83
allele frequency: 2.146588734288522e-3
allele num: 38666
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 7.99888e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

FS
type: SiteQuality
SIO_000300: 3.287e0

QD
type: SiteQuality
SIO_000300: 1.185e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

GenotypeQuality
all individuals: 1255
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 18812
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.820874471086037e-4
allele num: 7090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.033553634977122e-4
allele num: 39340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.164596273291925e-3
allele num: 2576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 8.347e0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

DP
type: SiteQuality
SIO_000300: 8.13664e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

GenotypeQuality
all individuals: 499
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17316
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20787
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.340933564305445e-5
allele num: 42718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.69385e5

MQRankSum
type: SiteQuality
SIO_000300: 2.23e0

VQSLOD
type: SiteQuality
SIO_000300: -1.528e0

QD
type: SiteQuality
SIO_000300: 1.535e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

MQ
type: SiteQuality
SIO_000300: 5.752e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeQuality
all individuals: 17284
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20825
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.656577415599534e-5
allele num: 42950
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7844
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.69762e5

VQSLOD
type: SiteQuality
SIO_000300: -2.283e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

QD
type: SiteQuality
SIO_000300: 7.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

FS
type: SiteQuality
SIO_000300: 5.033e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

GenotypeQuality
all individuals: 5289
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2052
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 644
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20566
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17058
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 2.096143096702068e-4
allele num: 42936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2916
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

FS
type: SiteQuality
SIO_000300: 1.663e0

QD
type: SiteQuality
SIO_000300: 1.265e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

DP
type: SiteQuality
SIO_000300: 8.76194e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.38e-1

GenotypeQuality
all individuals: 1336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 813
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20140
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5478
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.901863826550019e-4
allele num: 5258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.325473233803079e-5
allele num: 43002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.616e0

FS
type: SiteQuality
SIO_000300: 1.1222e1

QD
type: SiteQuality
SIO_000300: 7.61e0

DP
type: SiteQuality
SIO_000300: 8.78372e5

BaseQRankSum
type: SiteQuality
SIO_000300: -6.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

GenotypeQuality
all individuals: 317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5323
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.222024708914763e-5
allele num: 45004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.326e1

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: -1.373e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.023e0

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.27e-1

FS
type: SiteQuality
SIO_000300: 4.216e0

DP
type: SiteQuality
SIO_000300: 8.87603e5

GenotypeQuality
all individuals: 1133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 105
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.21690165824244e-5
allele num: 45108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3132
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.36e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 3.1e-2

QD
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DP
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SIO_000300: 8.87458e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.261e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3132
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.21690165824244e-5
allele num: 45108
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.36e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
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MQ
type: SiteQuality
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QD
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MQRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -5.261e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44836
num of homozygotes: 0

DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.034e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
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SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.710000000000001e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.218180204959851e-5
allele num: 45082
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3112
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 1.387e1

FS
type: SiteQuality
SIO_000300: 8.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.025e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

DP
type: SiteQuality
SIO_000300: 8.85312e5

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3142
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.802451333813987e-4
allele num: 5548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.481894150417827e-4
allele num: 5744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

QD
type: SiteQuality
SIO_000300: 1.239e1

DP
type: SiteQuality
SIO_000300: 8.8573e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
type: SiteQuality
SIO_000300: 1.514e0

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.654245408570669e-5
allele num: 45084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.221597849987784e-4
allele num: 8186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5746
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

DP
type: SiteQuality
SIO_000300: 8.88026e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

FS
type: SiteQuality
SIO_000300: 1.629e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.411894467484338e-5
allele num: 45332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3174
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
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DP
type: SiteQuality
SIO_000300: 8.89575e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 3
allele frequency: 5.405405405405405e-4
allele num: 5550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.136752136752137e-3
allele num: 468
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.43675407072186e-5
allele num: 45078
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.346e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.84711e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.213956783563585e-5
allele num: 45168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
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South Asian
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allele frequency: 1.799856011519078e-4
allele num: 5556
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -1.563e0

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.790189760114572e-4
allele num: 5586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.306485838176954e-5
allele num: 43356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.269680040629761e-4
allele num: 7876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2976
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.262e0

