13-50080827-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080827
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080827
    reference: chr 13
allele count: 2
allele frequency: 1.648152421135907e-5
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.34G>T
  hgvsp: ENSP00000417539.1:p.Asp12Tyr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.331G>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.34G>T
  hgvsp: ENSP00000405227.1:p.Asp12Tyr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.151G>T
  hgvsp: ENSP00000367570.3:p.Asp51Tyr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6368G>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.34G>T
  hgvsp: ENSP00000350209.3:p.Asp12Tyr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.543G>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6368G>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.34G>T
  hgvsp: ENSP00000420129.1:p.Asp12Tyr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6368G>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.34G>T
  hgvsp: ENSP00000418630.1:p.Asp12Tyr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6368G>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6368G>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.183G>T
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp51Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

13-50080832-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080832
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080832
    reference: chr 13
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.39C>T
  hgvsp: ENST00000442195.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.39C>T
  hgvsp: ENST00000465045.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.156C>T
  hgvsp: ENST00000378319.3:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.39C>T
  hgvsp: ENST00000488958.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.39C>T
  hgvsp: ENST00000485919.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.336C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.548C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.39C>T
  hgvsp: ENST00000357596.3:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.188C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6363C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6363C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6363C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6363C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6363C>T
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val52Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

13-50080833-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080833
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080833
    reference: chr 13
allele count: 4
allele frequency: 3.296902560044838e-5
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.189G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.40G>A
  hgvsp: ENSP00000405227.1:p.Glu14Lys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.40G>A
  hgvsp: ENSP00000350209.3:p.Glu14Lys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.157G>A
  hgvsp: ENSP00000367570.3:p.Glu53Lys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6362G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.40G>A
  hgvsp: ENSP00000420129.1:p.Glu14Lys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6362G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6362G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.549G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.40G>A
  hgvsp: ENSP00000417539.1:p.Glu14Lys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.40G>A
  hgvsp: ENSP00000418630.1:p.Glu14Lys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6362G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6362G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.337G>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu53Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

13-50080836-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080836
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080836
    reference: chr 13
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6359T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.43T>C
  hgvsp: ENSP00000418630.1:p.Tyr15His
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.340T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.43T>C
  hgvsp: ENSP00000417539.1:p.Tyr15His
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.552T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.43T>C
  hgvsp: ENSP00000405227.1:p.Tyr15His
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.160T>C
  hgvsp: ENSP00000367570.3:p.Tyr54His
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6359T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6359T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.192T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.43T>C
  hgvsp: ENSP00000350209.3:p.Tyr15His
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.43T>C
  hgvsp: ENSP00000420129.1:p.Tyr15His
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6359T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6359T>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr54His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

13-50080845-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080845
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080845
    reference: chr 13
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.201C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.52C>G
  hgvsp: ENSP00000350209.3:p.Leu18Val
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6350C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.52C>G
  hgvsp: ENSP00000405227.1:p.Leu18Val
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.52C>G
  hgvsp: ENSP00000417539.1:p.Leu18Val
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.52C>G
  hgvsp: ENSP00000418630.1:p.Leu18Val
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6350C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6350C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.169C>G
  hgvsp: ENSP00000367570.3:p.Leu57Val
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6350C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.349C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.561C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6350C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.52C>G
  hgvsp: ENSP00000420129.1:p.Leu18Val
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu57Val
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

13-50080845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080845
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080845
    reference: chr 13
allele count: 5
allele frequency: 4.123235255310727e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6350C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.52C>T
  hgvsp: ENST00000465045.1:c.52C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.201C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.52C>T
  hgvsp: ENST00000488958.1:c.52C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.561C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.52C>T
  hgvsp: ENST00000442195.1:c.52C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6350C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.169C>T
  hgvsp: ENST00000378319.3:c.169C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.52C>T
  hgvsp: ENST00000485919.1:c.52C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.52C>T
  hgvsp: ENST00000357596.3:c.52C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6350C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6350C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6350C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.349C>T
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu57Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

13-50080846-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080846
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080845
    reference: chr 13
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.54delA
  hgvsp: ENSP00000418630.1:p.Tyr19ThrfsTer8
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6348delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.563delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.171delA
  hgvsp: ENSP00000367570.3:p.Tyr58ThrfsTer8
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6348delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6348delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.351delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.203delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.54delA
  hgvsp: ENSP00000350209.3:p.Tyr19ThrfsTer8
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.54delA
  hgvsp: ENSP00000405227.1:p.Tyr19ThrfsTer8
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.54delA
  hgvsp: ENSP00000420129.1:p.Tyr19ThrfsTer8
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6348delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.54delA
  hgvsp: ENSP00000417539.1:p.Tyr19ThrfsTer8
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6348delA
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr58ThrfsTer8
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: TA
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/13-50080847-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080847
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080847
    reference: chr 13
allele count: 8
allele frequency: 6.605019815059445e-5
allele num: 121120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.563A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6348A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.54A>C
  hgvsp: ENST00000488958.1:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6348A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6348A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.54A>C
  hgvsp: ENST00000442195.1:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.203A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.54A>C
  hgvsp: ENST00000357596.3:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.351A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.171A>C
  hgvsp: ENST00000378319.3:c.171A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6348A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.54A>C
  hgvsp: ENST00000485919.1:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.54A>C
  hgvsp: ENST00000465045.1:c.54A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6348A>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu57Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

13-50080847-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080847
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080847
    reference: chr 13
allele count: 85416
allele frequency: 7.052179656538969e-1
allele num: 121120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6348A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.54A>G
  hgvsp: ENST00000442195.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.563A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.171A>G
  hgvsp: ENST00000378319.3:c.171A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6348A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.351A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.54A>G
  hgvsp: ENST00000465045.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6348A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.54A>G
  hgvsp: ENST00000488958.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6348A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.54A>G
  hgvsp: ENST00000485919.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6348A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.203A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.54A>G
  hgvsp: ENST00000357596.3:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 2.75e1
  variant carriers: 2663
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 7.75e1
  variant carriers: 1267
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 4.75e1
  variant carriers: 6131
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 6.25e1
  variant carriers: 3337
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 2.25e1
  variant carriers: 1126
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 5.75e1
  variant carriers: 4409
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.75e1
  variant carriers: 5499
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 3.25e1
  variant carriers: 4300
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.25e1
  variant carriers: 1681
genotype quality: GenotypeQuality
hgvs: p.Leu57Leu
num of homozygotes: 30644
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ

