13-50057606-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057606
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057606
    reference: chr 13
allele count: 4
allele frequency: 6.142883469500583e-5
allele num: 65116
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1425G>A
  hgvsp: ENST00000317257.8:c.1425G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1389G>A
  hgvsp: ENST00000354234.4:c.1389G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1389G>A
  hgvsp: ENST00000258672.5:c.1389G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24737
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18613
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr475Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

13-50057608-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057608
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057608
    reference: chr 13
allele count: 2
allele frequency: 2.963841138114997e-5
allele num: 67480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1391A>G
  hgvsp: ENSP00000258672.4:p.Lys464Arg
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1391A>G
  hgvsp: ENSP00000346175.4:p.Lys464Arg
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1427A>G
  hgvsp: ENSP00000326477.8:p.Lys476Arg
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23881
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys476Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

13-50057632-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057632
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057632
    reference: chr 13
allele count: 1
allele frequency: 1.152472052552726e-5
allele num: 86770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1415A>G
  hgvsp: ENSP00000258672.4:p.Gln472Arg
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1451A>G
  hgvsp: ENSP00000326477.8:p.Gln484Arg
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1415A>G
  hgvsp: ENSP00000346175.4:p.Gln472Arg
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1356
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln484Arg
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/13-50057633-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057633
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057633
    reference: chr 13
allele count: 2
allele frequency: 1.852400711321873e-5
allele num: 107968
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1416A>C
  hgvsp: ENSP00000346175.4:p.Gln472His
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1416A>C
  hgvsp: ENSP00000258672.4:p.Gln472His
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1452A>C
  hgvsp: ENSP00000326477.8:p.Gln484His
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 32273
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9294
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3910
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln484His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

13-50057633-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057633
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057633
    reference: chr 13
allele count: 57147
allele frequency: 5.292957172495554e-1
allele num: 107968
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1452A>G
  hgvsp: ENST00000317257.8:c.1452A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1416A>G
  hgvsp: ENST00000354234.4:c.1416A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1416A>G
  hgvsp: ENST00000258672.5:c.1416A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 544
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 3.75e1
  variant carriers: 3211
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.75e1
  variant carriers: 542
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 7.5e0
  variant carriers: 1841
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.25e1
  variant carriers: 1910
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 793
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 1.25e1
  variant carriers: 5297
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 499
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.25e1
  variant carriers: 4720
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 2.75e1
  variant carriers: 5988
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.25e1
  variant carriers: 580
genotype depth: GenotypeDepth
  all individuals: 14909
  bin: 2.25e1
  variant carriers: 6928
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 1196
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 503
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 9.75e1
  variant carriers: 2067
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.75e1
  variant carriers: 633
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 362
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 1.75e1
  variant carriers: 6792
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 5.25e1
  variant carriers: 1149
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 4.75e1
  variant carriers: 1049
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 786
genotype quality: GenotypeQuality
  all individuals: 9294
  bin: 6.25e1
  variant carriers: 1110
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 1.75e1
  variant carriers: 306
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 926
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.5e0
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 7.75e1
  variant carriers: 949
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.5e0
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.25e1
  variant carriers: 169
genotype quality: GenotypeQuality
  all individuals: 3910
  bin: 2.25e1
  variant carriers: 511
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 4.25e1
  variant carriers: 589
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 7.25e1
  variant carriers: 566
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.75e1
  variant carriers: 573
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 2.75e1
  variant carriers: 371
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 8.25e1
  variant carriers: 1000
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 6.75e1
  variant carriers: 1093
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 5.75e1
  variant carriers: 654
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 9.25e1
  variant carriers: 859
hgvs: p.Gln484Gln
num of homozygotes: 14559
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

13-50057635-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057635
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057635
    reference: chr 13
allele count: 1
allele frequency: 9.593246354566385e-6
allele num: 104240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1418A>G
  hgvsp: ENSP00000346175.4:p.Tyr473Cys
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1454A>G
  hgvsp: ENSP00000326477.8:p.Tyr485Cys
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1418A>G
  hgvsp: ENSP00000258672.4:p.Tyr473Cys
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5462
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9795
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr485Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

13-50057648-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057648
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057648
    reference: chr 13
allele count: 4
allele frequency: 3.819928567335791e-5
allele num: 104714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1431T>C
  hgvsp: ENST00000258672.5:c.1431T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1431T>C
  hgvsp: ENST00000354234.4:c.1431T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1467T>C
  hgvsp: ENST00000317257.8:c.1467T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5393
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9895
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile489Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

13-50057652-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057652
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057652
    reference: chr 13
allele count: 1
allele frequency: 9.54380606986066e-6
allele num: 104780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1435G>C
  hgvsp: ENSP00000258672.4:p.Asp479His
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1471G>C
  hgvsp: ENSP00000326477.8:p.Asp491His
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1435G>C
  hgvsp: ENSP00000346175.4:p.Asp479His
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28475
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3458
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5373
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp491His
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/13-50057673-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057673
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057673
    reference: chr 13
allele count: 1
allele frequency: 9.59232613908873e-6
allele num: 104250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1456A>C
  hgvsp: ENSP00000346175.4:p.Ile486Leu
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1492A>C
  hgvsp: ENSP00000326477.8:p.Ile498Leu
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1456A>C
  hgvsp: ENSP00000258672.4:p.Ile486Leu
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11542
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile498Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

13-50057686-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057686
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057686
    reference: chr 13
allele count: 1
allele frequency: 9.790100250626566e-6
allele num: 102144
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1505A>G
  hgvsp: ENSP00000326477.8:p.Asn502Ser
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1469A>G
  hgvsp: ENSP00000258672.4:p.Asn490Ser
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1469A>G
  hgvsp: ENSP00000346175.4:p.Asn490Ser
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14990
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn502Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

13-50057688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057688
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057688
    reference: chr 13
allele count: 1
allele frequency: 9.822989725152747e-6
allele num: 101802
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1507G>A
  hgvsp: ENSP00000326477.8:p.Gly503Arg
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1471G>A
  hgvsp: ENSP00000346175.4:p.Gly491Arg
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1471G>A
  hgvsp: ENSP00000258672.4:p.Gly491Arg
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 194
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5235
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3434
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25913
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly503Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

13-50057690-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057690
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057691
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 100184
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1516dupA
  hgvsp: ENSP00000326477.8:p.Met506AsnfsTer14
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1480dupA
  hgvsp: ENSP00000258672.4:p.Met494AsnfsTer14
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1480dupA
  hgvsp: ENSP00000346175.4:p.Met494AsnfsTer14
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8931
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4931
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23867
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met506AsnfsTer14
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

13-50057690-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057690
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057689
    reference: chr 13
allele count: 4
allele frequency: 3.992653517527749e-5
allele num: 100184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1480delA
  hgvsp: ENSP00000258672.4:p.Met494TrpfsTer24
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1516delA
  hgvsp: ENSP00000326477.8:p.Met506TrpfsTer24
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1480delA
  hgvsp: ENSP00000346175.4:p.Met494TrpfsTer24
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12251
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14643
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23867
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met506TrpfsTer24
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: GA
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

13-50057691-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057691
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057691
    reference: chr 13
allele count: 2
allele frequency: 1.99541055572184e-5
allele num: 100230
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1510A>G
  hgvsp: ENSP00000326477.8:p.Lys504Glu
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1474A>G
  hgvsp: ENSP00000346175.4:p.Lys492Glu
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1474A>G
  hgvsp: ENSP00000258672.4:p.Lys492Glu
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12269
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3423
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4971
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys504Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

13-50057697-ATGGTAAAAAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057697
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057686
    reference: chr 13
allele count: 1
allele frequency: 1.006076703287859e-5
allele num: 99396
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1517_1518+9delTGGTAAAAAAT
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: ATGGTAAAAAAT
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

13-50057701-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057701
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057701
    reference: chr 13
allele count: 1
allele frequency: 1.023436700440078e-5
allele num: 97710
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1518+2T>G
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1482+2T>G
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1482+2T>G
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21814
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3339
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1518+2T>G
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

13-50057701-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057701
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057702
    reference: chr 13
allele count: 1
allele frequency: 1.023436700440078e-5
allele num: 97710
alternate allele: TA
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1518+8dupA
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1482+8dupA
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1482+8dupA
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21814
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 9.75e1
  variant carriers: 1
hgvs: c.1518+8dupA
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