DP
type: SiteQuality
SIO_000300: 8.46967e5

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.844e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.25e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3036
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.567889620570712e-4
allele num: 6378
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.511300853842291e-4
allele num: 7964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.369112814895947e-4
allele num: 43824
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.903e1

MQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

FS
type: SiteQuality
SIO_000300: 4.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.7e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

DP
type: SiteQuality
SIO_000300: 8.42284e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.693366708385482e-4
allele num: 6392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43878
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7984
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5390
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1

VQSLOD
type: SiteQuality
SIO_000300: -2.436e0

QD
type: SiteQuality
SIO_000300: 3.29e0

FS
type: SiteQuality
SIO_000300: 7.035e0

DP
type: SiteQuality
SIO_000300: 8.37552e5

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5650
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.272727272727273e-3
allele num: 440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.269357705001269e-4
allele num: 7878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.305528657721215e-5
allele num: 43374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2964
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.022e0

FS
type: SiteQuality
SIO_000300: 5.846e0

DP
type: SiteQuality
SIO_000300: 8.3214e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

QD
type: SiteQuality
SIO_000300: 1.244e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.38e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 1513
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5608
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.381620931716656e-4
allele num: 6268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5250
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.59e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.743e-1

QD
type: SiteQuality
SIO_000300: 9.06e0

DP
type: SiteQuality
SIO_000300: 8.24994e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.903e0

FS
type: SiteQuality
SIO_000300: 1.633e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

GenotypeQuality
all individuals: 1100
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variant carriers: 0

GenotypeQuality
all individuals: 3048
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.331219694143976e-5
allele num: 42896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.59e-2

DP
type: SiteQuality
SIO_000300: 8.24994e5

VQSLOD
type: SiteQuality
SIO_000300: -2.743e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.903e0

QD
type: SiteQuality
SIO_000300: 9.06e0

FS
type: SiteQuality
SIO_000300: 1.633e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.23e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.331219694143976e-5
allele num: 42896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5608
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South Asian
type: Population
allele count: 1
allele frequency: 1.904761904761905e-4
allele num: 5250
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.633e0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.59e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.743e-1

DP
type: SiteQuality
SIO_000300: 8.24994e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.602564102564103e-4
allele num: 6240
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African
type: Population
allele count: 1
allele frequency: 1.76678445229682e-4
allele num: 5660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5248
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42952
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.213e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.468e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.21186e5

QD
type: SiteQuality
SIO_000300: 8.130000000000001e0

GenotypeQuality
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variant carriers: 572

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 3.736048195021716e-4
allele num: 42826
num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 4.018667358050298e-3
allele num: 7714
num of homozygotes: 0

East Asian
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allele num: 6210
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2822
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African
type: Population
allele count: 603
allele frequency: 1.039655172413793e-1
allele num: 5800
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South Asian
type: Population
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allele num: 5232
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Other
type: Population
allele count: 1
allele frequency: 2.304147465437788e-3
allele num: 434
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.45e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5614
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European (Finnish)
type: Population
allele count: 1
allele frequency: 3.652300949598247e-4
allele num: 2738
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East Asian
type: Population
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allele num: 6012
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European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.607070804111827e-5
allele num: 41636
num of homozygotes: 0

Latino
type: Population
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Other
type: Population
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allele num: 424
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DP
type: SiteQuality
SIO_000300: 8.11134e5

MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 4.295e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 23883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2718
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.379310344827586e-4
allele num: 7250
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 5.252525252525253e-3
allele num: 4950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.587268107952639e-5
allele num: 41722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2744
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 8.08811e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

QD
type: SiteQuality
SIO_000300: 1.016e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.499e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
all individuals: 2429
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4820
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.794999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 7.14e0

DP
type: SiteQuality
SIO_000300: 7.98007e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 1.25e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 2.275485436893204e-4
allele num: 39552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

DP
type: SiteQuality
SIO_000300: 8.01808e5

QD
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
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variant carriers: 0

GenotypeQuality
all individuals: 178
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2693
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 5993
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13097
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5434
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.15610176800345e-4
allele num: 4638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

QD
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

DP
type: SiteQuality
SIO_000300: 8.01808e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

GenotypeQuality
all individuals: 2202
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
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variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
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variant carriers: 0

GenotypeQuality
all individuals: 611
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variant carriers: 0