13-50080848-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080848
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080848
    reference: chr 13
allele count: 1
allele frequency: 8.298892927683448e-6
allele num: 120498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6347T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.564T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.172T>G
  hgvsp: ENSP00000367570.3:p.Tyr58Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.204T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6347T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.55T>G
  hgvsp: ENSP00000405227.1:p.Tyr19Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.55T>G
  hgvsp: ENSP00000350209.3:p.Tyr19Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.352T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6347T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.55T>G
  hgvsp: ENSP00000420129.1:p.Tyr19Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6347T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.55T>G
  hgvsp: ENSP00000417539.1:p.Tyr19Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.55T>G
  hgvsp: ENSP00000418630.1:p.Tyr19Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6347T>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr58Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

13-50080855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080855
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080855
    reference: chr 13
allele count: 1
allele frequency: 8.332361224523806e-6
allele num: 120014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.359C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.62C>T
  hgvsp: ENSP00000420129.1:p.Ala21Val
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6340C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.179C>T
  hgvsp: ENSP00000367570.3:p.Ala60Val
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6340C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6340C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.571C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6340C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.62C>T
  hgvsp: ENSP00000405227.1:p.Ala21Val
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6340C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.62C>T
  hgvsp: ENSP00000350209.3:p.Ala21Val
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.211C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.62C>T
  hgvsp: ENSP00000418630.1:p.Ala21Val
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.62C>T
  hgvsp: ENSP00000417539.1:p.Ala21Val
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala60Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

13-50080856-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080856
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080856
    reference: chr 13
allele count: 1
allele frequency: 8.341953351796856e-6
allele num: 119876
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6339A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.63A>G
  hgvsp: ENST00000357596.3:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.63A>G
  hgvsp: ENST00000485919.1:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.180A>G
  hgvsp: ENST00000378319.3:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.360A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.212A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6339A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.572A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6339A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.63A>G
  hgvsp: ENST00000465045.1:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.63A>G
  hgvsp: ENST00000442195.1:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.63A>G
  hgvsp: ENST00000488958.1:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6339A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6339A>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala60Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

13-50080859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080859
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080859
    reference: chr 13
allele count: 2
allele frequency: 1.671989165510208e-5
allele num: 119618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.575A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6336A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.66A>G
  hgvsp: ENST00000485919.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.363A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.66A>G
  hgvsp: ENST00000465045.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.66A>G
  hgvsp: ENST00000357596.3:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.183A>G
  hgvsp: ENST00000378319.3:c.183A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.215A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.66A>G
  hgvsp: ENST00000442195.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6336A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.66A>G
  hgvsp: ENST00000488958.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6336A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6336A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6336A>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31180
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln61Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

13-50080866-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080866
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080866
    reference: chr 13
allele count: 2
allele frequency: 1.681322191771609e-5
allele num: 118954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.73A>G
  hgvsp: ENSP00000350209.3:p.Asn25Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.73A>G
  hgvsp: ENSP00000405227.1:p.Asn25Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.190A>G
  hgvsp: ENSP00000367570.3:p.Asn64Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.73A>G
  hgvsp: ENSP00000420129.1:p.Asn25Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.73A>G
  hgvsp: ENSP00000418630.1:p.Asn25Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.370A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6329A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.222A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6329A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6329A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6329A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.73A>G
  hgvsp: ENSP00000417539.1:p.Asn25Asp
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6329A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.582A>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn64Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

13-50080874-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080874
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080874
    reference: chr 13
allele count: 1
allele frequency: 8.497043029025899e-6
allele num: 117688
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.198T>A
  hgvsp: ENST00000378319.3:c.198T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.230T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6321T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.81T>A
  hgvsp: ENST00000357596.3:c.81T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.590T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.81T>A
  hgvsp: ENST00000488958.1:c.81T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6321T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.81T>A
  hgvsp: ENST00000442195.1:c.81T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6321T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6321T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6321T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.378T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.81T>A
  hgvsp: ENST00000485919.1:c.81T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.81T>A
  hgvsp: ENST00000465045.1:c.81T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala66Ala
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

13-50080874-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080874
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080874
    reference: chr 13
allele count: 2
allele frequency: 1.69940860580518e-5
allele num: 117688
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6321T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.81T>C
  hgvsp: ENST00000357596.3:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.590T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.230T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.81T>C
  hgvsp: ENST00000465045.1:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.198T>C
  hgvsp: ENST00000378319.3:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.378T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.81T>C
  hgvsp: ENST00000442195.1:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6321T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.81T>C
  hgvsp: ENST00000485919.1:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6321T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.81T>C
  hgvsp: ENST00000488958.1:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6321T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6321T>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala66Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

13-50080903-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080903
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080903
    reference: chr 13
allele count: 1
allele frequency: 9.230712426385068e-6
allele num: 108334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6292T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.608+11T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.216+11T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.99+11T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6292T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6292T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.99+11T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.99+11T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6292T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.248+11T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.396+11T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.99+11T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.99+11T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6292T>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

13-50080903-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080903
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080902
    reference: chr 13
allele count: 1
allele frequency: 9.230712426385068e-6
allele num: 108334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6291delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.99+12delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.396+12delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.99+12delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6291delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6291delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.99+12delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6291delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6291delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.99+12delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.248+12delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.99+12delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.216+12delG
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.608+12delG
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20077
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: TG
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

13-50080910-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080910
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080910
    reference: chr 13
allele count: 2
allele frequency: 1.884907545284904e-5
allele num: 106106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.99+18A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.99+18A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6285A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.99+18A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.216+18A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.99+18A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6285A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.99+18A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.248+18A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.608+18A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6285A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.396+18A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6285A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6285A>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15882
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

13-50080910-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080910
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080910
    reference: chr 13
allele count: 47
allele frequency: 4.429532731419524e-4
allele num: 106106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6285A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.99+18A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.396+18A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6285A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6285A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.608+18A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.216+18A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.99+18A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6285A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.99+18A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.99+18A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.99+18A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.248+18A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6285A>T
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15882
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

13-50080914-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080914
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080914
    reference: chr 13
allele count: 8
allele frequency: 7.635190593445189e-5
allele num: 104778
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6281T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6281T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6281T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.608+22T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.99+22T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.216+22T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.248+22T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.396+22T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6281T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.99+22T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.99+22T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.99+22T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.99+22T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6281T>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13366
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

13-50080924-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080924
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080924
    reference: chr 13
allele count: 1
allele frequency: 9.858044164037856e-6
allele num: 101440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6271A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.396+32A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.99+32A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.248+32A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6271A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.99+32A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.216+32A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6271A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6271A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.608+32A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6271A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.99+32A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.99+32A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.99+32A>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23649
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

