15-42822047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42822047
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42822047
    reference: chr 15
allele count: 2
allele frequency: 1.665001665001665e-5
allele num: 120120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.411+30G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+30G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*471+30G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+30G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.156+14495G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.570+30G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.411+30G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267-1564G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.623+30G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.986+30G>A
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7534
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

15-42822055-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42822055
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42822055
    reference: chr 15
allele count: 417
allele frequency: 3.478826709380318e-3
allele num: 119868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.156+14503C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.986+38C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.623+38C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.411+38C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+38C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*471+38C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.570+38C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.411+38C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267-1556C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+38C>T
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 14217
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 4.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 24679
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 6
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

http://identifiers.org/exac.variant/15-42822069-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42822069
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42822069
    reference: chr 15
allele count: 50
allele frequency: 4.195264385561578e-4
allele num: 119182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+52A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.156+14517A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.411+52A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.623+52A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.570+52A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.411+52A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.986+52A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267-1542A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+52A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*471+52A>C
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 24783
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13768
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21368
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

15-42823568-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823568
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823568
    reference: chr 15
allele count: 2
allele frequency: 1.705756929637527e-5
allele num: 117250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1551G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.987-43G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.412-43G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.624-43G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.412-43G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1551G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*472-43G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.571-43G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13766G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267-43G>T
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15676
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-42823572-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823572
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823572
    reference: chr 15
allele count: 1
allele frequency: 8.523405270873819e-6
allele num: 117324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.412-39T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.987-39T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.412-39T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.571-39T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1555T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.624-39T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*472-39T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13762T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1555T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267-39T>A
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15676
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7850
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

15-42823576-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823576
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823576
    reference: chr 15
allele count: 1
allele frequency: 8.508176357479537e-6
allele num: 117534
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.571-35T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.412-35T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.624-35T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.987-35T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267-35T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.412-35T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*472-35T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13758T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1559T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1559T>A
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-42823586-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823586
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823586
    reference: chr 15
allele count: 2
allele frequency: 1.692534231504832e-5
allele num: 118166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13748A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1569A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1569A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*472-25A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.571-25A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.412-25A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.412-25A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.987-25A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.624-25A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267-25A>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8226
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

15-42823591-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823591
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823591
    reference: chr 15
allele count: 2
allele frequency: 1.686283767832451e-5
allele num: 118604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.987-20A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13743A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1574A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267-20A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.571-20A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1574A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.624-20A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.412-20A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.412-20A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*472-20A>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

15-42823594-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823594
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823594
    reference: chr 15
allele count: 1
allele frequency: 8.411843876177658e-6
allele num: 118880
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.571-17T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*472-17T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.412-17T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.412-17T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1577T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.987-17T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1577T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.624-17T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13740T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267-17T>C
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15715
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-42823595-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823595
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823595
    reference: chr 15
allele count: 2
allele frequency: 1.681322191771609e-5
allele num: 118954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1578C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267-16C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.571-16C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1578C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.412-16C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13739C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.412-16C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.624-16C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.987-16C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*472-16C>A
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9054
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/15-42823599-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823599
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823599
    reference: chr 15
allele count: 1
allele frequency: 8.38335401227323e-6
allele num: 119284
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.571-12C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.412-12C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1582C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267-12C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13735C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1582C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.412-12C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*472-12C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.987-12C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.624-12C>A
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

15-42823611-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823611
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823611
    reference: chr 15
allele count: 4
allele frequency: 3.32491022742386e-5
allele num: 120304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.412G>A
  hgvsp: ENSP00000207062.1:p.Ala138Thr
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1594G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.267G>A
  hgvsp: ENST00000564153.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1594G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.987G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*472G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.412G>A
  hgvsp: ENSP00000380327.1:p.Ala138Thr
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.571G>A
  hgvsp: ENSP00000249647.3:p.Ala191Thr
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.624G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13723G>A
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15762
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala191Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

15-42823613-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823613
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823613
    reference: chr 15
allele count: 1
allele frequency: 8.302751531857658e-6
allele num: 120442
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.626T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1596T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1596T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.269T>C
  hgvsp: ENSP00000455339.1:p.Leu90Pro
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.414T>C
  hgvsp: ENST00000349777.1:c.414T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.573T>C
  hgvsp: ENST00000249647.3:c.573T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.989T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*474T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13721T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.414T>C
  hgvsp: ENST00000397138.1:c.414T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu90Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