13-50057708-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057708
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057708
    reference: chr 13
allele count: 1
allele frequency: 1.068992794988562e-5
allele num: 93546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1482+9T>A
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1518+9T>A
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1482+9T>A
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

13-50057709-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057709
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057709
    reference: chr 13
allele count: 2
allele frequency: 2.107792508905423e-5
allele num: 94886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1482+10G>T
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1482+10G>T
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1518+10G>T
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20151
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3655
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

13-50057710-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057710
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057710
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 93466
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1482+11C>G
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1518+11C>G
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1482+11C>G
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12246
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

13-50057715-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057715
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057715
    reference: chr 13
allele count: 1
allele frequency: 1.109114704642754e-5
allele num: 90162
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1518+16T>A
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1482+16T>A
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1482+16T>A
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5298
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3888
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8285
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

12-124821373-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821373
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821373
    reference: chr 12
allele count: 21
allele frequency: 1.766427778338549e-4
allele num: 118884
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6041C>T
  hgvsp: ENSP00000384018.1:p.Ser2014Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.6014C>T
  hgvsp: ENSP00000380513.1:p.Ser2005Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6062C>T
  hgvsp: ENSP00000348551.3:p.Ser2021Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4724C>T
  hgvsp: ENSP00000385618.2:p.Ser1575Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.6011C>T
  hgvsp: ENSP00000400281.2:p.Ser2004Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.6011C>T
  hgvsp: ENSP00000384202.1:p.Ser2004Leu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27440
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser2014Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

12-124821374-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821374
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821374
    reference: chr 12
allele count: 1
allele frequency: 8.411419342899921e-6
allele num: 118886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.6010T>A
  hgvsp: ENSP00000400281.2:p.Ser2004Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.6010T>A
  hgvsp: ENSP00000384202.1:p.Ser2004Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.6013T>A
  hgvsp: ENSP00000380513.1:p.Ser2005Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6040T>A
  hgvsp: ENSP00000384018.1:p.Ser2014Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6061T>A
  hgvsp: ENSP00000348551.3:p.Ser2021Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4723T>A
  hgvsp: ENSP00000385618.2:p.Ser1575Thr
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12532
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser2014Thr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

12-124821375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821375
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821375
    reference: chr 12
allele count: 1
allele frequency: 8.422754914677492e-6
allele num: 118726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.6009C>T
  hgvsp: ENST00000429285.2:c.6009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6060C>T
  hgvsp: ENST00000356219.3:c.6060C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6039C>T
  hgvsp: ENST00000405201.1:c.6039C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.6009C>T
  hgvsp: ENST00000404621.1:c.6009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4722C>T
  hgvsp: ENST00000404121.2:c.4722C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.6012C>T
  hgvsp: ENST00000397355.1:c.6012C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala2013Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

12-124821381-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821381
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821381
    reference: chr 12
allele count: 2
allele frequency: 1.690645657576629e-5
allele num: 118298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.6003A>T
  hgvsp: ENST00000404621.1:c.6003A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4716A>T
  hgvsp: ENST00000404121.2:c.4716A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.6003A>T
  hgvsp: ENST00000429285.2:c.6003A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6054A>T
  hgvsp: ENST00000356219.3:c.6054A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6033A>T
  hgvsp: ENST00000405201.1:c.6033A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.6006A>T
  hgvsp: ENST00000397355.1:c.6006A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8614
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro2011Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

12-124821383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821383
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821383
    reference: chr 12
allele count: 1
allele frequency: 8.477593719798572e-6
allele num: 117958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6052C>T
  hgvsp: ENSP00000348551.3:p.Pro2018Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.6001C>T
  hgvsp: ENSP00000384202.1:p.Pro2001Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4714C>T
  hgvsp: ENSP00000385618.2:p.Pro1572Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6031C>T
  hgvsp: ENSP00000384018.1:p.Pro2011Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.6004C>T
  hgvsp: ENSP00000380513.1:p.Pro2002Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.6001C>T
  hgvsp: ENSP00000400281.2:p.Pro2001Ser
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39551
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro2011Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

12-124821384-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821384
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821384
    reference: chr 12
allele count: 12
allele frequency: 1.017742646809377e-4
allele num: 117908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.6003G>A
  hgvsp: ENST00000397355.1:c.6003G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.6000G>A
  hgvsp: ENST00000429285.2:c.6000G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6030G>A
  hgvsp: ENST00000405201.1:c.6030G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.6000G>A
  hgvsp: ENST00000404621.1:c.6000G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6051G>A
  hgvsp: ENST00000356219.3:c.6051G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4713G>A
  hgvsp: ENST00000404121.2:c.4713G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala2010Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

13-50057717-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057717
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057717
    reference: chr 13
allele count: 2
allele frequency: 2.197367553670703e-5
allele num: 91018
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1518+18T>G
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1482+18T>G
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1482+18T>G
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5942
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 27468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7890
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

13-50057718-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057718
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057718
    reference: chr 13
allele count: 1
allele frequency: 1.113709767234659e-5
allele num: 89790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1482+19A>T
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1482+19A>T
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1518+19A>T
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2877
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7223
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

13-50057719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057719
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057719
    reference: chr 13
allele count: 1
allele frequency: 1.124050177599928e-5
allele num: 88964
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1518+20G>A
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1482+20G>A
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1482+20G>A
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20267
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6886
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6801
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

13-50057720-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50057720
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 50057720
    reference: chr 13
allele count: 1
allele frequency: 1.141474328242358e-5
allele num: 87606
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000326477
  ensembl transcript: ENST00000317257
  gene symbol: SETDB2
  hgvsc: ENST00000317257.8:c.1518+21T>G
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000258672
  ensembl transcript: ENST00000258672
  gene symbol: SETDB2
  hgvsc: ENST00000258672.5:c.1482+21T>G
  variant of: http://identifiers.org/hgnc/20263
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136169
  ensembl protein: ENSP00000346175
  ensembl transcript: ENST00000354234
  gene symbol: SETDB2
  hgvsc: ENST00000354234.4:c.1482+21T>G
  variant of: http://identifiers.org/hgnc/20263
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7914
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

12-124821385-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821385
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821385
    reference: chr 12
allele count: 3
allele frequency: 2.545652026339013e-5
allele num: 117848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.6002C>T
  hgvsp: ENSP00000380513.1:p.Ala2001Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6050C>T
  hgvsp: ENSP00000348551.3:p.Ala2017Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5999C>T
  hgvsp: ENSP00000400281.2:p.Ala2000Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5999C>T
  hgvsp: ENSP00000384202.1:p.Ala2000Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4712C>T
  hgvsp: ENSP00000385618.2:p.Ala1571Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6029C>T
  hgvsp: ENSP00000384018.1:p.Ala2010Val
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11762
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39579
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8499
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala2010Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

12-124821385-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821385
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821385
    reference: chr 12
allele count: 2
allele frequency: 1.697101350892675e-5
allele num: 117848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6050C>G
  hgvsp: ENSP00000348551.3:p.Ala2017Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5999C>G
  hgvsp: ENSP00000384202.1:p.Ala2000Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4712C>G
  hgvsp: ENSP00000385618.2:p.Ala1571Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.6002C>G
  hgvsp: ENSP00000380513.1:p.Ala2001Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5999C>G
  hgvsp: ENSP00000400281.2:p.Ala2000Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6029C>G
  hgvsp: ENSP00000384018.1:p.Ala2010Gly
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8499
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala2010Gly
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

12-124821386-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821386
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821386
    reference: chr 12
allele count: 2
allele frequency: 1.707329565826092e-5
allele num: 117142
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4711G>C
  hgvsp: ENSP00000385618.2:p.Ala1571Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5998G>C
  hgvsp: ENSP00000400281.2:p.Ala2000Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.6001G>C
  hgvsp: ENSP00000380513.1:p.Ala2001Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6049G>C
  hgvsp: ENSP00000348551.3:p.Ala2017Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6028G>C
  hgvsp: ENSP00000384018.1:p.Ala2010Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5998G>C
  hgvsp: ENSP00000384202.1:p.Ala2000Pro
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8297
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala2010Pro
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