13-50080931-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080931
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080931
    reference: chr 13
allele count: 1
allele frequency: 1.023771985503389e-5
allele num: 97678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6264C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6264C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.216+39C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.99+39C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6264C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.248+39C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.99+39C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.608+39C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.396+39C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.99+39C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6264C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6264C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.99+39C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.99+39C>T
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

13-50080936-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080936
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080936
    reference: chr 13
allele count: 1
allele frequency: 1.063829787234043e-5
allele num: 94000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6259A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.99+44A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.216+44A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.99+44A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6259A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6259A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6259A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.248+44A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.608+44A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.99+44A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.99+44A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6259A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.396+44A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.99+44A>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21614
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

13-50080943-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50080943
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50080943
    reference: chr 13
allele count: 4
allele frequency: 4.543699025376559e-5
allele num: 88034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-6252G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.99+51G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-6252G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.99+51G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.608+51G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.396+51G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-6252G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.248+51G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.99+51G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.216+51G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-6252G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.99+51G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.99+51G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-6252G>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12998
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13065
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

13-50087152-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087152
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087152
    reference: chr 13
allele count: 1
allele frequency: 9.561326347190882e-6
allele num: 104588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.100-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.100-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.100-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.249-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.100-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.609-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.397-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.217-43T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.100-43T>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10271
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

13-50087174-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087174
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087175
    reference: chr 13
allele count: 80
allele frequency: 7.778771731943526e-4
allele num: 102844
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.100-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.609-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.100-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.100-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.100-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.397-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.217-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.100-12dupT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.249-12dupT
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27265
  bin: 2.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

13-50087174-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087174
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087173
    reference: chr 13
allele count: 136
allele frequency: 1.3223911944304e-3
allele num: 102844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.609-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.100-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.100-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.100-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.249-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.100-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.397-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.217-12delT
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.100-12delT
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11161
  bin: 2.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27265
  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: AT
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

13-50087178-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087178
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087178
    reference: chr 13
allele count: 4
allele frequency: 3.527896844296273e-5
allele num: 113382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.100-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.397-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.100-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.249-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.609-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.217-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.100-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.100-17T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.100-17T>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29929
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

13-50087187-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087187
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087187
    reference: chr 13
allele count: 6
allele frequency: 5.155436407691911e-5
allele num: 116382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.376-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.432-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.13-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.217-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.100-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.81-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.100-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.100-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.249-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.100-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.84-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.100-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.397-8A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.609-8A>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.217-8A>G
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

13-50087227-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087227
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087227
    reference: chr 13
allele count: 2
allele frequency: 1.668891855807744e-5
allele num: 119840
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.116T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.132T>C
  hgvsp: ENST00000485919.1:c.132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.249T>C
  hgvsp: ENST00000378319.3:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.132T>C
  hgvsp: ENST00000488958.1:c.132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.281T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.641T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.464T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.132T>C
  hgvsp: ENST00000465045.1:c.132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.113T>C
  hgvsp: ENST00000426879.1:c.113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.132T>C
  hgvsp: ENST00000357596.3:c.132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.408T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.132T>C
  hgvsp: ENST00000442195.1:c.132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.429T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.45T>C
  hgvsp: ENST00000496612.1:c.45T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp83Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

13-50087239-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087239
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087239
    reference: chr 13
allele count: 1
allele frequency: 8.349336227769892e-6
allele num: 119770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.144T>A
  hgvsp: ENST00000442195.1:c.144T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.441T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.144T>A
  hgvsp: ENST00000485919.1:c.144T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.144T>A
  hgvsp: ENST00000357596.3:c.144T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.653T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.144T>A
  hgvsp: ENST00000488958.1:c.144T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.144T>A
  hgvsp: ENST00000465045.1:c.144T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.125T>A
  hgvsp: ENST00000426879.1:c.125T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.57T>A
  hgvsp: ENST00000496612.1:c.57T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.261T>A
  hgvsp: ENST00000378319.3:c.261T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.420T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.293T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.476T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.128T>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu87Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

13-50087244-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087244
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087244
    reference: chr 13
allele count: 5
allele frequency: 4.176341858639181e-5
allele num: 119722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.149C>G
  hgvsp: ENSP00000405227.1:p.Pro50Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.149C>G
  hgvsp: ENSP00000420129.1:p.Pro50Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.481C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.425C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.149C>G
  hgvsp: ENSP00000350209.3:p.Pro50Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.133C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.130C>G
  hgvsp: ENSP00000394883.1:p.Pro44Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.62C>G
  hgvsp: ENSP00000419229.1:p.Pro21Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.149C>G
  hgvsp: ENSP00000418630.1:p.Pro50Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.298C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.446C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.658C>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.149C>G
  hgvsp: ENSP00000417539.1:p.Pro50Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.266C>G
  hgvsp: ENSP00000367570.3:p.Pro89Arg
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro89Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

13-50087244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087244
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087244
    reference: chr 13
allele count: 1
allele frequency: 8.352683717278361e-6
allele num: 119722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.425C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.149C>T
  hgvsp: ENSP00000418630.1:p.Pro50Leu
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.149C>T
  hgvsp: ENSP00000350209.3:p.Pro50Leu
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.62C>T
  hgvsp: ENSP00000419229.1:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.149C>T
  hgvsp: ENSP00000405227.1:p.Pro50Leu
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.481C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.149C>T
  hgvsp: ENSP00000420129.1:p.Pro50Leu
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.133C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.130C>T
  hgvsp: ENSP00000394883.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.266C>T
  hgvsp: ENSP00000367570.3:p.Pro89Leu
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.658C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.149C>T
  hgvsp: ENSP00000417539.1:p.Pro50Leu
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.446C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.298C>T
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro89Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

13-50087253-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087253
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087253
    reference: chr 13
allele count: 1
allele frequency: 8.384197464618687e-6
allele num: 119272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.139G>C
  hgvsp: ENSP00000394883.1:p.Ser47Thr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.142G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.158G>C
  hgvsp: ENSP00000418630.1:p.Ser53Thr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.71G>C
  hgvsp: ENSP00000419229.1:p.Ser24Thr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.275G>C
  hgvsp: ENSP00000367570.3:p.Ser92Thr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.158G>C
  hgvsp: ENSP00000417539.1:p.Ser53Thr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.455G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.158G>C
  hgvsp: ENSP00000350209.3:p.Ser53Thr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.434G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.158G>C
  hgvsp: ENSP00000420129.1:p.Ser53Thr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.490G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.307G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.158G>C
  hgvsp: ENSP00000405227.1:p.Ser53Thr
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.667G>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser92Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