15-42823617-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823617
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823617
    reference: chr 15
allele count: 1
allele frequency: 8.290911502810618e-6
allele num: 120614
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.418A>G
  hgvsp: ENSP00000207062.1:p.Thr140Ala
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.273A>G
  hgvsp: ENST00000564153.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13717A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1600A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*478A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.418A>G
  hgvsp: ENSP00000380327.1:p.Thr140Ala
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.577A>G
  hgvsp: ENSP00000249647.3:p.Thr193Ala
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.630A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.993A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1600A>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3607
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr193Ala
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

15-42823619-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823619
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823619
    reference: chr 15
allele count: 1
allele frequency: 8.285004142502071e-6
allele num: 120700
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.420C>G
  hgvsp: ENST00000349777.1:c.420C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.995C>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1602C>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.275C>G
  hgvsp: ENSP00000455339.1:p.Pro92Arg
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*480C>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.632C>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.579C>G
  hgvsp: ENST00000249647.3:c.579C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.420C>G
  hgvsp: ENST00000397138.1:c.420C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13715C>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1602C>G
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro92Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/15-42823621-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823621
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823621
    reference: chr 15
allele count: 1
allele frequency: 8.27841981522567e-6
allele num: 120796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1604A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13713A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.422A>C
  hgvsp: ENSP00000380327.1:p.Asn141Thr
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1604A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.422A>C
  hgvsp: ENSP00000207062.1:p.Asn141Thr
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*482A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.277A>C
  hgvsp: ENSP00000455339.1:p.Thr93Pro
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.581A>C
  hgvsp: ENSP00000249647.3:p.Asn194Thr
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.634A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.997A>C
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3605
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn194Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

15-42823626-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823626
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823626
    reference: chr 15
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.282G>C
  hgvsp: ENSP00000455339.1:p.Glu94Asp
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13708G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*487G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1609G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.586G>C
  hgvsp: ENSP00000249647.3:p.Asp196His
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1609G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.427G>C
  hgvsp: ENSP00000207062.1:p.Asp143His
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.1002G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.639G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.427G>C
  hgvsp: ENSP00000380327.1:p.Asp143His
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp196His
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

15-42823629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823629
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823629
    reference: chr 15
allele count: 2
allele frequency: 1.65338447802652e-5
allele num: 120964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.642C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13705C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.430C>T
  hgvsp: ENSP00000207062.1:p.Arg144Cys
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1612C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.1005C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*490C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.589C>T
  hgvsp: ENSP00000249647.3:p.Arg197Cys
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.430C>T
  hgvsp: ENSP00000380327.1:p.Arg144Cys
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1612C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.285C>T
  hgvsp: ENST00000564153.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg197Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

15-42823630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823630
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823630
    reference: chr 15
allele count: 5
allele frequency: 4.131889926452359e-5
allele num: 121010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.1006G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1613G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.643G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.431G>A
  hgvsp: ENSP00000380327.1:p.Arg144His
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.431G>A
  hgvsp: ENSP00000207062.1:p.Arg144His
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.286G>A
  hgvsp: ENSP00000455339.1:p.Val96Ile
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13704G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.590G>A
  hgvsp: ENSP00000249647.3:p.Arg197His
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1613G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*491G>A
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg197His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

15-42823637-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823637
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823637
    reference: chr 15
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.293T>C
  hgvsp: ENSP00000455339.1:p.Ile98Thr
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13697T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000568514
  gene symbol: SNAP23
  hgvsc: ENST00000568514.1:n.1013T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.597T>C
  hgvsp: ENST00000249647.3:c.597T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1620T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1620T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*498T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.438T>C
  hgvsp: ENST00000349777.1:c.438T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.438T>C
  hgvsp: ENST00000397138.1:c.438T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.650T>C
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42183
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile98Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS

15-42823645-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823645
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823645
    reference: chr 15
allele count: 3
allele frequency: 2.475165836111019e-5
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.301A>G
  hgvsp: ENSP00000455339.1:p.Met101Val
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.446A>G
  hgvsp: ENSP00000380327.1:p.Asn149Ser
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1628A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13689A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.605A>G
  hgvsp: ENSP00000249647.3:p.Asn202Ser
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.658A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1628A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*506A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.446A>G
  hgvsp: ENSP00000207062.1:p.Asn149Ser
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn202Ser
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-42823650-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823650
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823650
    reference: chr 15
allele count: 5
allele frequency: 4.12452774157359e-5
allele num: 121226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.663A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1633A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13684A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*511A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.610A>G
  hgvsp: ENSP00000249647.3:p.Arg204Gly
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.306A>G
  hgvsp: ENST00000564153.1:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1633A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.451A>G
  hgvsp: ENSP00000207062.1:p.Arg151Gly
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.451A>G
  hgvsp: ENSP00000380327.1:p.Arg151Gly
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8135
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg204Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