12-124821387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821387
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821387
    reference: chr 12
allele count: 1
allele frequency: 8.536647829130458e-6
allele num: 117142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6048G>A
  hgvsp: ENST00000356219.3:c.6048G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6027G>A
  hgvsp: ENST00000405201.1:c.6027G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.6000G>A
  hgvsp: ENST00000397355.1:c.6000G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5997G>A
  hgvsp: ENST00000404621.1:c.5997G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4710G>A
  hgvsp: ENST00000404121.2:c.4710G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5997G>A
  hgvsp: ENST00000429285.2:c.5997G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8301
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro2009Pro
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

12-124821388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821388
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821388
    reference: chr 12
allele count: 8
allele frequency: 6.836788760319279e-5
allele num: 117014
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6026C>T
  hgvsp: ENSP00000384018.1:p.Pro2009Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4709C>T
  hgvsp: ENSP00000385618.2:p.Pro1570Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6047C>T
  hgvsp: ENSP00000348551.3:p.Pro2016Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5999C>T
  hgvsp: ENSP00000380513.1:p.Pro2000Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5996C>T
  hgvsp: ENSP00000400281.2:p.Pro1999Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5996C>T
  hgvsp: ENSP00000384202.1:p.Pro1999Leu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro2009Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

12-124821390-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821390
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821390
    reference: chr 12
allele count: 11
allele frequency: 9.399781241454745e-5
allele num: 117024
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6024G>A
  hgvsp: ENST00000405201.1:c.6024G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4707G>A
  hgvsp: ENST00000404121.2:c.4707G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5997G>A
  hgvsp: ENST00000397355.1:c.5997G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6045G>A
  hgvsp: ENST00000356219.3:c.6045G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5994G>A
  hgvsp: ENST00000429285.2:c.5994G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5994G>A
  hgvsp: ENST00000404621.1:c.5994G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro2008Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

12-124821391-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821391
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821391
    reference: chr 12
allele count: 8
allele frequency: 6.835153192870936e-5
allele num: 117042
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6023C>T
  hgvsp: ENSP00000384018.1:p.Pro2008Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6044C>T
  hgvsp: ENSP00000348551.3:p.Pro2015Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5993C>T
  hgvsp: ENSP00000400281.2:p.Pro1998Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5993C>T
  hgvsp: ENSP00000384202.1:p.Pro1998Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5996C>T
  hgvsp: ENSP00000380513.1:p.Pro1999Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4706C>T
  hgvsp: ENSP00000385618.2:p.Pro1569Leu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro2008Leu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

12-124821393-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821393
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821393
    reference: chr 12
allele count: 1
allele frequency: 8.568833439015613e-6
allele num: 116702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6042C>A
  hgvsp: ENSP00000348551.3:p.Asp2014Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4704C>A
  hgvsp: ENSP00000385618.2:p.Asp1568Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6021C>A
  hgvsp: ENSP00000384018.1:p.Asp2007Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5991C>A
  hgvsp: ENSP00000400281.2:p.Asp1997Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5994C>A
  hgvsp: ENSP00000380513.1:p.Asp1998Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5991C>A
  hgvsp: ENSP00000384202.1:p.Asp1997Glu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp2007Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS

12-124821396-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821396
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821396
    reference: chr 12
allele count: 2
allele frequency: 1.717622810030917e-5
allele num: 116440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5988G>A
  hgvsp: ENST00000404621.1:c.5988G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6018G>A
  hgvsp: ENST00000405201.1:c.6018G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5988G>A
  hgvsp: ENST00000429285.2:c.5988G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6039G>A
  hgvsp: ENST00000356219.3:c.6039G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4701G>A
  hgvsp: ENST00000404121.2:c.4701G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5991G>A
  hgvsp: ENST00000397355.1:c.5991G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro2006Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

12-124821397-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821397
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821397
    reference: chr 12
allele count: 11
allele frequency: 9.470349197603141e-5
allele num: 116152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5987C>T
  hgvsp: ENSP00000384202.1:p.Pro1996Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6038C>T
  hgvsp: ENSP00000348551.3:p.Pro2013Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5987C>T
  hgvsp: ENSP00000400281.2:p.Pro1996Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4700C>T
  hgvsp: ENSP00000385618.2:p.Pro1567Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6017C>T
  hgvsp: ENSP00000384018.1:p.Pro2006Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5990C>T
  hgvsp: ENSP00000380513.1:p.Pro1997Leu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26803
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38277
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro2006Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

12-124821403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821403
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821403
    reference: chr 12
allele count: 148
allele frequency: 1.279236606911335e-3
allele num: 115694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5981C>T
  hgvsp: ENSP00000384202.1:p.Ala1994Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6011C>T
  hgvsp: ENSP00000384018.1:p.Ala2004Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5981C>T
  hgvsp: ENSP00000400281.2:p.Ala1994Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6032C>T
  hgvsp: ENSP00000348551.3:p.Ala2011Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5984C>T
  hgvsp: ENSP00000380513.1:p.Ala1995Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4694C>T
  hgvsp: ENSP00000385618.2:p.Ala1565Val
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10916
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26566
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12229
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8021
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala2004Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

12-124821403-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821403
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821403
    reference: chr 12
allele count: 1
allele frequency: 8.643490587238751e-6
allele num: 115694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5981C>G
  hgvsp: ENSP00000384202.1:p.Ala1994Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4694C>G
  hgvsp: ENSP00000385618.2:p.Ala1565Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5981C>G
  hgvsp: ENSP00000400281.2:p.Ala1994Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6011C>G
  hgvsp: ENSP00000384018.1:p.Ala2004Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6032C>G
  hgvsp: ENSP00000348551.3:p.Ala2011Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5984C>G
  hgvsp: ENSP00000380513.1:p.Ala1995Gly
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala2004Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

12-124821404-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821404
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821404
    reference: chr 12
allele count: 3
allele frequency: 2.595470039624176e-5
allele num: 115586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5983G>A
  hgvsp: ENSP00000380513.1:p.Ala1995Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4693G>A
  hgvsp: ENSP00000385618.2:p.Ala1565Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6031G>A
  hgvsp: ENSP00000348551.3:p.Ala2011Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5980G>A
  hgvsp: ENSP00000400281.2:p.Ala1994Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6010G>A
  hgvsp: ENSP00000384018.1:p.Ala2004Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5980G>A
  hgvsp: ENSP00000384202.1:p.Ala1994Thr
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10936
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7979
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala2004Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-124821405-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821405
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821405
    reference: chr 12
allele count: 3
allele frequency: 2.602178891124835e-5
allele num: 115288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5979C>T
  hgvsp: ENST00000404621.1:c.5979C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5982C>T
  hgvsp: ENST00000397355.1:c.5982C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4692C>T
  hgvsp: ENST00000404121.2:c.4692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6009C>T
  hgvsp: ENST00000405201.1:c.6009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6030C>T
  hgvsp: ENST00000356219.3:c.6030C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5979C>T
  hgvsp: ENST00000429285.2:c.5979C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26494
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His2003His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

12-124821413-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821413
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821413
    reference: chr 12
allele count: 5724
allele frequency: 5.013049342278118e-2
allele num: 114182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5974C>T
  hgvsp: ENSP00000380513.1:p.Pro1992Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.6001C>T
  hgvsp: ENSP00000384018.1:p.Pro2001Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5971C>T
  hgvsp: ENSP00000400281.2:p.Pro1991Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5971C>T
  hgvsp: ENSP00000384202.1:p.Pro1991Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6022C>T
  hgvsp: ENSP00000348551.3:p.Pro2008Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4684C>T
  hgvsp: ENSP00000385618.2:p.Pro1562Ser
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 461
genotype depth: GenotypeDepth
  all individuals: 10470
  bin: 3.25e1
  variant carriers: 679
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 326
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 2.25e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 3.75e1
  variant carriers: 744
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 26114
  bin: 2.75e1
  variant carriers: 560
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 761
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 1.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.75e1
  variant carriers: 628
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 7393
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36966
  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 9
hgvs: p.Pro2001Ser
num of homozygotes: 215
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

12-124821415-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821415
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821415
    reference: chr 12
allele count: 3
allele frequency: 2.636481878581221e-5
allele num: 113788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6020C>A
  hgvsp: ENSP00000348551.3:p.Ala2007Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4682C>A
  hgvsp: ENSP00000385618.2:p.Ala1561Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5969C>A
  hgvsp: ENSP00000400281.2:p.Ala1990Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5969C>A
  hgvsp: ENSP00000384202.1:p.Ala1990Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5999C>A
  hgvsp: ENSP00000384018.1:p.Ala2000Glu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5972C>A
  hgvsp: ENSP00000380513.1:p.Ala1991Glu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25950
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11905
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7650
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala2000Glu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