13-50087261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087261
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087261
    reference: chr 13
allele count: 1
allele frequency: 8.431703204047217e-6
allele num: 118600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.463G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.147G>A
  hgvsp: ENSP00000394883.1:p.Val50Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.166G>A
  hgvsp: ENSP00000417539.1:p.Val56Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.498G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.79G>A
  hgvsp: ENSP00000419229.1:p.Val27Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.166G>A
  hgvsp: ENSP00000420129.1:p.Val56Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.283G>A
  hgvsp: ENSP00000367570.3:p.Val95Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.166G>A
  hgvsp: ENSP00000405227.1:p.Val56Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.166G>A
  hgvsp: ENSP00000418630.1:p.Val56Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.675G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.166G>A
  hgvsp: ENSP00000350209.3:p.Val56Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.442G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.150G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.315G>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val95Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

13-50087270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087270
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087270
    reference: chr 13
allele count: 1
allele frequency: 8.485938799409379e-6
allele num: 117842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.156G>A
  hgvsp: ENSP00000394883.1:p.Val53Ile
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.175G>A
  hgvsp: ENSP00000420129.1:p.Val59Ile
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.472G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.175G>A
  hgvsp: ENSP00000405227.1:p.Val59Ile
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.451G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.175G>A
  hgvsp: ENSP00000350209.3:p.Val59Ile
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.159G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.175G>A
  hgvsp: ENSP00000417539.1:p.Val59Ile
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.88G>A
  hgvsp: ENSP00000419229.1:p.Val30Ile
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.292G>A
  hgvsp: ENSP00000367570.3:p.Val98Ile
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.507G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.324G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.175G>A
  hgvsp: ENSP00000418630.1:p.Val59Ile
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.684G>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val98Ile
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

13-50087272-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087272
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087272
    reference: chr 13
allele count: 5
allele frequency: 4.253798642187473e-5
allele num: 117542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.686A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.177A>T
  hgvsp: ENST00000442195.1:c.177A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.90A>T
  hgvsp: ENST00000496612.1:c.90A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.326A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.177A>T
  hgvsp: ENST00000357596.3:c.177A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.453A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.294A>T
  hgvsp: ENST00000378319.3:c.294A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.474A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.177A>T
  hgvsp: ENST00000485919.1:c.177A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.177A>T
  hgvsp: ENST00000488958.1:c.177A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.161A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.158A>T
  hgvsp: ENST00000426879.1:c.158A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.509A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.177A>T
  hgvsp: ENST00000465045.1:c.177A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16546
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val98Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

13-50087303-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087303
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087303
    reference: chr 13
allele count: 6
allele frequency: 5.572582892170521e-5
allele num: 107670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.120+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.539+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.191+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.483+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.207+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.207+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.504+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.356+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.324+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.207+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.716+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.207+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.188+1G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.207+1G>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23216
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.324+1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum

13-50087322-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087322
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087322
    reference: chr 13
allele count: 1
allele frequency: 1.054162889249647e-5
allele num: 94862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.120+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.356+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.716+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.483+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.188+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.539+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.324+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.207+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.207+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.207+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.207+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.207+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.191+20T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.504+20T>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22610
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

13-50087326-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087326
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087326
    reference: chr 13
allele count: 1
allele frequency: 1.08542277216976e-5
allele num: 92130
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.324+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.356+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.716+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.207+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.207+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.120+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.207+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.504+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.483+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.207+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.539+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.188+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.207+24T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.191+24T>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

13-50087329-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087329
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087329
    reference: chr 13
allele count: 1
allele frequency: 1.101200308336086e-5
allele num: 90810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.191+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.483+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.504+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.207+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.207+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.716+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.539+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.356+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.324+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.207+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.207+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.207+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.188+27T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.120+27T>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25132
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

13-50087337-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087337
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087337
    reference: chr 13
allele count: 2
allele frequency: 2.343786621665964e-5
allele num: 85332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.539+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.716+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.483+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.207+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.120+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.188+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.504+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.207+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.356+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.207+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.207+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.207+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.191+35G>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.324+35G>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7788
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

13-50087337-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087337
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087336
    reference: chr 13
allele count: 2
allele frequency: 2.343786621665964e-5
allele num: 85332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.188+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.356+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.207+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.207+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.504+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.716+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.324+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.483+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.207+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.207+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.207+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.120+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.539+37delA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.191+37delA
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25060
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7788
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: GA
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

13-50087346-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087346
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087346
    reference: chr 13
allele count: 1
allele frequency: 1.312956252297673e-5
allele num: 76164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.483+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.716+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.207+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.207+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.504+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.324+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.207+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.191+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.539+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.188+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.356+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.207+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.207+44C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.120+44C>T
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8925
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17566
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21802
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

13-50087348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087348
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087348
    reference: chr 13
allele count: 1
allele frequency: 1.367801942278758e-5
allele num: 73110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.120+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.207+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.483+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.324+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.188+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.716+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.207+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.207+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.207+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.539+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.504+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.207+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.356+46C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.191+46C>T
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

13-50087352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087352
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087352
    reference: chr 13
allele count: 221
allele frequency: 3.114079585165145e-3
allele num: 70968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.207+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.483+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.356+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.324+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.191+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.207+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.207+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.539+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.120+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.716+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.504+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.188+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.207+50G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.207+50G>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19528
  bin: 7.5e0
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20140
  bin: 1.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/13-50087354-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50087354
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50087354
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 68396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.207+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.207+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.356+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.191+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.504+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.483+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.188+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.207+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.539+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.207+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.716+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.324+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.207+52A>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.120+52A>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 19942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19765
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/13-50092112-CAACA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092112
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092108
    reference: chr 13
allele count: 1
allele frequency: 1.337900032109601e-5
allele num: 74744
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.325-37_325-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.505-37_505-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.208-37_208-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.208-37_208-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.189-37_189-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.208-37_208-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.540-37_540-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.717-37_717-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.192-37_192-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.484-37_484-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.121-37_121-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.208-37_208-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.208-37_208-34delAACA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.357-37_357-34delAACA
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10748
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12246
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: CAACA
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/13-50092115-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092115
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092115
    reference: chr 13
allele count: 3
allele frequency: 4.268032437046522e-5
allele num: 70290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.189-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.208-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.208-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.192-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.540-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.325-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.121-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.505-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.208-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.208-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.484-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.208-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.357-39C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.717-39C>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6363
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

13-50092119-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092119
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092119
    reference: chr 13
allele count: 1
allele frequency: 1.459172357438861e-5
allele num: 68532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.540-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.192-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.208-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.208-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.208-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.357-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.484-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.208-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.189-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.208-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.121-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.717-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.325-35C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.505-35C>T
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7550
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