15-42823654-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823654
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823654
    reference: chr 15
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1637C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.310C>T
  hgvsp: ENSP00000455339.1:p.Gln104Ter
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1637C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.455C>T
  hgvsp: ENSP00000380327.1:p.Ala152Val
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*515C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.614C>T
  hgvsp: ENSP00000249647.3:p.Ala205Val
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.667C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13680C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.455C>T
  hgvsp: ENSP00000207062.1:p.Ala152Val
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln104Ter
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

15-42823659-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823659
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823659
    reference: chr 15
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.315A>G
  hgvsp: ENST00000564153.1:c.315A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1642A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.460A>G
  hgvsp: ENSP00000380327.1:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.672A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.460A>G
  hgvsp: ENSP00000207062.1:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.619A>G
  hgvsp: ENSP00000249647.3:p.Lys207Glu
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*520A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1642A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13675A>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys207Glu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-42823663-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823663
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823663
    reference: chr 15
allele count: 2
allele frequency: 1.649457328538911e-5
allele num: 121252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.676T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.464T>G
  hgvsp: ENSP00000207062.1:p.Leu155Arg
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.319T>G
  hgvsp: ENSP00000455339.1:p.Ser107Ala
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.623T>G
  hgvsp: ENSP00000249647.3:p.Leu208Arg
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1646T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.464T>G
  hgvsp: ENSP00000380327.1:p.Leu155Arg
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*524T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1646T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13671T>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26652
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42257
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu208Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/15-42823671-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823671
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823671
    reference: chr 15
allele count: 6
allele frequency: 4.948616861587186e-5
allele num: 121246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.327A>C
  hgvsp: ENST00000564153.1:c.327A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*532A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.472A>C
  hgvsp: ENSP00000207062.1:p.Ser158Arg
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.472A>C
  hgvsp: ENSP00000380327.1:p.Ser158Arg
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.631A>C
  hgvsp: ENSP00000249647.3:p.Ser211Arg
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.684A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13663A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1654A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1654A>C
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 26650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3592
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser211Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-42823674-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823674
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823674
    reference: chr 15
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*535T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.634T>G
  hgvsp: ENSP00000249647.3:p.Ter212GluextTer75
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.475T>G
  hgvsp: ENSP00000207062.1:p.Ter159GluextTer75
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1657T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.330T>G
  hgvsp: ENST00000564153.1:c.330T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13660T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1657T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.687T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000380327
  ensembl transcript: ENST00000397138
  gene symbol: SNAP23
  hgvsc: ENST00000397138.1:c.475T>G
  hgvsp: ENSP00000380327.1:p.Ter159GluextTer?
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ter212GluextTer75
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/15-42823681-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823681
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823680
    reference: chr 15
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*6delC
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.695delC
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1665delC
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1665delC
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*6delC
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*543delC
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.338delC
  hgvsp: ENSP00000455339.1:p.Thr113MetfsTer12
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13652delC
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr113MetfsTer12
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: AC
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-42823690-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823690
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823690
    reference: chr 15
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.346C>A
  hgvsp: ENSP00000455339.1:p.Leu116Ile
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1673C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*14C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1673C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.703C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*551C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*14C>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13644C>A
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu116Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

15-42823694-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823694
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823694
    reference: chr 15
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.350T>C
  hgvsp: ENSP00000455339.1:p.Leu117Pro
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1677T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13640T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1677T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*555T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.707T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*18T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*18T>C
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10027
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu117Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

15-42823695-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823695
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823695
    reference: chr 15
allele count: 1
allele frequency: 8.252867871585376e-6
allele num: 121170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*556T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*19T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*19T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.351T>G
  hgvsp: ENST00000564153.1:c.351T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1678T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1678T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.708T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13639T>G
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu117Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

15-42823696-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823696
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823696
    reference: chr 15
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*20T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.352T>C
  hgvsp: ENSP00000455339.1:p.Tyr118His
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1679T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*557T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.709T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1679T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*20T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13638T>C
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr118His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

15-42823708-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823708
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823708
    reference: chr 15
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1691A>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*32A>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*569A>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*32A>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.721A>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1691A>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.364A>T
  hgvsp: ENSP00000455339.1:p.Thr122Ser
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13626A>T
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr122Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

15-42823713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823713
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823713
    reference: chr 15
allele count: 5
allele frequency: 4.148344810420642e-5
allele num: 120530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.369C>T
  hgvsp: ENST00000564153.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*574C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.726C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13621C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*37C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1696C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1696C>T
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26529
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser123Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