12-124821416-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821416
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821416
    reference: chr 12
allele count: 5696
allele frequency: 5.051347085010908e-2
allele num: 112762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5968G>A
  hgvsp: ENSP00000400281.2:p.Ala1990Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6019G>A
  hgvsp: ENSP00000348551.3:p.Ala2007Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5971G>A
  hgvsp: ENSP00000380513.1:p.Ala1991Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5998G>A
  hgvsp: ENSP00000384018.1:p.Ala2000Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4681G>A
  hgvsp: ENSP00000385618.2:p.Ala1561Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5968G>A
  hgvsp: ENSP00000384202.1:p.Ala1990Thr
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 7.5e0
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.25e1
  variant carriers: 396
genotype depth: GenotypeDepth
  all individuals: 25418
  bin: 2.75e1
  variant carriers: 627
genotype depth: GenotypeDepth
  all individuals: 11659
  bin: 2.25e1
  variant carriers: 468
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 3.25e1
  variant carriers: 695
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 1.25e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 1.75e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 3.75e1
  variant carriers: 762
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.25e1
  variant carriers: 788
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 589
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6903
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.25e1
  variant carriers: 6
hgvs: p.Ala2000Thr
num of homozygotes: 211
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

12-124821417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821417
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821417
    reference: chr 12
allele count: 4
allele frequency: 3.566779020205803e-5
allele num: 112146
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5997C>T
  hgvsp: ENST00000405201.1:c.5997C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5970C>T
  hgvsp: ENST00000397355.1:c.5970C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6018C>T
  hgvsp: ENST00000356219.3:c.6018C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4680C>T
  hgvsp: ENST00000404121.2:c.4680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5967C>T
  hgvsp: ENST00000404621.1:c.5967C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5967C>T
  hgvsp: ENST00000429285.2:c.5967C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu1999Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

12-124821419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821419
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821419
    reference: chr 12
allele count: 1
allele frequency: 8.941504676406945e-6
allele num: 111838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5968C>T
  hgvsp: ENSP00000380513.1:p.Leu1990Phe
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6016C>T
  hgvsp: ENSP00000348551.3:p.Leu2006Phe
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5995C>T
  hgvsp: ENSP00000384018.1:p.Leu1999Phe
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5965C>T
  hgvsp: ENSP00000400281.2:p.Leu1989Phe
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4678C>T
  hgvsp: ENSP00000385618.2:p.Leu1560Phe
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5965C>T
  hgvsp: ENSP00000384202.1:p.Leu1989Phe
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5611
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu1999Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

12-124821420-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821420
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821420
    reference: chr 12
allele count: 3
allele frequency: 2.694304240834875e-5
allele num: 111346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5994C>A
  hgvsp: ENSP00000384018.1:p.Asn1998Lys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4677C>A
  hgvsp: ENSP00000385618.2:p.Asn1559Lys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5964C>A
  hgvsp: ENSP00000400281.2:p.Asn1988Lys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5964C>A
  hgvsp: ENSP00000384202.1:p.Asn1988Lys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5967C>A
  hgvsp: ENSP00000380513.1:p.Asn1989Lys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6015C>A
  hgvsp: ENSP00000348551.3:p.Asn2005Lys
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9991
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27003
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38677
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5959
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn1998Lys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

12-124821421-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821421
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821421
    reference: chr 12
allele count: 1
allele frequency: 8.982950360216309e-6
allele num: 111322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5963A>G
  hgvsp: ENSP00000400281.2:p.Asn1988Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5993A>G
  hgvsp: ENSP00000384018.1:p.Asn1998Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5963A>G
  hgvsp: ENSP00000384202.1:p.Asn1988Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6014A>G
  hgvsp: ENSP00000348551.3:p.Asn2005Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5966A>G
  hgvsp: ENSP00000380513.1:p.Asn1989Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4676A>G
  hgvsp: ENSP00000385618.2:p.Asn1559Ser
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7470
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn1998Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

12-124821426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821426
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821426
    reference: chr 12
allele count: 4
allele frequency: 3.725574204124211e-5
allele num: 107366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5961G>A
  hgvsp: ENST00000397355.1:c.5961G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5958G>A
  hgvsp: ENST00000429285.2:c.5958G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4671G>A
  hgvsp: ENST00000404121.2:c.4671G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6009G>A
  hgvsp: ENST00000356219.3:c.6009G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5958G>A
  hgvsp: ENST00000404621.1:c.5958G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5988G>A
  hgvsp: ENST00000405201.1:c.5988G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24604
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6462
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34366
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala1996Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

12-124821427-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821427
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821427
    reference: chr 12
allele count: 1
allele frequency: 9.315323707498835e-6
allele num: 107350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5960C>T
  hgvsp: ENSP00000380513.1:p.Ala1987Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5957C>T
  hgvsp: ENSP00000384202.1:p.Ala1986Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6008C>T
  hgvsp: ENSP00000348551.3:p.Ala2003Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5957C>T
  hgvsp: ENSP00000400281.2:p.Ala1986Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4670C>T
  hgvsp: ENSP00000385618.2:p.Ala1557Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5987C>T
  hgvsp: ENSP00000384018.1:p.Ala1996Val
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11491
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34927
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6398
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala1996Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-124821430-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821430
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821430
    reference: chr 12
allele count: 6
allele frequency: 5.671506352087114e-5
allele num: 105792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5954C>A
  hgvsp: ENSP00000384202.1:p.Pro1985His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5984C>A
  hgvsp: ENSP00000384018.1:p.Pro1995His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.6005C>A
  hgvsp: ENSP00000348551.3:p.Pro2002His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5954C>A
  hgvsp: ENSP00000400281.2:p.Pro1985His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5957C>A
  hgvsp: ENSP00000380513.1:p.Pro1986His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4667C>A
  hgvsp: ENSP00000385618.2:p.Pro1556His
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11281
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Pro1995His
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

12-124821436-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821436
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821436
    reference: chr 12
allele count: 6
allele frequency: 5.876591576885406e-5
allele num: 102100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5951G>A
  hgvsp: ENSP00000380513.1:p.Arg1984His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5999G>A
  hgvsp: ENSP00000348551.3:p.Arg2000His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4661G>A
  hgvsp: ENSP00000385618.2:p.Arg1554His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5978G>A
  hgvsp: ENSP00000384018.1:p.Arg1993His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5948G>A
  hgvsp: ENSP00000400281.2:p.Arg1983His
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5948G>A
  hgvsp: ENSP00000384202.1:p.Arg1983His
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21399
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11191
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13047
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Arg1993His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

12-124821437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821437
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821437
    reference: chr 12
allele count: 14
allele frequency: 1.401710086305293e-4
allele num: 99878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5998C>T
  hgvsp: ENSP00000348551.3:p.Arg2000Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5950C>T
  hgvsp: ENSP00000380513.1:p.Arg1984Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5947C>T
  hgvsp: ENSP00000384202.1:p.Arg1983Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5947C>T
  hgvsp: ENSP00000400281.2:p.Arg1983Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5977C>T
  hgvsp: ENSP00000384018.1:p.Arg1993Cys
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4660C>T
  hgvsp: ENSP00000385618.2:p.Arg1554Cys
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19728
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11032
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14832
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg1993Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

12-124821440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821440
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821440
    reference: chr 12
allele count: 2
allele frequency: 2.043318348998774e-5
allele num: 97880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5944G>A
  hgvsp: ENSP00000384202.1:p.Ala1982Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5974G>A
  hgvsp: ENSP00000384018.1:p.Ala1992Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4657G>A
  hgvsp: ENSP00000385618.2:p.Ala1553Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5995G>A
  hgvsp: ENSP00000348551.3:p.Ala1999Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5947G>A
  hgvsp: ENSP00000380513.1:p.Ala1983Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5944G>A
  hgvsp: ENSP00000400281.2:p.Ala1982Thr
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18733
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4070
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15998
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala1992Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