13-50092122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092122
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092122
    reference: chr 13
allele count: 1
allele frequency: 1.459768772626416e-5
allele num: 68504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.208-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.192-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.484-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.121-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.540-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.208-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.208-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.208-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.505-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.189-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.325-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.717-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.357-32G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.208-32G>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5905
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

13-50092123-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092123
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092123
    reference: chr 13
allele count: 2
allele frequency: 2.909937436345119e-5
allele num: 68730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.208-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.357-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.325-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.189-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.484-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.121-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.208-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.208-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.540-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.717-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.505-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.208-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.192-31T>C
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.208-31T>C
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

13-50092124-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092124
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092124
    reference: chr 13
allele count: 1
allele frequency: 1.447303673256723e-5
allele num: 69094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.208-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.192-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.189-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.717-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.208-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.208-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.484-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.505-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.325-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.208-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.540-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.121-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.208-30A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.357-30A>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8573
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

13-50092127-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092127
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092127
    reference: chr 13
allele count: 1
allele frequency: 8.434121080242228e-6
allele num: 118566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.208-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.208-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.325-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.208-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.357-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.121-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.505-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.192-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.208-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.189-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.540-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.208-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.717-27T>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.484-27T>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

13-50092127-TACTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092127
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092123
    reference: chr 13
allele count: 73656
allele frequency: 6.212236222863216e-1
allele num: 118566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.208-25_208-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.208-25_208-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.505-25_505-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.192-25_192-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.540-25_540-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.208-25_208-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.121-25_121-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.717-25_717-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.208-25_208-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.484-25_484-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.208-25_208-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.189-25_189-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.325-25_325-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.357-25_357-22delCTCA
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9642
  bin: 2.25e1
  variant carriers: 6066
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 959
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.75e1
  variant carriers: 466
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 2.75e1
  variant carriers: 7638
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 5.25e1
  variant carriers: 2210
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 3.75e1
  variant carriers: 7092
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 4.25e1
  variant carriers: 5211
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 1.75e1
  variant carriers: 3651
genotype depth: GenotypeDepth
  all individuals: 9193
  bin: 3.25e1
  variant carriers: 8171
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 6.75e1
  variant carriers: 715
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.75e1
  variant carriers: 1447
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 278
genotype quality: GenotypeQuality
num of homozygotes: 23081
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: TACTC
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

13-50092142-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092142
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092142
    reference: chr 13
allele count: 3
allele frequency: 2.498542516865162e-5
allele num: 120070
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.325-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.208-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.208-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.717-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.540-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.121-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.192-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.208-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.357-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.208-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.484-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.189-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.505-12A>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.208-12A>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/13-50092159-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092159
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092159
    reference: chr 13
allele count: 1
allele frequency: 8.291873963515755e-6
allele num: 120600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.213C>A
  hgvsp: ENSP00000420129.1:p.Cys71Ter
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.362C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.213C>A
  hgvsp: ENSP00000418630.1:p.Cys71Ter
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.722C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.126C>A
  hgvsp: ENSP00000419229.1:p.Cys42Ter
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.510C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.194C>A
  hgvsp: ENSP00000394883.1:p.Cys65Ter
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.213C>A
  hgvsp: ENSP00000405227.1:p.Cys71Ter
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.213C>A
  hgvsp: ENSP00000350209.3:p.Cys71Ter
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.213C>A
  hgvsp: ENSP00000417539.1:p.Cys71Ter
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.545C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.197C>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.330C>A
  hgvsp: ENSP00000367570.3:p.Cys110Ter
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.489C>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys110Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

13-50092164-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092164
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092164
    reference: chr 13
allele count: 2
allele frequency: 1.656369569178275e-5
allele num: 120746
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.550T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.218T>G
  hgvsp: ENSP00000418630.1:p.Phe73Cys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.131T>G
  hgvsp: ENSP00000419229.1:p.Phe44Cys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.218T>G
  hgvsp: ENSP00000350209.3:p.Phe73Cys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.515T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.335T>G
  hgvsp: ENSP00000367570.3:p.Phe112Cys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.199T>G
  hgvsp: ENSP00000394883.1:p.Phe67Cys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.494T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.727T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.218T>G
  hgvsp: ENSP00000405227.1:p.Phe73Cys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.218T>G
  hgvsp: ENSP00000420129.1:p.Phe73Cys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.218T>G
  hgvsp: ENSP00000417539.1:p.Phe73Cys
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.202T>G
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.367T>G
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe112Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

13-50092183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092183
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092183
    reference: chr 13
allele count: 1
allele frequency: 8.253549026081216e-6
allele num: 121160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.237C>T
  hgvsp: ENST00000465045.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.534C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.237C>T
  hgvsp: ENST00000442195.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.237C>T
  hgvsp: ENST00000357596.3:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.221C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.354C>T
  hgvsp: ENST00000378319.3:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.150C>T
  hgvsp: ENST00000496612.1:c.150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.386C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.237C>T
  hgvsp: ENST00000485919.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.218C>T
  hgvsp: ENST00000426879.1:c.218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.237C>T
  hgvsp: ENST00000488958.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.569C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.746C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.513C>T
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala118Ala
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

13-50092186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092186
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092186
    reference: chr 13
allele count: 3
allele frequency: 2.47537006782514e-5
allele num: 121194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.749C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.240C>T
  hgvsp: ENST00000485919.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.572C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.240C>T
  hgvsp: ENST00000442195.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.221C>T
  hgvsp: ENST00000426879.1:c.221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.153C>T
  hgvsp: ENST00000496612.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.537C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.357C>T
  hgvsp: ENST00000378319.3:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.240C>T
  hgvsp: ENST00000488958.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.516C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.389C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.240C>T
  hgvsp: ENST00000465045.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.224C>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.240C>T
  hgvsp: ENST00000357596.3:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr119Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

13-50092187-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092187
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092187
    reference: chr 13
allele count: 2
allele frequency: 1.649947201689546e-5
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.225G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.390G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.241G>A
  hgvsp: ENSP00000350209.3:p.Val81Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.573G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.517G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.154G>A
  hgvsp: ENSP00000419229.1:p.Val52Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.241G>A
  hgvsp: ENSP00000418630.1:p.Val81Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.538G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.358G>A
  hgvsp: ENSP00000367570.3:p.Val120Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.241G>A
  hgvsp: ENSP00000420129.1:p.Val81Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.241G>A
  hgvsp: ENSP00000405227.1:p.Val81Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.222G>A
  hgvsp: ENSP00000394883.1:p.Val75Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.241G>A
  hgvsp: ENSP00000417539.1:p.Val81Met
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.750G>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val120Met
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