15-42823714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823714
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823714
    reference: chr 15
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*575G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.727G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*38G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1697G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.370G>A
  hgvsp: ENSP00000455339.1:p.Val124Ile
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13620G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1697G>A
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15819
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8046
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val124Ile
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

15-42823720-CCTCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823720
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823715
    reference: chr 15
allele count: 1
allele frequency: 8.334861391255063e-6
allele num: 119978
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*45_*49delCTCCT
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*582_*586delCTCCT
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.734_738delCTCCT
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1704_422+1708delCTCCT
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1704_422+1708delCTCCT
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.377_381delCTCCT
  hgvsp: ENSP00000455339.1:p.Pro126LeufsTer59
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*45_*49delCTCCT
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro126LeufsTer59
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: CCTCCT
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

15-42823724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823724
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823724
    reference: chr 15
allele count: 3
allele frequency: 2.511637252603731e-5
allele num: 119444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.380C>T
  hgvsp: ENSP00000455339.1:p.Pro127Leu
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13610C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*585C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.737C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*48C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1707C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*48C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1707C>T
  variant of: http://identifiers.org/hgnc/11131
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26065
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7862
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro127Leu
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

15-42823734-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823734
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823734
    reference: chr 15
allele count: 1
allele frequency: 8.458948721852847e-6
allele num: 118218
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*58A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1717A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.*6A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1717A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000457535
  ensembl transcript: ENST00000563765
  gene symbol: SNAP23
  hgvsc: ENST00000563765.1:c.*595A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.747A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*58A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13600A>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7466
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-42823745-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823745
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823745
    reference: chr 15
allele count: 1
allele frequency: 8.621432882145012e-6
allele num: 115990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*69A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*69A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13589A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1728A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.*17A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1728A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.758A>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13616
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6741
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33974
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

15-42823748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823748
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823748
    reference: chr 15
allele count: 1
allele frequency: 8.679199430644517e-6
allele num: 115218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1731G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*72G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1731G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*72G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13586G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.761G>A
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32045
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

15-42823756-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823756
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823756
    reference: chr 15
allele count: 1
allele frequency: 8.824411852950001e-6
allele num: 113322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1739T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1739T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.769T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.*28T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*80T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13578T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*80T>C
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8702
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4418
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2936
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-42823759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823759
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823759
    reference: chr 15
allele count: 1
allele frequency: 8.945343948474819e-6
allele num: 111790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1742C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1742C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13575C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*83C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.772C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*83C>T
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14771
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5779
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

15-42823760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823760
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823760
    reference: chr 15
allele count: 29
allele frequency: 2.59577515216613e-4
allele num: 111720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.773G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*84G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*84G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1743G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.*32G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1743G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13574G>A
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10050
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14868
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3518
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5789
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8715
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

15-42823765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823765
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823765
    reference: chr 15
allele count: 27
allele frequency: 2.450357570697354e-4
allele num: 110188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*89C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1748C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13569C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.778C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*89C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1748C>T
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12027
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13765
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2853
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8458
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6508
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

15-42823767-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823767
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823767
    reference: chr 15
allele count: 3
allele frequency: 2.748259435690729e-5
allele num: 109160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.780C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*91C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1750C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*91C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13567C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1750C>T
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15149
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6703
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6528
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12288
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

15-42823768-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823768
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823768
    reference: chr 15
allele count: 3
allele frequency: 2.760194317679965e-5
allele num: 108688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*92G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1751G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13566G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*92G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.781G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1751G>A
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12386
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7696
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10053
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

15-42823776-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42823776
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42823776
    reference: chr 15
allele count: 1
allele frequency: 9.345445030092333e-6
allele num: 107004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000207062
  ensembl transcript: ENST00000349777
  gene symbol: SNAP23
  hgvsc: ENST00000349777.1:c.*100A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.422+1759A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455339
  ensembl transcript: ENST00000564153
  gene symbol: SNAP23
  hgvsc: ENST00000564153.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.422+1759A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-13558A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092531
  ensembl transcript: ENST00000563333
  gene symbol: SNAP23
  hgvsc: ENST00000563333.1:n.789A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000249647
  ensembl transcript: ENST00000249647
  gene symbol: SNAP23
  hgvsc: ENST00000249647.3:c.*100A>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14911
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6879
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5709
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3520
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3484
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-42836239-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836239
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836239
    reference: chr 15
allele count: 2
allele frequency: 1.649838315845047e-5
allele num: 121224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.*42G>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.*42G>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1168C>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.457G>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1095C>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.*42G>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1095C>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4685
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15990
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