12-124821441-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821441
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821441
    reference: chr 12
allele count: 4
allele frequency: 4.087054255645244e-5
allele num: 97870
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5973C>T
  hgvsp: ENST00000405201.1:c.5973C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5994C>T
  hgvsp: ENST00000356219.3:c.5994C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5946C>T
  hgvsp: ENST00000397355.1:c.5946C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5943C>T
  hgvsp: ENST00000404621.1:c.5943C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4656C>T
  hgvsp: ENST00000404121.2:c.4656C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5943C>T
  hgvsp: ENST00000429285.2:c.5943C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11745
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18745
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile1991Ile
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-124821443-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821443
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821443
    reference: chr 12
allele count: 1
allele frequency: 1.041341247526815e-5
allele num: 96030
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5941A>G
  hgvsp: ENSP00000400281.2:p.Ile1981Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5992A>G
  hgvsp: ENSP00000348551.3:p.Ile1998Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5944A>G
  hgvsp: ENSP00000380513.1:p.Ile1982Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5971A>G
  hgvsp: ENSP00000384018.1:p.Ile1991Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4654A>G
  hgvsp: ENSP00000385618.2:p.Ile1552Val
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5941A>G
  hgvsp: ENSP00000384202.1:p.Ile1981Val
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17666
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile1991Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

12-124821449-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821449
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821449
    reference: chr 12
allele count: 15
allele frequency: 1.623692927193609e-4
allele num: 92382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5935G>A
  hgvsp: ENSP00000384202.1:p.Ala1979Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5938G>A
  hgvsp: ENSP00000380513.1:p.Ala1980Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5965G>A
  hgvsp: ENSP00000384018.1:p.Ala1989Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5986G>A
  hgvsp: ENSP00000348551.3:p.Ala1996Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4648G>A
  hgvsp: ENSP00000385618.2:p.Ala1550Thr
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5935G>A
  hgvsp: ENSP00000400281.2:p.Ala1979Thr
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14833
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12768
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19670
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala1989Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

12-124821449-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821449
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821449
    reference: chr 12
allele count: 1
allele frequency: 1.082461951462406e-5
allele num: 92382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4648G>C
  hgvsp: ENSP00000385618.2:p.Ala1550Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5965G>C
  hgvsp: ENSP00000384018.1:p.Ala1989Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5935G>C
  hgvsp: ENSP00000400281.2:p.Ala1979Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5938G>C
  hgvsp: ENSP00000380513.1:p.Ala1980Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5935G>C
  hgvsp: ENSP00000384202.1:p.Ala1979Pro
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5986G>C
  hgvsp: ENSP00000348551.3:p.Ala1996Pro
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala1989Pro
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

12-124821450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821450
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821450
    reference: chr 12
allele count: 1
allele frequency: 1.091893780573026e-5
allele num: 91584
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5964C>T
  hgvsp: ENST00000405201.1:c.5964C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5937C>T
  hgvsp: ENST00000397355.1:c.5937C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4647C>T
  hgvsp: ENST00000404121.2:c.4647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5934C>T
  hgvsp: ENST00000429285.2:c.5934C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5985C>T
  hgvsp: ENST00000356219.3:c.5985C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5934C>T
  hgvsp: ENST00000404621.1:c.5934C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11619
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13098
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His1988His
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-124821461-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821461
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821461
    reference: chr 12
allele count: 1
allele frequency: 1.195114372445443e-5
allele num: 83674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5974G>T
  hgvsp: ENSP00000348551.3:p.Val1992Phe
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5953G>T
  hgvsp: ENSP00000384018.1:p.Val1985Phe
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5923G>T
  hgvsp: ENSP00000384202.1:p.Val1975Phe
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5923G>T
  hgvsp: ENSP00000400281.2:p.Val1975Phe
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5926G>T
  hgvsp: ENSP00000380513.1:p.Val1976Phe
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4636G>T
  hgvsp: ENSP00000385618.2:p.Val1546Phe
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10486
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25093
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16608
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val1985Phe
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

12-124821466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821466
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821466
    reference: chr 12
allele count: 2
allele frequency: 2.563839606194236e-5
allele num: 78008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5918C>T
  hgvsp: ENSP00000400281.2:p.Pro1973Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5921C>T
  hgvsp: ENSP00000380513.1:p.Pro1974Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4631C>T
  hgvsp: ENSP00000385618.2:p.Pro1544Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5918C>T
  hgvsp: ENSP00000384202.1:p.Pro1973Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5969C>T
  hgvsp: ENSP00000348551.3:p.Pro1990Leu
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5948C>T
  hgvsp: ENSP00000384018.1:p.Pro1983Leu
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16193
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3801
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3786
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro1983Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-124821469-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821469
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821469
    reference: chr 12
allele count: 1
allele frequency: 1.315754848556617e-5
allele num: 76002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5966T>G
  hgvsp: ENSP00000348551.3:p.Val1989Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5915T>G
  hgvsp: ENSP00000384202.1:p.Val1972Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5945T>G
  hgvsp: ENSP00000384018.1:p.Val1982Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5915T>G
  hgvsp: ENSP00000400281.2:p.Val1972Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5918T>G
  hgvsp: ENSP00000380513.1:p.Val1973Gly
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4628T>G
  hgvsp: ENSP00000385618.2:p.Val1543Gly
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3818
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27703
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3763
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val1982Gly
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

12-124821476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821476
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821476
    reference: chr 12
allele count: 1
allele frequency: 1.421949207974291e-5
allele num: 70326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5908C>T
  hgvsp: ENSP00000400281.2:p.Pro1970Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5911C>T
  hgvsp: ENSP00000380513.1:p.Pro1971Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4621C>T
  hgvsp: ENSP00000385618.2:p.Pro1541Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5959C>T
  hgvsp: ENSP00000348551.3:p.Pro1987Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5908C>T
  hgvsp: ENSP00000384202.1:p.Pro1970Ser
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5938C>T
  hgvsp: ENSP00000384018.1:p.Pro1980Ser
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5073
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro1980Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-124821477-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821477
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821477
    reference: chr 12
allele count: 1
allele frequency: 1.488892859269847e-5
allele num: 67164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5958G>T
  hgvsp: ENST00000356219.3:c.5958G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5907G>T
  hgvsp: ENST00000429285.2:c.5907G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5937G>T
  hgvsp: ENST00000405201.1:c.5937G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5910G>T
  hgvsp: ENST00000397355.1:c.5910G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4620G>T
  hgvsp: ENST00000404121.2:c.4620G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5907G>T
  hgvsp: ENST00000404621.1:c.5907G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27801
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5529
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg1979Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

12-124821477-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821477
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821477
    reference: chr 12
allele count: 1
allele frequency: 1.488892859269847e-5
allele num: 67164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5910G>A
  hgvsp: ENST00000397355.1:c.5910G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5937G>A
  hgvsp: ENST00000405201.1:c.5937G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4620G>A
  hgvsp: ENST00000404121.2:c.4620G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5907G>A
  hgvsp: ENST00000429285.2:c.5907G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5907G>A
  hgvsp: ENST00000404621.1:c.5907G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5958G>A
  hgvsp: ENST00000356219.3:c.5958G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4090
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27801
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg1979Arg
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-124821479-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821479
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821479
    reference: chr 12
allele count: 6
allele frequency: 9.195402298850575e-5
allele num: 65250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4618C>T
  hgvsp: ENSP00000385618.2:p.Arg1540Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5905C>T
  hgvsp: ENSP00000400281.2:p.Arg1969Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5935C>T
  hgvsp: ENSP00000384018.1:p.Arg1979Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5908C>T
  hgvsp: ENSP00000380513.1:p.Arg1970Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5905C>T
  hgvsp: ENSP00000384202.1:p.Arg1969Trp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5956C>T
  hgvsp: ENSP00000348551.3:p.Arg1986Trp
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18089
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg1979Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

12-124821480-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821480
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821480
    reference: chr 12
allele count: 1
allele frequency: 1.530784067599424e-5
allele num: 65326
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5934C>T
  hgvsp: ENST00000405201.1:c.5934C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5904C>T
  hgvsp: ENST00000404621.1:c.5904C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5955C>T
  hgvsp: ENST00000356219.3:c.5955C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4617C>T
  hgvsp: ENST00000404121.2:c.4617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5904C>T
  hgvsp: ENST00000429285.2:c.5904C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5907C>T
  hgvsp: ENST00000397355.1:c.5907C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18008
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4021
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro1978Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/12-124821483-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821483
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821483
    reference: chr 12
allele count: 353
allele frequency: 5.622093393642097e-3
allele num: 62788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4614G>T
  hgvsp: ENSP00000385618.2:p.Glu1538Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5952G>T
  hgvsp: ENSP00000348551.3:p.Glu1984Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5901G>T
  hgvsp: ENSP00000400281.2:p.Glu1967Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5931G>T
  hgvsp: ENSP00000384018.1:p.Glu1977Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5904G>T
  hgvsp: ENSP00000380513.1:p.Glu1968Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5901G>T
  hgvsp: ENSP00000384202.1:p.Glu1967Asp
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17685
  bin: 1.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 1.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20704
  bin: 7.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 2.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 2.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3898
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6193
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28241
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu1977Asp
num of homozygotes: 9
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