13-50092190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092190
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092190
    reference: chr 13
allele count: 3
allele frequency: 2.473981956424931e-5
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.228G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.244G>A
  hgvsp: ENSP00000420129.1:p.Gly82Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.244G>A
  hgvsp: ENSP00000417539.1:p.Gly82Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.393G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.244G>A
  hgvsp: ENSP00000418630.1:p.Gly82Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.225G>A
  hgvsp: ENSP00000394883.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.244G>A
  hgvsp: ENSP00000405227.1:p.Gly82Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.753G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.157G>A
  hgvsp: ENSP00000419229.1:p.Gly53Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.244G>A
  hgvsp: ENSP00000350209.3:p.Gly82Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.361G>A
  hgvsp: ENSP00000367570.3:p.Gly121Arg
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.520G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.541G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.576G>A
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly121Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

13-50092196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092196
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092196
    reference: chr 13
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.759G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.250G>A
  hgvsp: ENSP00000350209.3:p.Asp84Asn
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.234G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.547G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.250G>A
  hgvsp: ENSP00000417539.1:p.Asp84Asn
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.367G>A
  hgvsp: ENSP00000367570.3:p.Asp123Asn
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.399G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.250G>A
  hgvsp: ENSP00000405227.1:p.Asp84Asn
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.526G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.231G>A
  hgvsp: ENSP00000394883.1:p.Asp78Asn
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.163G>A
  hgvsp: ENSP00000419229.1:p.Asp55Asn
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.250G>A
  hgvsp: ENSP00000418630.1:p.Asp84Asn
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000481509
  gene symbol: PHF11
  hgvsc: ENST00000481509.1:n.582G>A
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.250G>A
  hgvsp: ENSP00000420129.1:p.Asp84Asn
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp123Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

13-50092201-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50092201
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50092201
    reference: chr 13
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000482487
  gene symbol: PHF11
  hgvsc: ENST00000482487.1:n.764A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000419229
  ensembl transcript: ENST00000496612
  gene symbol: PHF11
  hgvsc: ENST00000496612.1:c.168A>T
  hgvsp: ENSP00000419229.1:p.Leu56Phe
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000394883
  ensembl transcript: ENST00000426879
  gene symbol: PHF11
  hgvsc: ENST00000426879.1:c.236A>T
  hgvsp: ENSP00000394883.1:p.Leu79Phe
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000367570
  ensembl transcript: ENST00000378319
  gene symbol: PHF11
  hgvsc: ENST00000378319.3:c.372A>T
  hgvsp: ENSP00000367570.3:p.Leu124Phe
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000405227
  ensembl transcript: ENST00000442195
  gene symbol: PHF11
  hgvsc: ENST00000442195.1:c.255A>T
  hgvsp: ENSP00000405227.1:p.Leu85Phe
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000417539
  ensembl transcript: ENST00000488958
  gene symbol: PHF11
  hgvsc: ENST00000488958.1:c.255A>T
  hgvsp: ENSP00000417539.1:p.Leu85Phe
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000420129
  ensembl transcript: ENST00000485919
  gene symbol: PHF11
  hgvsc: ENST00000485919.1:c.255A>T
  hgvsp: ENSP00000420129.1:p.Leu85Phe
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000487433
  gene symbol: PHF11
  hgvsc: ENST00000487433.2:n.531A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000350209
  ensembl transcript: ENST00000357596
  gene symbol: PHF11
  hgvsc: ENST00000357596.3:c.255A>T
  hgvsp: ENSP00000350209.3:p.Leu85Phe
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000496623
  gene symbol: PHF11
  hgvsc: ENST00000496623.1:n.404A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000476953
  gene symbol: PHF11
  hgvsc: ENST00000476953.2:n.239A>T
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136147
  ensembl protein: ENSP00000418630
  ensembl transcript: ENST00000465045
  gene symbol: PHF11
  hgvsc: ENST00000465045.1:c.255A>T
  hgvsp: ENSP00000418630.1:p.Leu85Phe
  variant of: http://identifiers.org/hgnc/17024
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136147
  ensembl transcript: ENST00000467763
  gene symbol: PHF11
  hgvsc: ENST00000467763.1:n.552A>T
  variant of: http://identifiers.org/hgnc/17024
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu124Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 840
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1898
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 998
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1016
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5674
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32923
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998500749625187e-5
allele num: 66700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 2.802247e6

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.614e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.325e1

GenotypeDepth
all individuals: 926
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4335
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 840
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 840
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1361
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8944
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5674
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9417
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3927
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3138
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32923
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.267e0

QD
type: SiteQuality
SIO_000300: 1.503e1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.083e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e-1

DP
type: SiteQuality
SIO_000300: 2.801657e6

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

GenotypeDepth
all individuals: 387
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 926
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7230
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1016
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 840
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5675
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2895
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3137
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32925
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3918
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.999160117583539e-5
allele num: 66676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.219e0

QD
type: SiteQuality
SIO_000300: 1.36e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 2.801641e6

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

GenotypeDepth
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5278
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8861
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 840
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7228
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6638
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2895
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8892
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32927
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3207
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3139
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
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allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQRankSum
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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DP
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QD
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VQSLOD
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ReadPosRankSum
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SIO_000300: 5.4e-1

BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 3.031037827352086e-4
allele num: 16496
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

MQ
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SIO_000300: 5.927e1

VQSLOD
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DP
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QD
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InbreedingCoeff
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SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

FS
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ClippingRankSum
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SIO_000300: -6.3e-2

BaseQRankSum
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SIO_000300: -2.308e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.27e-1

DP
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MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
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SIO_000300: 1.373e1

BaseQRankSum
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SIO_000300: -7.92e-1

VQSLOD
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SIO_000300: 1.74e0

InbreedingCoeff
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SIO_000300: -1.0e-4

FS
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SIO_000300: 4.313e0

ReadPosRankSum
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SIO_000300: -6.18e-1

ClippingRankSum
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SIO_000300: -6.01e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 8
allele frequency: 4.849660523763337e-4
allele num: 16496
num of homozygotes: 0

VQSLOD
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DP
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FS
type: SiteQuality
SIO_000300: 5.51e-1

ReadPosRankSum
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SIO_000300: 3.06e-1

InbreedingCoeff
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SIO_000300: 4.1e-2

MQ
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SIO_000300: 5.939e1

BaseQRankSum
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SIO_000300: 2.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

MQRankSum
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SIO_000300: 1.48e-1

QD
type: SiteQuality
SIO_000300: 2.656e1

GenotypeDepth
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bin: 4.25e1
variant carriers: 6182

GenotypeDepth
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variant carriers: 5550