15-42836246-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836246
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836246
    reference: chr 15
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.*35T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.*35T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1161A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.450T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.*35T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1088A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1454T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1088A>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7814
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/15-42836257-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836257
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836257
    reference: chr 15
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1443T>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1077A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.439T>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.*24T>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.*24T>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.*24T>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1150A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1077A>C
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7822
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

15-42836258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836258
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836258
    reference: chr 15
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1149G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.*23C>T
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1442C>T
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1076G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.438C>T
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1076G>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.*23C>T
  variant of: http://identifiers.org/hgnc/26719
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7822
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16517
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

15-42836261-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836261
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836261
    reference: chr 15
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1073T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1073T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.*20A>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.*20A>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1439A>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1146T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.*20A>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.435A>C
  variant of: http://identifiers.org/hgnc/26719
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4685
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-42836272-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836272
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836272
    reference: chr 15
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.*9A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.424A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.*9A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1062T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1428A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1135T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1062T>C
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7828
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

15-42836275-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836275
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836275
    reference: chr 15
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.*6T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.*6T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.*6T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1425T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.421T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1059A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1132A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1059A>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16642
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17313
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4681
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-42836280-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836280
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836280
    reference: chr 15
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.416A>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.*1A>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.*1A>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1127T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1054T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.*1A>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1054T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1420A>C
  variant of: http://identifiers.org/hgnc/26719
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

15-42836284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836284
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836284
    reference: chr 15
allele count: 2
allele frequency: 1.648559982854976e-5
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1050C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.717G>A
  hgvsp: ENST00000323443.2:c.717G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1123C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.717G>A
  hgvsp: ENST00000397130.3:c.717G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1050C>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.412G>A
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1416G>A
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.717G>A
  hgvsp: ENST00000563454.1:c.717G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26719
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16676
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala239Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

15-42836285-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836285
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836285
    reference: chr 15
allele count: 4
allele frequency: 3.297174321606383e-5
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1049G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1049G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.716C>G
  hgvsp: ENSP00000455445.1:p.Ala239Gly
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.716C>G
  hgvsp: ENSP00000380319.3:p.Ala239Gly
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.716C>G
  hgvsp: ENSP00000326817.2:p.Ala239Gly
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.411C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1415C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1122G>C
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17308
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4681
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala239Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

15-42836299-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836299
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836299
    reference: chr 15
allele count: 4
allele frequency: 3.297881111385935e-5
allele num: 121290
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.702C>G
  hgvsp: ENST00000323443.2:c.702C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.397C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.702C>G
  hgvsp: ENST00000397130.3:c.702C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1035G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1035G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1108G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1401C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.702C>G
  hgvsp: ENST00000563454.1:c.702C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26719
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr234Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

15-42836300-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836300
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836300
    reference: chr 15
allele count: 2
allele frequency: 1.649022129876983e-5
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.396C>A
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.701C>A
  hgvsp: ENSP00000455445.1:p.Thr234Asn
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.701C>A
  hgvsp: ENSP00000380319.3:p.Thr234Asn
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.701C>A
  hgvsp: ENSP00000326817.2:p.Thr234Asn
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1034G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1034G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1400C>A
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1107G>T
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3694
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr234Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

15-42836313-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836313
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836313
    reference: chr 15
allele count: 2
allele frequency: 1.650110557407346e-5
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1021T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1387A>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.383A>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.688A>C
  hgvsp: ENST00000563454.1:c.688A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1094T>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.688A>C
  hgvsp: ENST00000323443.2:c.688A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.688A>C
  hgvsp: ENST00000397130.3:c.688A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1021T>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4672
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5213
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg230Arg
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

15-42836314-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836314
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836314
    reference: chr 15
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.687G>C
  hgvsp: ENSP00000326817.2:p.Glu229Asp
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1386G>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.687G>C
  hgvsp: ENSP00000455445.1:p.Glu229Asp
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1020C>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.382G>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.687G>C
  hgvsp: ENSP00000380319.3:p.Glu229Asp
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1093C>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1020C>G
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4672
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu229Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-42836324-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836324
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836324
    reference: chr 15
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1378-2A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.374-2A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1010T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.679-2A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1010T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.679-2A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.679-2A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1083T>C
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3694
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17296
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: c.679-2A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/15-42836329-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836329
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836329
    reference: chr 15
allele count: 1
allele frequency: 8.260093834665961e-6
allele num: 121064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1378-7T>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.679-7T>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.374-7T>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.679-7T>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.679-7T>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1005A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1078A>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1005A>C
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.679-7T>G
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