12-124821483-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821483
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821483
    reference: chr 12
allele count: 3
allele frequency: 4.777983054086768e-5
allele num: 62788
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5901G>C
  hgvsp: ENSP00000384202.1:p.Glu1967Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4614G>C
  hgvsp: ENSP00000385618.2:p.Glu1538Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5952G>C
  hgvsp: ENSP00000348551.3:p.Glu1984Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5901G>C
  hgvsp: ENSP00000400281.2:p.Glu1967Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5904G>C
  hgvsp: ENSP00000380513.1:p.Glu1968Asp
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5931G>C
  hgvsp: ENSP00000384018.1:p.Glu1977Asp
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3971
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu1977Asp
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

12-124821486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124821486
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 124821486
    reference: chr 12
allele count: 1
allele frequency: 1.666111296234588e-5
allele num: 60020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000348551
  ensembl transcript: ENST00000356219
  gene symbol: NCOR2
  hgvsc: ENST00000356219.3:c.5949G>A
  hgvsp: ENST00000356219.3:c.5949G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000400281
  ensembl transcript: ENST00000429285
  gene symbol: NCOR2
  hgvsc: ENST00000429285.2:c.5898G>A
  hgvsp: ENST00000429285.2:c.5898G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384202
  ensembl transcript: ENST00000404621
  gene symbol: NCOR2
  hgvsc: ENST00000404621.1:c.5898G>A
  hgvsp: ENST00000404621.1:c.5898G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000385618
  ensembl transcript: ENST00000404121
  gene symbol: NCOR2
  hgvsc: ENST00000404121.2:c.4611G>A
  hgvsp: ENST00000404121.2:c.4611G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000380513
  ensembl transcript: ENST00000397355
  gene symbol: NCOR2
  hgvsc: ENST00000397355.1:c.5901G>A
  hgvsp: ENST00000397355.1:c.5901G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196498
  ensembl protein: ENSP00000384018
  ensembl transcript: ENST00000405201
  gene symbol: NCOR2
  hgvsc: ENST00000405201.1:c.5928G>A
  hgvsp: ENST00000405201.1:c.5928G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7673
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17304
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3938
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6563
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser1976Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 985
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.574621959237344e-5
allele num: 30420
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.316829075585989e-4
allele num: 7594
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 8.407600470825626e-5
allele num: 11894
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.734e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 2
allele frequency: 3.360215053763441e-4
allele num: 5952
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12054
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7878
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 31790
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3888
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Other
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
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SIO_000300: 9.67875e5

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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FS
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MQRankSum
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VQSLOD
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 658
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 1.030078285949732e-4
allele num: 9708
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 43230
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South Asian
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BaseQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
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MQRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58274
num of homozygotes: 0

Latino
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allele count: 0
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allele num: 10704
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East Asian
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allele count: 2
allele frequency: 2.431906614785992e-4
allele num: 8224
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African
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allele frequency: 0.0e0
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South Asian
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MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.894048e6

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.744e1

FS
type: SiteQuality
SIO_000300: 5.97e-1

QD
type: SiteQuality
SIO_000300: 2.076e1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 32020

South Asian
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allele count: 5616
allele frequency: 3.753508889185938e-1
allele num: 14962
num of homozygotes: 1030

East Asian
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allele count: 4210
allele frequency: 5.119163424124513e-1
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Latino
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allele count: 5152
allele frequency: 4.813153961136024e-1
allele num: 10704
num of homozygotes: 1160

European (Finnish)
type: Population
allele count: 3327
allele frequency: 5.578470824949698e-1
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num of homozygotes: 886

Other
type: Population
allele count: 464
allele frequency: 5.576923076923077e-1
allele num: 832
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African
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allele count: 4767
allele frequency: 5.29196269982238e-1
allele num: 9008
num of homozygotes: 1193

European (Non-Finnish)
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allele count: 33611
allele frequency: 5.767752342382537e-1
allele num: 58274
num of homozygotes: 9141

FS
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.71e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 2.076e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.744e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 1.894048e6

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14742
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10548
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5830
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55450
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.571071e6

MQRankSum
type: SiteQuality
SIO_000300: -1.586e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 7.189072609633358e-5
allele num: 55640
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 1.382e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.745e1

DP
type: SiteQuality
SIO_000300: 1.580915e6

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.700616456714018e-5
allele num: 14924
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55638
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10606
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.391e0

DP
type: SiteQuality
SIO_000300: 1.584271e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10580
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8262
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5868
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.81310512383508e-5
allele num: 55154
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
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MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.459e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 5.669e1

DP
type: SiteQuality
SIO_000300: 1.588923e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.8627524029506e-5
allele num: 53684
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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QD
type: SiteQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

Latino
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Other
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allele frequency: 0.0e0
allele num: 778
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.75219446320054e-5
allele num: 14810
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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MQRankSum
type: SiteQuality
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DP
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MQ
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

East Asian
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Latino
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
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FS
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QD
type: SiteQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele num: 52380
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Other
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South Asian
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European (Finnish)
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Latino
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num of homozygotes: 0

East Asian
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African
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QD
type: SiteQuality
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
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DP
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Latino
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European (Finnish)
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allele frequency: 1.766160367361356e-4
allele num: 5662
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.909708960354442e-5
allele num: 52364
num of homozygotes: 0

East Asian
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African
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Other
type: Population
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FS
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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SIO_000300: 1.510323e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

MQ
type: SiteQuality
SIO_000300: 5.762e1

VQSLOD
type: SiteQuality
SIO_000300: -1.169e0

GenotypeQuality
all individuals: 1105
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.929310078715851e-5
allele num: 51832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.423845e6

MQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

QD
type: SiteQuality
SIO_000300: 4.9e-1

GenotypeQuality
all individuals: 3369
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.21300339640951e-4
allele num: 8244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: -5.303e-1

MQ
type: SiteQuality
SIO_000300: 5.659e1

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

DP
type: SiteQuality
SIO_000300: 1.409673e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.455e0

FS
type: SiteQuality
SIO_000300: 6.371e0

GenotypeQuality
all individuals: 3339
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.967342120794806e-5
allele num: 50830
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.371e0

QD
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.303e-1

MQ
type: SiteQuality
SIO_000300: 5.659e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

DP
type: SiteQuality
SIO_000300: 1.409673e6

GenotypeQuality
all individuals: 805
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.041649652919559e-4
allele num: 4898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48402
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

QD
type: SiteQuality
SIO_000300: 6.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.735e0

VQSLOD
type: SiteQuality
SIO_000300: -1.469e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

FS
type: SiteQuality
SIO_000300: 6.628e0

MQ
type: SiteQuality
SIO_000300: 5.748e1

DP
type: SiteQuality
SIO_000300: 1.333509e6

GenotypeQuality
all individuals: 2359
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5210
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.599428125812321e-4
allele num: 7694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.104e1

DP
type: SiteQuality
SIO_000300: 1.308993e6

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.743e0

VQSLOD
type: SiteQuality
SIO_000300: 2.87e-1

FS
type: SiteQuality
SIO_000300: 4.529e0

GenotypeQuality
all individuals: 338
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48052
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14104
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.848e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

QD
type: SiteQuality
SIO_000300: 8.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.306543e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.175521037288431e-5
allele num: 45966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13868
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.248815e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.759e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 2.59e0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.045806316670153e-4
allele num: 9562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65352
num of homozygotes: 0

East Asian
type: Population
allele count: 19
allele frequency: 2.214968524131499e-3
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.094588005850804e-5
allele num: 16408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.246e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 2.359e0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.196e0

DP
type: SiteQuality
SIO_000300: 1.708409e6

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 1806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
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variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8755
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530362389813908e-5
allele num: 65344
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.707333e6

MQ
type: SiteQuality
SIO_000300: 5.907e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.126e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.072e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.677e1

GenotypeQuality
all individuals: 1992
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
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variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.102770657878677e-5
allele num: 16386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

QD
type: SiteQuality
SIO_000300: 6.33e0

MQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 3.472e0

VQSLOD
type: SiteQuality
SIO_000300: -8.205e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