GenotypeQuality
all individuals: 2621
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variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 3

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.748863238894718e-4
allele num: 5718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 7.722007722007722e-4
allele num: 2590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39312
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.1767522855899e-4
allele num: 4594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.03713e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.64e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.288999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

QD
type: SiteQuality
SIO_000300: 7.02e0

GenotypeQuality
all individuals: 1106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 373
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variant carriers: 0

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 13912
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6009
bin: 7.5e0
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GenotypeQuality
all individuals: 1057
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
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variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.843657817109145e-4
allele num: 5424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.497726477789437e-4
allele num: 5718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39312
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

DP
type: SiteQuality
SIO_000300: 8.03713e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.288999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.64e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.02e0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26103
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variant carriers: 0

GenotypeQuality
all individuals: 13294
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 471
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GenotypeQuality
all individuals: 909
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variant carriers: 0

GenotypeQuality
all individuals: 536
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.506265664160401e-5
allele num: 39900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.124044180118947e-4
allele num: 4708
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.31e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 7.79798e5

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5853
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 263
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GenotypeQuality
all individuals: 96
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variant carriers: 8

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2189
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variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6832
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.386481802426343e-3
allele num: 5770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.1801e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.531e0

DP
type: SiteQuality
SIO_000300: 7.77052e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 250
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 187
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variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 6.75e1
variant carriers: 1

East Asian
type: Population
allele count: 2
allele frequency: 3.50140056022409e-4
allele num: 5712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.099e0

DP
type: SiteQuality
SIO_000300: 7.70427e5

MQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

QD
type: SiteQuality
SIO_000300: 9.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

GenotypeQuality
all individuals: 527
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 524
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variant carriers: 0

GenotypeQuality
all individuals: 28176
bin: 2.25e1
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GenotypeQuality
all individuals: 12180
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GenotypeQuality
all individuals: 2703
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.872659176029963e-4
allele num: 5340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.47037e5

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.076e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.24e0

VQSLOD
type: SiteQuality
SIO_000300: -3.299e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.211e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 11872
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2502
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.614022406938923e-4
allele num: 5534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.31192e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.835e0

QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 8

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 8

GenotypeQuality
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bin: 9.75e1
variant carriers: 204

GenotypeQuality
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bin: 9.25e1
variant carriers: 5

GenotypeQuality
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bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 3.172756596689757e-4
allele num: 37822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2502
num of homozygotes: 0

East Asian
type: Population
allele count: 219
allele frequency: 3.95735453559812e-2
allele num: 5534
num of homozygotes: 6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4310
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.538071065989848e-3
allele num: 394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.835e0

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 1.275e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

DP
type: SiteQuality
SIO_000300: 7.31192e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 522
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.325581395348837e-4
allele num: 4300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.266e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.731e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.24536e5

QD
type: SiteQuality
SIO_000300: 3.93e0

GenotypeQuality
all individuals: 694
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 908
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 94
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variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4196
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.601024655779699e-4
allele num: 6246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36854
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.801e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

DP
type: SiteQuality
SIO_000300: 7.05605e5

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.43e-2

FS
type: SiteQuality
SIO_000300: 4.868e0

VQSLOD
type: SiteQuality
SIO_000300: -2.144e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

QD
type: SiteQuality
SIO_000300: 4.67e0

GenotypeQuality
all individuals: 92
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1030
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 95
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variant carriers: 2

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.814636494944632e-4
allele num: 4154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5216
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.073e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
SIO_000300: 1.36e1

DP
type: SiteQuality
SIO_000300: 6.99526e5

FS
type: SiteQuality
SIO_000300: 4.993e0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 94
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variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 2.376425855513308e-4
allele num: 4208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3042
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.55768e5

QD
type: SiteQuality
SIO_000300: 7.94e0

MQRankSum
type: SiteQuality
SIO_000300: -2.001e0

FS
type: SiteQuality
SIO_000300: 3.256e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.903e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 83
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 6.684491978609625e-4
allele num: 4488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4234
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.639e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.47e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.031e0

DP
type: SiteQuality
SIO_000300: 5.43147e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1967
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GenotypeQuality
all individuals: 82
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27462
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.65764447695684e-4
allele num: 2734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.63e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 5.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 5.2378e5