15-42836329-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836329
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836329
    reference: chr 15
allele count: 1
allele frequency: 8.260093834665961e-6
allele num: 121064
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1078A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1005A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.679-7T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1005A>G
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.679-7T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.374-7T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.679-7T>C
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1378-7T>C
  variant of: http://identifiers.org/hgnc/26719
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.679-7T>C
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

15-42836333-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836333
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836333
    reference: chr 15
allele count: 1
allele frequency: 8.261185645363822e-6
allele num: 121048
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.679-11A>T
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1378-11A>T
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-1001T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-1001T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.679-11A>T
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.374-11A>T
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1074T>A
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.679-11A>T
  variant of: http://identifiers.org/hgnc/26719
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17294
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

15-42836338-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836338
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836338
    reference: chr 15
allele count: 31
allele frequency: 2.561898780205613e-4
allele num: 121004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-996G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.679-16C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-996G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.679-16C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.374-16C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.679-16C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1069G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1378-16C>G
  variant of: http://identifiers.org/hgnc/26719
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-42836338-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836338
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836338
    reference: chr 15
allele count: 1
allele frequency: 8.264189613566494e-6
allele num: 121004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1069G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.679-16C>A
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.679-16C>A
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1378-16C>A
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.374-16C>A
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-996G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-996G>T
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.679-16C>A
  variant of: http://identifiers.org/hgnc/26719
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17291
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

15-42836345-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836345
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836344
    reference: chr 15
allele count: 2
allele frequency: 1.653958750268768e-5
allele num: 120922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-987delA
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.679-24delT
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-987delA
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1378-24delT
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.679-24delT
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1060delA
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.679-24delT
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.374-24delT
  variant of: http://identifiers.org/hgnc/26719
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7715
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: TA
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

15-42836348-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836348
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836348
    reference: chr 15
allele count: 16
allele frequency: 1.323758149386107e-4
allele num: 120868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-986G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1378-26C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.679-26C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.374-26C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1059G>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.679-26C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.679-26C>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-986G>C
  variant of: http://identifiers.org/hgnc/11131
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10148
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7650
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15662
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

15-42836362-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836362
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42836362
    reference: chr 15
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000569830
  gene symbol: LRRC57
  hgvsc: ENST00000569830.1:n.1378-40A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000455102
  ensembl transcript: ENST00000568841
  gene symbol: SNAP23
  hgvsc: ENST00000568841.1:c.423-972T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl transcript: ENST00000562868
  gene symbol: LRRC57
  hgvsc: ENST00000562868.1:n.374-40A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000455445
  ensembl transcript: ENST00000563454
  gene symbol: LRRC57
  hgvsc: ENST00000563454.1:c.679-40A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000326817
  ensembl transcript: ENST00000323443
  gene symbol: LRRC57
  hgvsc: ENST00000323443.2:c.679-40A>G
  variant of: http://identifiers.org/hgnc/26719
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456144
  ensembl transcript: ENST00000563873
  gene symbol: SNAP23
  hgvsc: ENST00000563873.1:c.157-972T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092531
  ensembl protein: ENSP00000456000
  ensembl transcript: ENST00000563830
  gene symbol: SNAP23
  hgvsc: ENST00000563830.1:c.423-1045T>C
  variant of: http://identifiers.org/hgnc/11131
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180979
  ensembl protein: ENSP00000380319
  ensembl transcript: ENST00000397130
  gene symbol: LRRC57
  hgvsc: ENST00000397130.3:c.679-40A>G
  variant of: http://identifiers.org/hgnc/26719
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13602
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

GenotypeQuality
all individuals: 4788
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7806
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2308
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3911
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509844184080203e-5
allele num: 66232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16026
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.309e1

FS
type: SiteQuality
SIO_000300: 5.991e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.1e-1

DP
type: SiteQuality
SIO_000300: 1.650376e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.617e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2284
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8154
bin: 9.75e1
variant carriers: 408

GenotypeQuality
all individuals: 1575
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23732
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3868
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 360
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 1.473647711511789e-3
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.554924299658518e-5
allele num: 66182
num of homozygotes: 0

African
type: Population
allele count: 391
allele frequency: 3.853735462251134e-2
allele num: 10146
num of homozygotes: 6

Other
type: Population
allele count: 2
allele frequency: 2.232142857142857e-3
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.26055716626749e-4
allele num: 15866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.694e0

DP
type: SiteQuality
SIO_000300: 1.649893e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.226e1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 3.182e0

GenotypeQuality
all individuals: 1190
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3899
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8010
bin: 9.75e1
variant carriers: 50

GenotypeQuality
all individuals: 457
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 48
allele frequency: 4.767580452920143e-3
allele num: 10068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73550850399167e-4
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.276e1