DP
type: SiteQuality
SIO_000300: 1.703919e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 350
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GenotypeQuality
all individuals: 388
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variant carriers: 0

GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 281
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39909
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.34246896228625e-4
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64996
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

DP
type: SiteQuality
SIO_000300: 1.695405e6

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

FS
type: SiteQuality
SIO_000300: 7.546e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.196e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.63e-1

GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
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GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 1779
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GenotypeQuality
all individuals: 150
bin: 4.75e1
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GenotypeQuality
all individuals: 952
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8494
bin: 6.75e1
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GenotypeQuality
all individuals: 2945
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64842
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.023e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.628e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.62e-1

MQ
type: SiteQuality
SIO_000300: 5.881e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.207e0

FS
type: SiteQuality
SIO_000300: 7.636e0

DP
type: SiteQuality
SIO_000300: 1.689092e6

QD
type: SiteQuality
SIO_000300: 1.208e1

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.409090909090909e-3
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.225616921269095e-4
allele num: 8510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.085657862256233e-5
allele num: 64816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.92e-1

QD
type: SiteQuality
SIO_000300: 1.271e1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

DP
type: SiteQuality
SIO_000300: 1.689327e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

GenotypeQuality
all individuals: 352
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.329379167027448e-5
allele num: 46196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.642e0

DP
type: SiteQuality
SIO_000300: 1.225504e6

QD
type: SiteQuality
SIO_000300: 9.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.661e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.235e0

MQRankSum
type: SiteQuality
SIO_000300: -1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.531e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

MQ
type: SiteQuality
SIO_000300: 5.641e1

GenotypeQuality
all individuals: 3301
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.994415636218588e-4
allele num: 5014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

VQSLOD
type: SiteQuality
SIO_000300: -1.9e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 5.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.504e0

DP
type: SiteQuality
SIO_000300: 1.216392e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.25268349289237e-5
allele num: 13788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44942
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.348e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

DP
type: SiteQuality
SIO_000300: 1.208759e6

VQSLOD
type: SiteQuality
SIO_000300: -2.747e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1

GenotypeQuality
all individuals: 397
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.312079555425563e-5
allele num: 13676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44118
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.665e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.631e0

MQRankSum
type: SiteQuality
SIO_000300: 7.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.192133e6

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 2929
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 943
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 568
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GenotypeQuality
all individuals: 41
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.154603643525357e-5
allele num: 16248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744591765526867e-4
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

QD
type: SiteQuality
SIO_000300: 1.561e1

DP
type: SiteQuality
SIO_000300: 1.686891e6

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.138e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 1.333e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

GenotypeQuality
all individuals: 282
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variant carriers: 0

GenotypeQuality
all individuals: 385
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variant carriers: 0

GenotypeQuality
all individuals: 398
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 457
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GenotypeQuality
all individuals: 39579
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variant carriers: 0

GenotypeQuality
all individuals: 128
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variant carriers: 0

GenotypeQuality
all individuals: 1770
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variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.087182020251914e-5
allele num: 64784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.686891e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.138e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

FS
type: SiteQuality
SIO_000300: 1.333e0

QD
type: SiteQuality
SIO_000300: 1.561e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 351
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 680
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 384
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GenotypeQuality
all individuals: 930
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.105782967886204e-5
allele num: 64396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 1.2886e1

QD
type: SiteQuality
SIO_000300: 2.045e1

VQSLOD
type: SiteQuality
SIO_000300: -1.646e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

DP
type: SiteQuality
SIO_000300: 1.676583e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.750437521876094e-5
allele num: 11428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.842e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.222e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

DP
type: SiteQuality
SIO_000300: 1.676085e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38671
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GenotypeQuality
all individuals: 344
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.959087527894868e-4
allele num: 16132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64358
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.672839e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

FS
type: SiteQuality
SIO_000300: 3.134e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -3.92e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 339
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GenotypeQuality
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GenotypeQuality
all individuals: 79
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GenotypeQuality
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GenotypeQuality
all individuals: 8272
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GenotypeQuality
all individuals: 1724
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GenotypeQuality
all individuals: 1890
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GenotypeQuality
all individuals: 287
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.198859409868585e-5
allele num: 16132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.242969454025667e-4
allele num: 64362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.371354043158644e-4
allele num: 8434
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.06e-1

QD
type: SiteQuality
SIO_000300: 1.547e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.671991e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.075037626316921e-4
allele num: 9302
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.744958481613286e-4
allele num: 8430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.239618197595141e-4
allele num: 16134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553422189082549e-5
allele num: 64374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.670758e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

QD
type: SiteQuality
SIO_000300: 1.397e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

FS
type: SiteQuality
SIO_000300: 4.102e0

GenotypeQuality
all individuals: 319
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8237
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38974
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.220452848967405e-5
allele num: 16076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.96e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.029e0

QD
type: SiteQuality
SIO_000300: 1.579e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

DP
type: SiteQuality
SIO_000300: 1.662407e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38651
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8182
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.247657128576784e-5
allele num: 16006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64038
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189909566872918e-4
allele num: 8404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.0422e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.059e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

DP
type: SiteQuality
SIO_000300: 1.655992e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 5.62e0

GenotypeQuality
all individuals: 362
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2863
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 349
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 10
allele frequency: 8.802816901408451e-4
allele num: 11360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.265664160401002e-5
allele num: 15960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.532e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.687e0

DP
type: SiteQuality
SIO_000300: 1.650337e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

GenotypeQuality
all individuals: 38357
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 9.75e1
variant carriers: 148

GenotypeQuality
all individuals: 429
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

African
type: Population
allele count: 141
allele frequency: 1.531942633637549e-2
allele num: 9204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.143764343424817e-5
allele num: 63618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.4193035177656e-4
allele num: 11314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15872
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.637937e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.429e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8021
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38357
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.838607035531201e-5
allele num: 11314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

VQSLOD
type: SiteQuality
SIO_000300: 5.52e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.429e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

DP
type: SiteQuality
SIO_000300: 1.637937e6

GenotypeQuality
all individuals: 335
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2729
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.262307498106539e-4
allele num: 15844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573267046348447e-5
allele num: 63562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.713e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.923e1

VQSLOD
type: SiteQuality
SIO_000300: -8.303e-1

DP
type: SiteQuality
SIO_000300: 1.634898e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.56e0

MQRankSum
type: SiteQuality
SIO_000300: -5.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

GenotypeQuality
all individuals: 287
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 413
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38095
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.155569580309246e-5
allele num: 63380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.325110689437066e-5
allele num: 15810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.831e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

QD
type: SiteQuality
SIO_000300: 9.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.299e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.64e-1

FS
type: SiteQuality
SIO_000300: 6.636e0

DP
type: SiteQuality
SIO_000300: 1.628085e6

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 9

GenotypeQuality
all individuals: 276
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 13

GenotypeQuality
all individuals: 1499
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 5641
bin: 9.75e1
variant carriers: 5463

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3707
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 480
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 7

South Asian
type: Population
allele count: 2050
allele frequency: 1.311077001790739e-1
allele num: 15636
num of homozygotes: 154

East Asian
type: Population
allele count: 172
allele frequency: 2.080812968787805e-2
allele num: 8266
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 2595
allele frequency: 4.133218654434251e-2
allele num: 62784
num of homozygotes: 39

Latino
type: Population
allele count: 262
allele frequency: 2.331790672837309e-2
allele num: 11236
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 161
allele frequency: 2.530650738761396e-2
allele num: 6362
num of homozygotes: 1

Other
type: Population
allele count: 37
allele frequency: 4.479418886198547e-2
allele num: 826
num of homozygotes: 3

African
type: Population
allele count: 447
allele frequency: 4.927248677248677e-2
allele num: 9072
num of homozygotes: 13

DP
type: SiteQuality
SIO_000300: 1.606835e6

VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.22e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.123e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.926e1

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36902
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.792944785276074e-5
allele num: 62592
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

DP
type: SiteQuality
SIO_000300: 1.590511e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 1.207e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.36e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.905e0

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

GenotypeQuality
all individuals: 446
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 241
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 117
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5595
bin: 9.75e1
variant carriers: 5443

GenotypeQuality
all individuals: 368
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 599
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 35217
bin: 6.25e1
variant carriers: 15

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 440
bin: 8.25e1
variant carriers: 11