GenotypeDepth
all individuals: 880
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variant carriers: 869

GenotypeDepth
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variant carriers: 998

GenotypeDepth
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variant carriers: 2334

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 153

Latino
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allele count: 9111
allele frequency: 7.885580751254977e-1
allele num: 11554
num of homozygotes: 3618

European (Finnish)
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allele count: 4433
allele frequency: 6.714631929718268e-1
allele num: 6602
num of homozygotes: 1519

South Asian
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allele frequency: 6.528249272550921e-1
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num of homozygotes: 3537

African
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allele count: 9172
allele frequency: 8.822624086186995e-1
allele num: 10396
num of homozygotes: 4042

European (Non-Finnish)
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allele count: 43848
allele frequency: 6.590710957462799e-1
allele num: 66530
num of homozygotes: 14520

Other
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allele frequency: 6.946902654867256e-1
allele num: 904
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East Asian
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allele frequency: 8.630470016207455e-1
allele num: 8638
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VQSLOD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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DP
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InbreedingCoeff
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QD
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BaseQRankSum
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SIO_000300: 2.81e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66180
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
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South Asian
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allele frequency: 6.091617933723197e-5
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num of homozygotes: 0

Latino
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Other
type: Population
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FS
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SIO_000300: 4.313e0

MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65892
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
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allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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VQSLOD
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
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allele frequency: 8.742787200559538e-5
allele num: 11438
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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SIO_000300: 1.74791e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 2
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allele num: 10168
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DP
type: SiteQuality
SIO_000300: 1.741402e6

VQSLOD
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FS
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MQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
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allele num: 65196
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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East Asian
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DP
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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VQSLOD
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DP
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BaseQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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Other
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ReadPosRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.073652566029633e-4
allele num: 9314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.237e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.598e0

DP
type: SiteQuality
SIO_000300: 1.441361e6

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.71503052754339e-5
allele num: 58308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10452
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.441361e6

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 2.598e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.782821365681862e-5
allele num: 10222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57036
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.096972356296621e-4
allele num: 9116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7720
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 1.283e1

FS
type: SiteQuality
SIO_000300: 8.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

DP
type: SiteQuality
SIO_000300: 1.334903e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeDepth
all individuals: 17468
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 150
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variant carriers: 1

GenotypeDepth
all individuals: 150
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variant carriers: 0

GenotypeDepth
all individuals: 7138
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 47

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1584
bin: 3.75e1
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GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.629917946560068e-4
allele num: 57036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7720
num of homozygotes: 0

South Asian
type: Population
allele count: 28
allele frequency: 1.871407565833445e-3
allele num: 14962
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.219512195121951e-3
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.934846409704559e-4
allele num: 10222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 8.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

DP
type: SiteQuality
SIO_000300: 1.334903e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

GenotypeDepth
all individuals: 686
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 6680
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variant carriers: 3

GenotypeDepth
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GenotypeQuality
all individuals: 395
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.238341968911917e-4
allele num: 6176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.108583614714768e-5
allele num: 56270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14816
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.637826431020839e-4
allele num: 7582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-1

FS
type: SiteQuality
SIO_000300: 3.423e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 1.2705e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.41e-1

QD
type: SiteQuality
SIO_000300: 1.077e1

GenotypeDepth
all individuals: 144
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.935774726036899e-5
allele num: 14418
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DP
type: SiteQuality
SIO_000300: 1.139563e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

BaseQRankSum
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SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

QD
type: SiteQuality
SIO_000300: 7.21e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51890
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.063377286261165e-4
allele num: 9404
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.329e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

QD
type: SiteQuality
SIO_000300: 1.004e1

MQ
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SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.074552e6

ClippingRankSum
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SIO_000300: -2.12e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.015722636565209e-5
allele num: 49610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

DP
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SIO_000300: 1.044661e6

FS
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SIO_000300: 0.0e0

BaseQRankSum
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ClippingRankSum
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VQSLOD
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SIO_000300: -2.622e0

QD
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MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.696030262185312e-5
allele num: 45998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12898
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.918e0

BaseQRankSum
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SIO_000300: -1.769e0

DP
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SIO_000300: 1.030573e6

FS
type: SiteQuality
SIO_000300: 1.4139e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

InbreedingCoeff
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SIO_000300: -8.699999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.001e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10502
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.978299026647519e-5
allele num: 12534
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.215e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.143e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.283865e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

QD
type: SiteQuality
SIO_000300: 9.9e0

GenotypeDepth
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variant carriers: 45

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 19

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 290
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variant carriers: 0

African
type: Population
allele count: 8
allele frequency: 8.699434536755111e-4
allele num: 9196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.996802557953637e-4
allele num: 7506
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.083103584088224e-3
allele num: 10156
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.611343860779891e-4
allele num: 6206
num of homozygotes: 0

South Asian
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allele count: 22
allele frequency: 1.841312353531972e-3
allele num: 11948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 6.134109152090855e-4
allele num: 57058
num of homozygotes: 0

QD
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SIO_000300: 5.45e0

FS
type: SiteQuality
SIO_000300: 2.578e0

ClippingRankSum
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MQRankSum
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ReadPosRankSum
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SIO_000300: -2.1e-2

VQSLOD
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BaseQRankSum
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SIO_000300: -3.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.587047e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 24

GenotypeDepth
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GenotypeDepth
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variant carriers: 11

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 84

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.611343860779891e-4
allele num: 6206
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.938558487593541e-4
allele num: 10156
num of homozygotes: 0

European (Non-Finnish)
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allele count: 107
allele frequency: 1.875284797924918e-3
allele num: 57058
num of homozygotes: 0

African
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allele count: 5
allele frequency: 5.437146585471945e-4
allele num: 9196
num of homozygotes: 0

Other
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allele count: 0
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South Asian
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allele count: 17
allele frequency: 1.422832273183797e-3
allele num: 11948
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.664535038635758e-4
allele num: 7506
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ClippingRankSum
type: SiteQuality
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FS
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DP
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MQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.413545407901488e-5
allele num: 62368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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ClippingRankSum
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SIO_000300: 9.24e-1

InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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SIO_000300: 2.83e0

DP
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FS
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MQ
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SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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allele num: 11360
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European (Finnish)
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South Asian
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QD
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MQ
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ClippingRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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Other
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African
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European (Finnish)
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DP
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QD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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East Asian
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European (Finnish)
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Other
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South Asian
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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Latino
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East Asian
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FS
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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DP
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GenotypeDepth
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East Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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MQ
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FS
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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QD
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InbreedingCoeff
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DP
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 1.553325670260027e-5
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MQ
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ReadPosRankSum
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 64186
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African
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South Asian
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VQSLOD
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DP
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MQRankSum
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BaseQRankSum
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FS
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MQ
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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num of homozygotes: 0