VQSLOD
type: SiteQuality
SIO_000300: 5.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.275e0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.640665e6

GenotypeQuality
all individuals: 3614
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 631
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37310
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7836
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.940617116242965e-4
allele num: 10306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13684
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.049e1

VQSLOD
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 2.414e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.755634e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.405e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
all individuals: 687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1951
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3613
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2148
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523229246001523e-5
allele num: 65650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.759272e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.282e1

MQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.032e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 3611
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7865
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13844
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.285e0

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.575e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.98e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.764236e6

GenotypeQuality
all individuals: 1572
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3613
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.400756408460569e-4
allele num: 14278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

QD
type: SiteQuality
SIO_000300: 1.407e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 1.776686e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7944
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515794579518584e-5
allele num: 65972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

QD
type: SiteQuality
SIO_000300: 1.696e1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

DP
type: SiteQuality
SIO_000300: 1.784102e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.49e-1

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40118
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66040
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

DP
type: SiteQuality
SIO_000300: 1.787656e6

FS
type: SiteQuality
SIO_000300: 9.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.617e0

QD
type: SiteQuality
SIO_000300: 1.388e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 1195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7966
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.348617666891436e-4
allele num: 14830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66060
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.366e0

QD
type: SiteQuality
SIO_000300: 1.619e1

DP
type: SiteQuality
SIO_000300: 1.789206e6

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 1201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7980
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40550
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66150
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.868e1

FS
type: SiteQuality
SIO_000300: 1.832e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

DP
type: SiteQuality
SIO_000300: 1.793848e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.153e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.129e0

MQRankSum
type: SiteQuality
SIO_000300: -1.465e0

VQSLOD
type: SiteQuality
SIO_000300: -2.555e0

QD
type: SiteQuality
SIO_000300: 9.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 2174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 41429
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variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.518888955835392e-5
allele num: 66388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.333924499619965e-5
allele num: 15788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.806428e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.792e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 689
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 526
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GenotypeQuality
all individuals: 3608
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1982
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variant carriers: 0

GenotypeQuality
all individuals: 97
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GenotypeQuality
all individuals: 8068
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variant carriers: 0

GenotypeQuality
all individuals: 2173
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variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.938e0

DP
type: SiteQuality
SIO_000300: 1.807895e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.228e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.44e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 9.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.24e-1

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1986
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 410
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variant carriers: 0

GenotypeQuality
all individuals: 8076
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variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 41655
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2176
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variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.003e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 7.221e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.561e0

DP
type: SiteQuality
SIO_000300: 1.810331e6

QD
type: SiteQuality
SIO_000300: 8.59e0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
all individuals: 1978
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3606
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variant carriers: 1

GenotypeQuality
all individuals: 8073
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GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16052
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

DP
type: SiteQuality
SIO_000300: 1.812092e6

MQRankSum
type: SiteQuality
SIO_000300: 5.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

FS
type: SiteQuality
SIO_000300: 7.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.66e0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.204243702692642e-5
allele num: 16118
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

VQSLOD
type: SiteQuality
SIO_000300: -6.082e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.058e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 1.117e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.812731e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 8095
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502313562886846e-5
allele num: 66564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.814329e6

QD
type: SiteQuality
SIO_000300: 1.299e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.271e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
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Other
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South Asian
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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QD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 6.00672753483902e-5
allele num: 66592
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Latino
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MQRankSum
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SIO_000300: 6.56e-1

FS
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VQSLOD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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European (Non-Finnish)
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allele num: 66624
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African
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Latino
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Other
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MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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num of homozygotes: 0

Latino
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South Asian
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African
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66654
num of homozygotes: 0

European (Finnish)
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FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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Other
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QD
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ClippingRankSum
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Finnish)
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East Asian
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African
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Latino
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European (Non-Finnish)
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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FS
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MQ
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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Other
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East Asian
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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MQ
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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Other
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South Asian
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ClippingRankSum
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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allele frequency: 6.933210076265311e-4
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European (Non-Finnish)
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Latino
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Other
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South Asian
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European (Finnish)
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FS
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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MQ
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DP
type: SiteQuality
SIO_000300: 1.81887e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: 6.1e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

MQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.673e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.918e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.817492e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.816977e6

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 7.196e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.922e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 9.615384615384615e-5
allele num: 10400
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.816915e6

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.49e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 10400
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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allele num: 16190
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Other
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66398
num of homozygotes: 0