MQ
type: SiteQuality
SIO_000300: 6.024e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 235
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GenotypeQuality
all individuals: 183
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1658
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 2.311248073959939e-3
allele num: 2596
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.447e0

MQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

FS
type: SiteQuality
SIO_000300: 1.846e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 5.11083e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

QD
type: SiteQuality
SIO_000300: 1.437e1

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 13

GenotypeQuality
all individuals: 1702
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3639
bin: 1.75e1
variant carriers: 27

GenotypeQuality
all individuals: 413
bin: 6.75e1
variant carriers: 23

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 45

GenotypeQuality
all individuals: 230
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1005
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 28

GenotypeQuality
all individuals: 140
bin: 7.75e1
variant carriers: 18

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 23

East Asian
type: Population
allele count: 523
allele frequency: 1.497709049255441e-1
allele num: 3492
num of homozygotes: 24

South Asian
type: Population
allele count: 47
allele frequency: 1.918367346938776e-2
allele num: 2450
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 3.588802934843289e-4
allele num: 25078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

Latino
type: Population
allele count: 64
allele frequency: 1.723209477652127e-2
allele num: 3714
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 1.322751322751323e-3
allele num: 3780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.43e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.01393e5

VQSLOD
type: SiteQuality
SIO_000300: 6.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

GenotypeQuality
all individuals: 2725
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14439
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.042037186742118e-5
allele num: 24740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1490
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.213367609254498e-4
allele num: 3112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2382
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.058e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.07e-2

FS
type: SiteQuality
SIO_000300: 3.066e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e-1

DP
type: SiteQuality
SIO_000300: 4.93815e5

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21054
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 367
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5084
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 2.204391147165153e-4
allele num: 22682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.78115e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.27e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.228e0

FS
type: SiteQuality
SIO_000300: 7.862e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 1.193e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18959
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 4.64347e5

FS
type: SiteQuality
SIO_000300: 3.332e0

VQSLOD
type: SiteQuality
SIO_000300: -7.446e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.48e-2

QD
type: SiteQuality
SIO_000300: 6.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 106
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15322
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2819
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2604
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6235
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.742790335151988e-5
allele num: 20528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1186
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

DP
type: SiteQuality
SIO_000300: 4.62968e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.51e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.73e-2

GenotypeQuality
all individuals: 6825
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2599
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2781
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8820
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1060
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.227888960619754e-4
allele num: 3098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.241090146750524e-5
allele num: 19080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

DP
type: SiteQuality
SIO_000300: 4.60117e5

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.68e-2

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6875
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.565449688334817e-5
allele num: 17968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.616e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.88e-2

QD
type: SiteQuality
SIO_000300: 5.22e0

DP
type: SiteQuality
SIO_000300: 4.608e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.309e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.671e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

GenotypeQuality
all individuals: 571
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7632
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.194743130227001e-4
allele num: 8370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8774
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.089e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

DP
type: SiteQuality
SIO_000300: 2.003012e6

FS
type: SiteQuality
SIO_000300: 1.244e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

QD
type: SiteQuality
SIO_000300: 1.489e1

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2904
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4206
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.62813415825464e-5
allele num: 61420
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

FS
type: SiteQuality
SIO_000300: 2.088e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.509e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

DP
type: SiteQuality
SIO_000300: 2.002855e6

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

QD
type: SiteQuality
SIO_000300: 1.045e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7636
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4199
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9953
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8750
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.110617503331852e-4
allele num: 9004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.773e0

FS
type: SiteQuality
SIO_000300: 6.74e-1

DP
type: SiteQuality
SIO_000300: 2.003073e6

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.716e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

QD
type: SiteQuality
SIO_000300: 1.088e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.626970227670753e-4
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.319261213720317e-3
allele num: 758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.1435877390143e-5
allele num: 61398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.04e-1

FS
type: SiteQuality
SIO_000300: 5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.02e-1

QD
type: SiteQuality
SIO_000300: 1.226e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.356e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 2.002797e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.755034144633164e-5
allele num: 11422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8732
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 5.187e0

MQ
type: SiteQuality
SIO_000300: 6.037e1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e0

QD
type: SiteQuality
SIO_000300: 1.803e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