European (Finnish)
type: Population
allele count: 161
allele frequency: 2.55799173816333e-2
allele num: 6294
num of homozygotes: 1

Latino
type: Population
allele count: 261
allele frequency: 2.350081037277147e-2
allele num: 11106
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 2592
allele frequency: 4.180105792800929e-2
allele num: 62008
num of homozygotes: 39

Other
type: Population
allele count: 37
allele frequency: 4.545454545454546e-2
allele num: 814
num of homozygotes: 3

African
type: Population
allele count: 423
allele frequency: 4.720982142857143e-2
allele num: 8960
num of homozygotes: 11

South Asian
type: Population
allele count: 2050
allele frequency: 1.329787234042553e-1
allele num: 15416
num of homozygotes: 153

East Asian
type: Population
allele count: 172
allele frequency: 2.106810387065164e-2
allele num: 8164
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

DP
type: SiteQuality
SIO_000300: 1.569392e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

QD
type: SiteQuality
SIO_000300: 2.004e1

GenotypeQuality
all individuals: 169
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5342
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7632
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39160
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.619886137958427e-5
allele num: 15106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.852641454498399e-5
allele num: 61822
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.908e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.631e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 1.0647e1

DP
type: SiteQuality
SIO_000300: 1.488143e6

QD
type: SiteQuality
SIO_000300: 1.272e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7592
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.622323166774821e-5
allele num: 61640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15048
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e0

FS
type: SiteQuality
SIO_000300: 2.097e0

VQSLOD
type: SiteQuality
SIO_000300: 8.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 1.355e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

DP
type: SiteQuality
SIO_000300: 1.480934e6

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.389830508474576e-4
allele num: 8850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61370
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

DP
type: SiteQuality
SIO_000300: 1.470587e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.193e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 3.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.54e-1

QD
type: SiteQuality
SIO_000300: 1.362e1

GenotypeQuality
all individuals: 1136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.629938714304342e-5
allele num: 61352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.787e1

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.373e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.45e-1

FS
type: SiteQuality
SIO_000300: 9.210000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.785e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.469332e6

GenotypeQuality
all individuals: 717
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.055441340028985e-5
allele num: 59342
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.996921354603975e-5
allele num: 14292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.396e0

MQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

QD
type: SiteQuality
SIO_000300: 1.422e1

DP
type: SiteQuality
SIO_000300: 1.390779e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

VQSLOD
type: SiteQuality
SIO_000300: 9.78e-1

GenotypeQuality
all individuals: 9064
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1054
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.685828922080987e-5
allele num: 59318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.126e0

MQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.247e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.223e0

QD
type: SiteQuality
SIO_000300: 1.099e1

DP
type: SiteQuality
SIO_000300: 1.388387e6

GenotypeQuality
all individuals: 33731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.025255459485322e-4
allele num: 58522
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

QD
type: SiteQuality
SIO_000300: 1.412e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

FS
type: SiteQuality
SIO_000300: 1.663e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

DP
type: SiteQuality
SIO_000300: 1.354879e6

GenotypeQuality
all individuals: 5254
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.464875523786049e-4
allele num: 8114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.529328721677137e-5
allele num: 56668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7392
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.980590215884333e-4
allele num: 10098
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.277006e6

FS
type: SiteQuality
SIO_000300: 2.337e0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

QD
type: SiteQuality
SIO_000300: 1.207e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 863
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4722
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.75e1
variant carriers: 14

South Asian
type: Population
allele count: 2
allele frequency: 1.514692517418964e-4
allele num: 13204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.981696332060244e-4
allele num: 55508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.014816318246397e-4
allele num: 9854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5420
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.367e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

DP
type: SiteQuality
SIO_000300: 1.226524e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

QD
type: SiteQuality
SIO_000300: 1.432e1

GenotypeQuality
all individuals: 847
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26163
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.673229503379371e-5
allele num: 54448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.184727e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

QD
type: SiteQuality
SIO_000300: 1.398e1

GenotypeQuality
all individuals: 1307
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 822
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.672285263119239e-5
allele num: 54462
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.777259293824856e-5
allele num: 12858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5296
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.037559659680432e-4
allele num: 9638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

FS
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.552e1

DP
type: SiteQuality
SIO_000300: 1.180231e6

VQSLOD
type: SiteQuality
SIO_000300: 4.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.719e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

GenotypeQuality
all individuals: 114
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2337
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6938
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.92016473942658e-5
allele num: 12626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5140
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.493e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

DP
type: SiteQuality
SIO_000300: 1.140095e6

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.012e1

VQSLOD
type: SiteQuality
SIO_000300: -4.902e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

GenotypeQuality
all individuals: 675
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3238
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22198
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.130461729160211e-4
allele num: 51632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12022
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.293807641633729e-4
allele num: 9108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4872
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.349527665317139e-4
allele num: 7410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 4.296e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

DP
type: SiteQuality
SIO_000300: 1.081442e6

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

QD
type: SiteQuality
SIO_000300: 1.127e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3238
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4872
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.318083513558476e-5
allele num: 12022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51632
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

QD
type: SiteQuality
SIO_000300: 1.127e1

DP
type: SiteQuality
SIO_000300: 1.081442e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.296e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

GenotypeQuality
all individuals: 2634
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.3948959032908e-5
allele num: 11912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9026
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.167e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.52e0

DP
type: SiteQuality
SIO_000300: 1.067382e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.125037188150793e-5
allele num: 47058
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.298e0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 9.39212e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.64e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.122e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

GenotypeQuality
all individuals: 659
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27182
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.541532313002407e-5
allele num: 44038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3928
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.604e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

DP
type: SiteQuality
SIO_000300: 8.53885e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 4041
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.328614008941878e-5
allele num: 42944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3840
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 4.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQ
type: SiteQuality
SIO_000300: 5.845e1

DP
type: SiteQuality
SIO_000300: 8.31877e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -2.553e0

GenotypeQuality
all individuals: 949
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4077
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.504884524823406e-5
allele num: 39922
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: -2.698e0

FS
type: SiteQuality
SIO_000300: 2.399e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.415e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.155e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 2.678e1

DP
type: SiteQuality
SIO_000300: 7.6312e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

GenotypeQuality
all individuals: 6135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4090
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.610420799832933e-5
allele num: 38308
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.244e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

DP
type: SiteQuality
SIO_000300: 7.38642e5

VQSLOD
type: SiteQuality
SIO_000300: -5.786e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

QD
type: SiteQuality
SIO_000300: 1.736e1

GenotypeQuality
all individuals: 1104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5529
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38308
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.805706031058144e-4
allele num: 5538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3310
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

QD
type: SiteQuality
SIO_000300: 1.736e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

VQSLOD
type: SiteQuality
SIO_000300: -5.786e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 7.38642e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.244e0

GenotypeQuality
all individuals: 2220
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5912
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4009
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28010
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.75e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.674798052747018e-5
allele num: 37386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 8.179959100204499e-4
allele num: 4890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.847063169560399e-4
allele num: 5414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.383e0

QD
type: SiteQuality
SIO_000300: 1.242e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.201e0

DP
type: SiteQuality
SIO_000300: 7.23767e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.36e-1

GenotypeQuality
all individuals: 658
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3968
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28568
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5807
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 755
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.675370538819626e-5
allele num: 37378
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 7.20661e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.82e0

VQSLOD
type: SiteQuality
SIO_000300: -1.823e0

GenotypeQuality
all individuals: 3971
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2235
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 115
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1075
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 49
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 5477
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 427
bin: 9.75e1
variant carriers: 337

GenotypeQuality
all individuals: 164
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 15
bin: 9.25e1
variant carriers: 2

Latino
type: Population
allele count: 18
allele frequency: 2.840012622278321e-3
allele num: 6338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.305647840531562e-5
allele num: 36120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6932
num of homozygotes: 0

African
type: Population
allele count: 331
allele frequency: 6.385030864197531e-2
allele num: 5184
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3048
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.415458937198068e-3
allele num: 414
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

FS
type: SiteQuality
SIO_000300: 6.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.391e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 7.00279e5

GenotypeQuality
all individuals: 2100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6193
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3898
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 49
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 6.313131313131314e-4
allele num: 4752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36120
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.00279e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

QD
type: SiteQuality
SIO_000300: 1.391e1

FS
type: SiteQuality
SIO_000300: 6.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0