Other
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African
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European (Finnish)
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East Asian
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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DP
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QD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 6332
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Latino
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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Other
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European (Finnish)
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Latino
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East Asian
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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South Asian
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Other
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European (Non-Finnish)
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DP
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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FS
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QD
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InbreedingCoeff
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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African
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Other
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

African
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Other
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European (Non-Finnish)
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allele num: 47350
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East Asian
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European (Finnish)
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Latino
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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FS
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MQ
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MQRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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South Asian
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European (Finnish)
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Other
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African
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European (Non-Finnish)
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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MQ
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DP
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 6738
num of homozygotes: 0

South Asian
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European (Non-Finnish)
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East Asian
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Latino
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Other
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European (Finnish)
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
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QD
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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South Asian
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Latino
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ClippingRankSum
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MQ
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MQRankSum
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FS
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VQSLOD
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QD
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DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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South Asian
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Latino
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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allele num: 42774
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South Asian
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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FS
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ClippingRankSum
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DP
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MQRankSum
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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Other
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FS
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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Other
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Latino
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East Asian
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European (Finnish)
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ReadPosRankSum
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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VQSLOD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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Latino
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East Asian
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African
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European (Finnish)
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MQ
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Other
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Latino
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African
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South Asian
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QD
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DP
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQ
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.488e1

MQRankSum
type: SiteQuality
SIO_000300: -8.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.81e-2

FS
type: SiteQuality
SIO_000300: 3.888e0

QD
type: SiteQuality
SIO_000300: 2.128e1

DP
type: SiteQuality
SIO_000300: 2.174016e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

GenotypeDepth
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variant carriers: 1438

GenotypeDepth
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variant carriers: 364

GenotypeDepth
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variant carriers: 1215

GenotypeDepth
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variant carriers: 560

GenotypeDepth
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GenotypeDepth
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variant carriers: 3315

GenotypeQuality
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variant carriers: 401

GenotypeQuality
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variant carriers: 694

GenotypeQuality
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GenotypeQuality
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variant carriers: 711

GenotypeQuality
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bin: 7.5e0
variant carriers: 116

GenotypeQuality
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variant carriers: 1344

GenotypeQuality
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variant carriers: 1019

GenotypeQuality
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variant carriers: 396

GenotypeQuality
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bin: 1.25e1
variant carriers: 147

GenotypeQuality
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variant carriers: 475

GenotypeQuality
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bin: 2.5e0
variant carriers: 101

GenotypeQuality
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bin: 8.25e1
variant carriers: 1131

GenotypeQuality
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bin: 2.75e1
variant carriers: 222

GenotypeQuality
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variant carriers: 936

GenotypeQuality
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variant carriers: 39558

GenotypeQuality
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variant carriers: 942

GenotypeQuality
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variant carriers: 209

GenotypeQuality
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variant carriers: 218

GenotypeQuality
all individuals: 1511
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variant carriers: 1380

GenotypeQuality
all individuals: 1274
bin: 8.75e1
variant carriers: 1196

African
type: Population
allele count: 5493
allele frequency: 5.423578199052133e-1
allele num: 10128
num of homozygotes: 1482

Latino
type: Population
allele count: 8150
allele frequency: 7.155399473222125e-1
allele num: 11390
num of homozygotes: 2921

Other
type: Population
allele count: 555
allele frequency: 6.26410835214447e-1
allele num: 886
num of homozygotes: 161

South Asian
type: Population
allele count: 8399
allele frequency: 5.355138995154297e-1
allele num: 15684
num of homozygotes: 2220

European (Finnish)
type: Population
allele count: 4067
allele frequency: 6.220556745182013e-1
allele num: 6538
num of homozygotes: 1283

East Asian
type: Population
allele count: 6769
allele frequency: 7.995511457595086e-1
allele num: 8466
num of homozygotes: 2697

European (Non-Finnish)
type: Population
allele count: 40223
allele frequency: 6.14335461404527e-1
allele num: 65474
num of homozygotes: 12317

FS
type: SiteQuality
SIO_000300: 3.888e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.488e1

QD
type: SiteQuality
SIO_000300: 2.128e1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.81e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.27e-1

DP
type: SiteQuality
SIO_000300: 2.174016e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33272
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GenotypeQuality
all individuals: 1016
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.530900743067722e-5
allele num: 66212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16008
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

FS
type: SiteQuality
SIO_000300: 1.971e0

MQRankSum
type: SiteQuality
SIO_000300: 2.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-1

QD
type: SiteQuality
SIO_000300: 1.561e1

MQ
type: SiteQuality
SIO_000300: 5.533e1

VQSLOD
type: SiteQuality
SIO_000300: -1.524e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.757333e6

GenotypeDepth
all individuals: 100
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1004
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GenotypeQuality
all individuals: 8825
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.703085581214826e-5
allele num: 10306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.334e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

DP
type: SiteQuality
SIO_000300: 1.783728e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.568e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.181e0

QD
type: SiteQuality
SIO_000300: 7.95e0

FS
type: SiteQuality
SIO_000300: 3.585e0

MQ
type: SiteQuality
SIO_000300: 5.425e1

MQRankSum
type: SiteQuality
SIO_000300: -1.814e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

GenotypeDepth
all individuals: 559
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variant carriers: 0

GenotypeDepth
all individuals: 106
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variant carriers: 0

GenotypeDepth
all individuals: 40
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variant carriers: 0

GenotypeDepth
all individuals: 2014
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GenotypeDepth
all individuals: 441
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GenotypeDepth
all individuals: 100
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8901
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.939487975174554e-4
allele num: 10312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.341e1

DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -4.0e-4

MQ
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SIO_000300: 5.314e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -1.48e0

MQRankSum
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SIO_000300: -2.043e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.61e-1

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.805e1

DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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SIO_000300: -1.115e0

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.473026163463765e-4
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

African
type: Population
allele count: 0
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South Asian
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allele frequency: 0.0e0
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DP
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SIO_000300: 1.797654e6

VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.644e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

VQSLOD
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MQ
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ClippingRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -5.1e-1

MQRankSum
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FS
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QD
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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ReadPosRankSum
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QD
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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SIO_000300: -2.47e-1

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

East Asian
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South Asian
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QD
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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SIO_000300: 8.62e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
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SIO_000300: 5.92e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
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allele num: 6614
num of homozygotes: 0

South Asian
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Latino
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Other
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East Asian
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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VQSLOD
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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