DP
type: SiteQuality
SIO_000300: 2.001803e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 715

GenotypeQuality
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variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.931882594390331e-4
allele num: 61394
num of homozygotes: 0

Latino
type: Population
allele count: 35
allele frequency: 3.064798598949212e-3
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 682
allele frequency: 7.79072424034727e-2
allele num: 8754
num of homozygotes: 23

South Asian
type: Population
allele count: 1
allele frequency: 1.108647450110865e-4
allele num: 9020
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.319261213720317e-3
allele num: 758
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.87e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

DP
type: SiteQuality
SIO_000300: 2.010584e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.1936022917164e-4
allele num: 8378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.184e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.017e0

DP
type: SiteQuality
SIO_000300: 1.902188e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e0

FS
type: SiteQuality
SIO_000300: 6.027e0

MQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
all individuals: 285
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2509
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variant carriers: 0

GenotypeQuality
all individuals: 4214
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.628346251546929e-5
allele num: 61412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9022
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.142074006395614e-4
allele num: 8756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.41e1

DP
type: SiteQuality
SIO_000300: 1.90265e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.384e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.885038754640787e-5
allele num: 61412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.41e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 1.90265e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61412
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.142074006395614e-4
allele num: 8756
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.90265e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.384e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 28

Latino
type: Population
allele count: 1
allele frequency: 8.751969193068441e-5
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.517842594101353e-5
allele num: 61370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

African
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allele count: 24
allele frequency: 2.751031636863824e-3
allele num: 8724
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8384
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South Asian
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allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.312e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.902336e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.733e0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61444
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9060
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Latino
type: Population
allele count: 1
allele frequency: 8.751969193068441e-5
allele num: 11426
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.862e1

DP
type: SiteQuality
SIO_000300: 1.901436e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.644e0

QD
type: SiteQuality
SIO_000300: 1.201e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 245
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7683
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.873611020859055e-5
allele num: 61556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

FS
type: SiteQuality
SIO_000300: 5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.49e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

DP
type: SiteQuality
SIO_000300: 1.901953e6

GenotypeQuality
all individuals: 2920
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9372
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7683
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.274795268425842e-4
allele num: 8792
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.193032689095681e-4
allele num: 8382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.873611020859055e-5
allele num: 61556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9066
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

DP
type: SiteQuality
SIO_000300: 1.901953e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 5.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

GenotypeQuality
all individuals: 302
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2942
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20616
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.623271216154795e-5
allele num: 61604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.472e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-1

FS
type: SiteQuality
SIO_000300: 2.242e0

DP
type: SiteQuality
SIO_000300: 1.901447e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 250
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 354
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 493
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 20482
bin: 6.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.30890052356021e-3
allele num: 764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.13869278068777e-4
allele num: 61474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.73e-1

FS
type: SiteQuality
SIO_000300: 1.31276e2

DP
type: SiteQuality
SIO_000300: 1.904292e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.047e1

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.803e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.32e-1

GenotypeQuality
all individuals: 3053
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3258
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.519276534983341e-4
allele num: 8404
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.123595505617978e-4
allele num: 8900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.750437521876094e-5
allele num: 11428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.425300737291424e-4
allele num: 61848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

QD
type: SiteQuality
SIO_000300: 1.313e1

DP
type: SiteQuality
SIO_000300: 1.895175e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

GenotypeQuality
all individuals: 7741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3459
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2488
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.615300122762809e-5
allele num: 61908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.54e-1

QD
type: SiteQuality
SIO_000300: 1.13e1

MQRankSum
type: SiteQuality
SIO_000300: -5.96e-1

FS
type: SiteQuality
SIO_000300: 1.8361e1

VQSLOD
type: SiteQuality
SIO_000300: -2.858e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.603e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.66e-1

DP
type: SiteQuality
SIO_000300: 1.893032e6

GenotypeQuality
all individuals: 2407
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2900
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GenotypeQuality
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GenotypeQuality
all individuals: 21474
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variant carriers: 0

GenotypeQuality
all individuals: 3260
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.751722499406035e-4
allele num: 8418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

DP
type: SiteQuality
SIO_000300: 1.90039e6

QD
type: SiteQuality
SIO_000300: 1.427e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e0