European (Finnish)
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African
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South Asian
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Latino
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allele frequency: 1.731601731601732e-4
allele num: 11550
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Other
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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Other
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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VQSLOD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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ClippingRankSum
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DP
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QD
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VQSLOD
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MQ
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InbreedingCoeff
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SIO_000300: 3.2e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.283202874374438e-4
allele num: 15586
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East Asian
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African
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allele frequency: 9.674922600619196e-5
allele num: 10336
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Other
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65402
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Other
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East Asian
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Latino
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African
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11272
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 1.525785779676533e-4
allele num: 6554
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South Asian
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -1.9e-1

FS
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QD
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ClippingRankSum
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SIO_000300: 1.04e0

MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 9.906875371507826e-5
allele num: 10094
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 1.001001001001001e-4
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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DP
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FS
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MQ
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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allele num: 6500
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Latino
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InbreedingCoeff
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MQ
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DP
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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allele frequency: 3.765799986901565e-4
allele num: 61076
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ReadPosRankSum
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DP
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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allele num: 60468
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South Asian
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African
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allele count: 1
allele frequency: 1.031140441328109e-4
allele num: 9698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.66e-2

DP
type: SiteQuality
SIO_000300: 1.29589e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

QD
type: SiteQuality
SIO_000300: 8.99e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6721
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.867413632119514e-4
allele num: 10710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.661295145695584e-5
allele num: 60194
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.287021e6

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.752e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

GenotypeQuality
all individuals: 1120
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 974
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variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.840677434530344e-5
allele num: 12754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.237e0

MQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

QD
type: SiteQuality
SIO_000300: 1.741e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: -1.167e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

DP
type: SiteQuality
SIO_000300: 1.254502e6

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 1995
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variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218323586744639e-4
allele num: 16416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 8.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 2.566875e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16266
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 3695
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5234
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.977e0

DP
type: SiteQuality
SIO_000300: 2.568871e6

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.317e1

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 5227
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 3162
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GenotypeQuality
all individuals: 16493
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 4683
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-1

DP
type: SiteQuality
SIO_000300: 2.570506e6

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.302e1

FS
type: SiteQuality
SIO_000300: 4.293e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.546e0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4683
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 1994
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GenotypeQuality
all individuals: 5224
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3160
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

QD
type: SiteQuality
SIO_000300: 1.253e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

FS
type: SiteQuality
SIO_000300: 4.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.36e0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

DP
type: SiteQuality
SIO_000300: 2.570436e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.55e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.570526e6

MQ
type: SiteQuality
SIO_000300: 5.988e1

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.04e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.264e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.781e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 3.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.579e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.571308e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.99e-2

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -6.562e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.273e0

DP
type: SiteQuality
SIO_000300: 2.571322e6

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.16e-2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

DP
type: SiteQuality
SIO_000300: 2.571457e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.342e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
SIO_000300: -1.065e0

FS
type: SiteQuality
SIO_000300: 2.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 5218
bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.571624e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
SIO_000300: 8.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 6.615e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

QD
type: SiteQuality
SIO_000300: 1.389e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.996821684507211e-5
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

DP
type: SiteQuality
SIO_000300: 2.571488e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 3157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 17306
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.42600679281902e-4
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.195e0

QD
type: SiteQuality
SIO_000300: 1.227e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.126e0

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-2

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.832e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

DP
type: SiteQuality
SIO_000300: 2.570825e6

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.570615e6

FS
type: SiteQuality
SIO_000300: 4.238e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.03e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16577
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000120004800192e-5
allele num: 66664
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.124e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

MQRankSum
type: SiteQuality
SIO_000300: 8.77e-1

QD
type: SiteQuality
SIO_000300: 1.659e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

FS
type: SiteQuality
SIO_000300: 1.267e0

DP
type: SiteQuality
SIO_000300: 2.569031e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.654373431164318e-5
allele num: 10358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.11e1

FS
type: SiteQuality
SIO_000300: 1.156e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e0

VQSLOD
type: SiteQuality
SIO_000300: -2.292e0

DP
type: SiteQuality
SIO_000300: 2.568457e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.938e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4668
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.566934e6

QD
type: SiteQuality
SIO_000300: 1.469e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.325e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
all individuals: 1989
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7793
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GenotypeQuality
all individuals: 3146
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.51e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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FS
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QD
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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QD
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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Latino
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Other
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East Asian
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European (Non-Finnish)
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allele frequency: 4.055150040551501e-4
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VQSLOD
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DP
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Other
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Latino
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East Asian
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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DP
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FS
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MQ
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MQRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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African
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Latino
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MQ
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QD
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DP
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Finnish)
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Other
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European (Non-Finnish)
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South Asian
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FS
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Other
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African
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East Asian
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Latino
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European (Finnish)
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MQRankSum
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VQSLOD
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ClippingRankSum
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